Wall clock time and date at job start Tue Mar 31 2020 01:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00374 * 2 1 4 4 H 1.07996 * 120.00456 * 203.88649 * 3 2 1 5 5 C 1.38817 * 120.00059 * 23.88741 * 3 2 1 6 6 N 1.31622 * 119.99742 * 10.81160 * 5 3 2 7 7 Si 1.86799 * 120.00252 * 190.80881 * 5 3 2 8 8 H 1.48501 * 109.46851 * 60.00084 * 7 5 3 9 9 H 1.48496 * 109.46947 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47285 * 300.00211 * 7 5 3 11 11 C 1.46499 * 119.99612 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.77643 * 176.76318 * 11 2 1 13 13 C 1.55154 * 110.72383 * 53.52167 * 11 2 1 14 14 C 1.55127 * 101.48493 * 205.97004 * 13 11 2 15 15 N 1.47425 * 104.72565 * 37.29518 * 14 13 11 16 16 C 1.34775 * 125.65105 * 155.81876 * 15 14 13 17 17 O 1.21280 * 120.00310 * 179.68970 * 16 15 14 18 18 C 1.50703 * 119.99868 * 359.69184 * 16 15 14 19 19 C 1.52994 * 110.46050 * 61.14907 * 18 16 15 20 20 C 1.54504 * 110.62622 * 183.83656 * 18 16 15 21 21 C 1.54488 * 104.06236 * 118.70340 * 20 18 16 22 22 O 1.44421 * 104.80253 * 23.97244 * 21 20 18 23 23 C 1.44426 * 105.28017 * 319.49113 * 22 21 20 24 24 C 1.47028 * 108.70102 * 335.55153 * 15 14 13 25 25 H 1.09000 * 109.47103 * 275.03923 * 1 2 3 26 26 H 1.09006 * 109.46987 * 35.03328 * 1 2 3 27 27 H 1.08997 * 109.47436 * 155.03573 * 1 2 3 28 28 H 0.96997 * 119.99671 * 179.97438 * 6 5 3 29 29 H 1.08997 * 111.00007 * 324.20798 * 13 11 2 30 30 H 1.08999 * 111.00069 * 88.02159 * 13 11 2 31 31 H 1.08999 * 110.49413 * 278.45154 * 14 13 11 32 32 H 1.09001 * 110.34022 * 156.06011 * 14 13 11 33 33 H 1.09002 * 109.47531 * 298.85568 * 19 18 16 34 34 H 1.09001 * 109.47304 * 58.84775 * 19 18 16 35 35 H 1.08992 * 109.47576 * 178.85001 * 19 18 16 36 36 H 1.08999 * 110.51058 * 237.34053 * 20 18 16 37 37 H 1.08999 * 110.51461 * 359.91804 * 20 18 16 38 38 H 1.09003 * 110.36773 * 265.14704 * 21 20 18 39 39 H 1.08994 * 110.37723 * 142.80999 * 21 20 18 40 40 H 1.08996 * 110.37334 * 159.33841 * 23 22 21 41 41 H 1.08997 * 110.37391 * 281.68003 * 23 22 21 42 42 H 1.08998 * 109.87864 * 120.70483 * 24 15 14 43 43 H 1.08998 * 109.88001 * 241.71727 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1603 1.2259 -0.3787 5 6 1.5449 2.3366 0.4868 6 7 0.4050 2.2551 1.1398 7 14 2.3488 4.0008 0.2153 8 1 2.4817 4.2543 -1.2419 9 1 1.5098 5.0616 0.8283 10 1 3.6941 4.0091 0.8439 11 6 2.1974 -1.2688 -0.0006 12 1 3.2719 -1.0949 -0.0580 13 6 1.7247 -2.1751 -1.1678 14 6 2.0551 -3.5867 -0.6161 15 7 1.7499 -3.5071 0.8240 16 6 1.4404 -4.5496 1.6202 17 8 1.2121 -4.3669 2.7972 18 6 1.3781 -5.9423 1.0479 19 6 2.7402 -6.3497 0.4827 20 6 0.9137 -6.9517 2.1216 21 6 -0.3999 -7.5299 1.5499 22 8 -0.2965 -7.3391 0.1221 23 6 0.2902 -6.0300 -0.0454 24 6 1.8454 -2.1029 1.2492 25 1 -0.3633 0.0903 1.0237 26 1 -0.3633 0.8415 -0.5900 27 1 -0.3634 -0.9316 -0.4337 28 1 -0.0174 3.0591 1.4803 29 1 0.6549 -2.0607 -1.3426 30 1 2.2911 -1.9694 -2.0761 31 1 3.1091 -3.8189 -0.7682 32 1 1.4273 -4.3376 -1.0960 33 1 3.0195 -5.6671 -0.3199 34 1 3.4893 -6.3066 1.2733 35 1 2.6824 -7.3655 0.0920 36 1 1.6544 -7.7409 2.2497 37 1 0.7298 -6.4444 3.0687 38 1 -1.2576 -6.9851 1.9444 39 1 -0.4820 -8.5908 1.7860 40 1 0.7383 -5.9388 -1.0347 41 1 -0.4617 -5.2552 0.1044 42 1 0.8900 -1.7736 1.6577 43 1 2.6268 -1.9957 2.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972626570.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:42 Heat of formation + Delta-G solvation = -46.549569 kcal Electronic energy + Delta-G solvation = -23576.999827 eV Core-core repulsion = 20237.314076 eV Total energy + Delta-G solvation = -3339.685750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81624 -38.78728 -37.33557 -34.90987 -33.68147 -31.63594 -30.05786 -29.71201 -27.81385 -26.76707 -26.07088 -24.29923 -23.01316 -22.37140 -21.33980 -19.25727 -18.84922 -17.16896 -17.08966 -16.37175 -15.87384 -15.66026 -15.25040 -14.84937 -14.39662 -14.22711 -13.75783 -13.48813 -13.26381 -12.94939 -12.70768 -12.58919 -12.30568 -12.14865 -12.10992 -11.80836 -11.59463 -11.36363 -11.08585 -10.95315 -10.90332 -10.80877 -10.59188 -10.47343 -10.32661 -9.94638 -9.90973 -9.85887 -9.53989 -8.60739 -8.35087 -6.83958 -5.78668 -3.28252 2.73504 3.10911 3.35685 3.41141 3.41831 3.79192 4.18807 4.42953 4.50372 4.59160 4.77792 4.91431 5.02074 5.03301 5.18818 5.25600 5.34349 5.42297 5.44799 5.51531 5.53581 5.58707 5.63813 5.76916 5.77712 5.84008 5.92758 5.95380 5.98346 6.29508 6.32114 6.47682 6.56180 6.64099 6.79720 6.83092 7.31182 7.69227 7.74874 7.76051 8.30061 8.34251 9.15827 9.77584 10.26805 11.25397 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035850 B = 0.003914 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.852315 B = 7151.278861 C = 7240.058370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.264 4.264 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.094 3.906 15 N -0.608 5.608 16 C 0.535 3.465 17 O -0.541 6.541 18 C -0.112 4.112 19 C -0.139 4.139 20 C -0.143 4.143 21 C 0.045 3.955 22 O -0.372 6.372 23 C 0.058 3.942 24 C 0.086 3.914 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.002 0.998 28 H 0.255 0.745 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 -17.777 -3.877 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.305 5.305 3 C -0.394 4.394 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.548 5.548 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.030 4.030 15 N -0.341 5.341 16 C 0.322 3.678 17 O -0.419 6.419 18 C -0.115 4.115 19 C -0.196 4.196 20 C -0.181 4.181 21 C -0.032 4.032 22 O -0.291 6.291 23 C -0.019 4.019 24 C -0.038 4.038 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.020 0.980 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.728 -17.678 -3.286 18.064 hybrid contribution 0.444 1.145 0.186 1.242 sum 2.173 -16.533 -3.101 16.961 Atomic orbital electron populations 1.20817 0.82420 0.95571 0.99619 1.43893 1.01885 0.99864 1.84895 1.19178 0.99081 0.85460 1.35655 0.91244 1.25098 0.97663 0.98759 0.97713 1.70054 1.18460 1.27692 1.38624 0.86292 0.78591 0.83511 0.77847 1.20963 1.21585 1.20846 1.21356 0.96401 0.85978 0.89997 0.90356 1.23407 1.02908 0.93128 0.99992 1.22621 1.00142 0.99291 0.80903 1.48500 1.67701 1.07908 1.09985 1.19845 0.76794 0.85225 0.85890 1.90671 1.50130 1.84953 1.16124 1.22091 0.98679 0.93425 0.97318 1.21921 0.93878 1.02341 1.01475 1.23028 0.97576 0.97726 0.99745 1.23457 0.97097 1.01556 0.81094 1.89113 1.83070 1.33885 1.22989 1.23564 0.93656 0.86136 0.98504 1.22977 1.02363 0.78445 1.00052 0.95001 0.93769 0.97998 0.93518 0.90271 0.90313 0.91316 0.91050 0.91226 0.91852 0.91086 0.90129 0.88098 0.92026 0.88874 0.88048 0.91677 0.90886 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 7.80 59.85 0.47 4.29 16 2 N -0.59 -14.00 2.93 -171.39 -0.50 -14.51 16 3 C -0.26 -7.00 9.61 -15.06 -0.14 -7.14 16 4 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 5 C 0.01 0.19 5.14 -17.43 -0.09 0.10 16 6 N -0.90 -25.95 10.64 55.49 0.59 -25.36 16 7 Si 0.91 21.36 29.57 -169.99 -5.03 16.34 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.17 3.32 3.44 -66.10 -0.23 3.09 16 12 H 0.08 1.48 7.94 -51.93 -0.41 1.06 16 13 C -0.15 -2.31 6.60 -24.47 -0.16 -2.48 16 14 C 0.09 1.16 5.11 -2.41 -0.01 1.15 16 15 N -0.61 -9.59 3.32 -170.38 -0.57 -10.16 16 16 C 0.54 8.59 6.50 -10.98 -0.07 8.52 16 17 O -0.54 -10.76 15.63 5.56 0.09 -10.68 16 18 C -0.11 -1.34 0.69 -154.09 -0.11 -1.44 16 19 C -0.14 -1.34 8.09 37.15 0.30 -1.04 16 20 C -0.14 -1.60 6.32 -25.16 -0.16 -1.76 16 21 C 0.04 0.46 7.63 37.94 0.29 0.75 16 22 O -0.37 -4.49 11.65 -35.23 -0.41 -4.90 16 23 C 0.06 0.67 5.34 37.94 0.20 0.87 16 24 C 0.09 1.65 6.51 -3.06 -0.02 1.63 16 25 H 0.03 0.84 7.27 -51.93 -0.38 0.47 16 26 H 0.04 1.14 7.34 -51.93 -0.38 0.75 16 27 H 0.00 0.03 6.03 -51.93 -0.31 -0.28 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.08 1.27 6.05 -51.93 -0.31 0.96 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.73 7.17 -51.93 -0.37 0.36 16 32 H 0.07 0.73 4.82 -51.93 -0.25 0.48 16 33 H 0.07 0.62 5.27 -51.93 -0.27 0.34 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 37 H 0.10 1.33 6.52 -51.93 -0.34 0.99 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.96 6.31 -51.93 -0.33 0.63 16 41 H 0.06 0.82 7.86 -51.93 -0.41 0.41 16 42 H 0.07 1.63 7.13 -51.93 -0.37 1.26 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 326.27 15.07 4.92 4.92 Total: -1.00 -31.10 326.27 -7.27 -38.36 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.62 Total: -0.54 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 0.27 Total: 6.53 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.48 Total: -50.03 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.32 Total: -15.58 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.10 -7.27 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972626570.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.185 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds