Wall clock time and date at job start Tue Mar 31 2020 01:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53011 * 110.91306 * 2 1 4 4 C 1.54905 * 111.00780 * 236.09858 * 2 1 3 5 5 N 1.47431 * 104.83206 * 204.91558 * 4 2 1 6 6 C 1.36933 * 125.64467 * 204.16446 * 5 4 2 7 7 H 1.07997 * 120.00663 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99607 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00121 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99911 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47131 * 59.99799 * 10 8 6 12 12 H 1.48501 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47319 * 299.99411 * 10 8 6 14 14 C 1.47020 * 108.69971 * 24.12786 * 5 4 2 15 15 C 1.54324 * 107.27629 * 358.93958 * 14 5 4 16 16 H 1.09003 * 110.71892 * 219.26969 * 15 14 5 17 17 N 1.46497 * 110.72034 * 96.16885 * 15 14 5 18 18 C 1.34777 * 119.99525 * 86.45336 * 17 15 14 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 15 21 21 H 1.09004 * 109.87193 * 304.57172 * 20 18 17 22 22 C 1.54094 * 109.88163 * 65.58358 * 20 18 17 23 23 C 1.54815 * 104.18847 * 121.45356 * 22 20 18 24 24 C 1.54990 * 102.09151 * 20.88210 * 23 22 20 25 25 O 1.43743 * 109.87789 * 183.56955 * 20 18 17 26 26 H 1.08994 * 109.47533 * 296.10196 * 1 2 3 27 27 H 1.09003 * 109.47407 * 56.10155 * 1 2 3 28 28 H 1.09002 * 109.47322 * 176.10015 * 1 2 3 29 29 H 1.08996 * 109.46957 * 183.90123 * 3 2 1 30 30 H 1.09002 * 109.46885 * 303.89945 * 3 2 1 31 31 H 1.08998 * 109.47267 * 63.90262 * 3 2 1 32 32 H 1.08999 * 110.36513 * 86.07785 * 4 2 1 33 33 H 1.08999 * 110.45872 * 323.80023 * 4 2 1 34 34 H 0.96999 * 120.00087 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.87889 * 239.51844 * 14 5 4 36 36 H 1.08996 * 109.88094 * 118.36421 * 14 5 4 37 37 H 0.97000 * 120.00580 * 266.46082 * 17 15 14 38 38 H 1.08997 * 110.49157 * 240.13257 * 22 20 18 39 39 H 1.09001 * 110.49028 * 2.64537 * 22 20 18 40 40 H 1.09005 * 110.90426 * 139.08309 * 23 22 20 41 41 H 1.09004 * 110.90577 * 262.64704 * 23 22 20 42 42 H 1.09000 * 110.62010 * 81.47835 * 24 23 22 43 43 H 1.09002 * 110.61957 * 204.47677 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0761 1.4293 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2430 -0.7732 6 6 4.4645 -1.5652 -1.6070 7 1 4.3340 -1.5098 -2.6777 8 6 5.6838 -1.9630 -1.0761 9 7 5.8431 -2.0300 0.2287 10 14 7.0987 -2.4033 -2.2135 11 1 7.4402 -1.2291 -3.0561 12 1 8.2817 -2.7922 -1.4044 13 1 6.6993 -3.5380 -3.0841 14 6 3.4674 -1.2740 0.6961 15 6 2.0860 -0.8078 1.2023 16 1 2.1919 -0.1723 2.0816 17 7 1.2267 -1.9573 1.4962 18 6 1.2806 -2.5467 2.7071 19 8 2.0402 -2.1252 3.5535 20 6 0.3923 -3.7253 3.0116 21 1 -0.6497 -3.4599 2.8326 22 6 0.7877 -4.9224 2.1255 23 6 1.1475 -6.0394 3.1352 24 6 0.4178 -5.5652 4.4177 25 8 0.5659 -4.1275 4.3806 26 1 -0.3634 0.4521 0.9228 27 1 -0.3634 0.5732 -0.8530 28 1 -0.3634 -1.0253 -0.0699 29 1 3.1635 1.4027 -0.0699 30 1 1.6704 1.9733 -0.8530 31 1 1.7835 1.9301 0.9229 32 1 2.1560 -0.1719 -2.0836 33 1 1.4525 -1.6703 -1.4042 34 1 6.6953 -2.3076 0.5997 35 1 4.2426 -0.5996 1.0601 36 1 3.6650 -2.2892 1.0402 37 1 0.6190 -2.2943 0.8194 38 1 -0.0515 -5.2285 1.5009 39 1 1.6501 -4.6714 1.5078 40 1 0.7624 -7.0033 2.8023 41 1 2.2247 -6.0872 3.2949 42 1 -0.6361 -5.8414 4.3841 43 1 0.8957 -5.9779 5.3061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972790004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:32 Heat of formation + Delta-G solvation = -56.420382 kcal Electronic energy + Delta-G solvation = -23783.204112 eV Core-core repulsion = 20443.090331 eV Total energy + Delta-G solvation = -3340.113781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20396 -38.92558 -37.35332 -33.87331 -33.08670 -32.00521 -30.69569 -29.85279 -27.85931 -26.71851 -25.61668 -23.97713 -22.90260 -21.73661 -20.51519 -19.71875 -18.75396 -17.25135 -16.67466 -16.49765 -15.99918 -15.12128 -14.82624 -14.60897 -14.02255 -13.88525 -13.78556 -13.65799 -13.27700 -13.24480 -12.52214 -12.09007 -11.97244 -11.80623 -11.66223 -11.62207 -11.35849 -11.31692 -11.06446 -10.97864 -10.91638 -10.75490 -10.37907 -10.24177 -10.03919 -9.97410 -9.86838 -9.62655 -9.13545 -8.60684 -8.40159 -6.80895 -5.66794 -3.02047 3.02064 3.24863 3.41255 3.45546 3.47695 4.10421 4.48817 4.51518 4.78280 4.80613 4.93912 5.04571 5.10265 5.27479 5.31174 5.37208 5.53058 5.55035 5.60137 5.65437 5.69951 5.81847 5.92298 5.92969 6.03986 6.04375 6.17592 6.20894 6.25628 6.40379 6.59636 6.62202 6.68626 6.73201 6.78926 6.98563 7.57668 7.68109 7.84857 7.98299 8.28050 8.68723 9.24003 9.84781 10.50445 11.43454 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.006040 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.787751 B = 4634.267187 C = 5870.811040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.076 0.924 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.176 3.824 15 C 0.126 3.874 16 H 0.086 0.914 17 N -0.709 5.709 18 C 0.510 3.490 19 O -0.520 6.520 20 C 0.062 3.938 21 H 0.089 0.911 22 C -0.149 4.149 23 C -0.153 4.153 24 C 0.044 3.956 25 O -0.348 6.348 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.015 0.985 34 H 0.253 0.747 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.394 0.606 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.864 -3.368 2.563 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.051 3.949 15 C 0.021 3.979 16 H 0.104 0.896 17 N -0.362 5.362 18 C 0.295 3.705 19 O -0.395 6.395 20 C 0.000 4.000 21 H 0.107 0.893 22 C -0.187 4.187 23 C -0.191 4.191 24 C -0.032 4.032 25 O -0.266 6.266 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.229 0.771 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.011 -2.991 3.409 14.726 hybrid contribution 0.481 -0.664 -1.137 1.402 sum -13.529 -3.655 2.271 14.197 Atomic orbital electron populations 1.21677 0.94773 1.01015 1.01399 1.22007 0.94410 0.96072 0.96580 1.21598 1.02531 0.93700 1.00511 1.21621 0.87823 0.94484 0.94286 1.44429 1.07591 1.79005 1.01831 1.18964 0.89424 1.38701 0.88845 0.90575 1.24813 0.97804 1.01780 0.95923 1.69960 1.24273 1.53096 1.09129 0.86236 0.82036 0.78209 0.79457 1.21193 1.21650 1.21298 1.21512 0.89713 1.00465 0.83253 1.22464 0.92378 0.86128 0.96925 0.89580 1.45934 1.43045 1.33210 1.14034 1.20277 0.83755 0.84006 0.82510 1.90721 1.38732 1.63422 1.46605 1.22615 0.98699 0.94474 0.84194 0.89342 1.22954 1.03410 0.93824 0.98507 1.23125 1.02350 0.98604 0.94993 1.23648 0.99444 0.81221 0.98932 1.89047 1.93167 1.21138 1.23239 0.92805 0.92629 0.93105 0.91189 0.92891 0.93328 0.94162 0.96763 0.93633 0.92899 0.93421 0.77129 0.89824 0.89155 0.89956 0.89985 0.92100 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.22 37.15 0.31 -1.35 16 2 C -0.09 -1.47 0.83 -152.36 -0.13 -1.60 16 3 C -0.13 -2.01 8.57 37.16 0.32 -1.69 16 4 C 0.14 2.81 6.14 -2.53 -0.02 2.80 16 5 N -0.60 -14.92 3.38 -170.07 -0.57 -15.50 16 6 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 7 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -27.48 10.31 55.49 0.57 -26.91 16 10 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.18 4.35 4.79 -3.07 -0.01 4.33 16 15 C 0.13 2.42 2.51 -66.10 -0.17 2.26 16 16 H 0.09 1.75 7.60 -51.93 -0.39 1.36 16 17 N -0.71 -11.83 4.55 -52.03 -0.24 -12.07 16 18 C 0.51 9.27 6.94 -10.98 -0.08 9.20 16 19 O -0.52 -12.02 16.25 -14.02 -0.23 -12.25 16 20 C 0.06 0.87 3.84 -27.31 -0.10 0.76 16 21 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 22 C -0.15 -1.79 6.62 -25.20 -0.17 -1.96 16 23 C -0.15 -1.67 7.16 -24.72 -0.18 -1.85 16 24 C 0.04 0.49 7.72 38.21 0.29 0.78 16 25 O -0.35 -5.48 10.75 -54.80 -0.59 -6.07 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.58 6.38 -51.93 -0.33 0.25 16 29 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 33 H 0.01 0.28 7.99 -51.93 -0.41 -0.14 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.05 1.49 7.38 -51.92 -0.38 1.11 16 36 H 0.05 1.35 7.41 -51.93 -0.38 0.97 16 37 H 0.39 5.48 6.90 -40.82 -0.28 5.20 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.32 7.69 -51.93 -0.40 0.92 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -33.91 340.09 -8.33 -42.24 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.19 Total: 3.34 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.18 Total: 4.90 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.24 Total: -54.48 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.82 Total: -18.32 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.91 -8.33 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972790004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.185 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds