Wall clock time and date at job start Tue Mar 31 2020 01:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53011 * 110.91306 * 2 1 4 4 C 1.54905 * 111.00780 * 236.09858 * 2 1 3 5 5 N 1.47431 * 104.83206 * 204.91558 * 4 2 1 6 6 C 1.36933 * 125.64467 * 204.16446 * 5 4 2 7 7 H 1.07997 * 120.00663 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99607 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00121 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99911 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47131 * 59.99799 * 10 8 6 12 12 H 1.48501 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47319 * 299.99411 * 10 8 6 14 14 C 1.47020 * 108.69971 * 24.12786 * 5 4 2 15 15 C 1.54324 * 107.27629 * 358.93958 * 14 5 4 16 16 H 1.09003 * 110.71892 * 219.26969 * 15 14 5 17 17 N 1.46497 * 110.72034 * 96.16885 * 15 14 5 18 18 C 1.34777 * 119.99525 * 86.45336 * 17 15 14 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 15 21 21 H 1.09004 * 109.87193 * 304.57172 * 20 18 17 22 22 C 1.54094 * 109.88163 * 65.58358 * 20 18 17 23 23 C 1.54815 * 104.18847 * 121.45356 * 22 20 18 24 24 C 1.54990 * 102.09151 * 20.88210 * 23 22 20 25 25 O 1.43743 * 109.87789 * 183.56955 * 20 18 17 26 26 H 1.08994 * 109.47533 * 296.10196 * 1 2 3 27 27 H 1.09003 * 109.47407 * 56.10155 * 1 2 3 28 28 H 1.09002 * 109.47322 * 176.10015 * 1 2 3 29 29 H 1.08996 * 109.46957 * 183.90123 * 3 2 1 30 30 H 1.09002 * 109.46885 * 303.89945 * 3 2 1 31 31 H 1.08998 * 109.47267 * 63.90262 * 3 2 1 32 32 H 1.08999 * 110.36513 * 86.07785 * 4 2 1 33 33 H 1.08999 * 110.45872 * 323.80023 * 4 2 1 34 34 H 0.96999 * 120.00087 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.87889 * 239.51844 * 14 5 4 36 36 H 1.08996 * 109.88094 * 118.36421 * 14 5 4 37 37 H 0.97000 * 120.00580 * 266.46082 * 17 15 14 38 38 H 1.08997 * 110.49157 * 240.13257 * 22 20 18 39 39 H 1.09001 * 110.49028 * 2.64537 * 22 20 18 40 40 H 1.09005 * 110.90426 * 139.08309 * 23 22 20 41 41 H 1.09004 * 110.90577 * 262.64704 * 23 22 20 42 42 H 1.09000 * 110.62010 * 81.47835 * 24 23 22 43 43 H 1.09002 * 110.61957 * 204.47677 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0761 1.4293 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2430 -0.7732 6 6 4.4645 -1.5652 -1.6070 7 1 4.3340 -1.5098 -2.6777 8 6 5.6838 -1.9630 -1.0761 9 7 5.8431 -2.0300 0.2287 10 14 7.0987 -2.4033 -2.2135 11 1 7.4402 -1.2291 -3.0561 12 1 8.2817 -2.7922 -1.4044 13 1 6.6993 -3.5380 -3.0841 14 6 3.4674 -1.2740 0.6961 15 6 2.0860 -0.8078 1.2023 16 1 2.1919 -0.1723 2.0816 17 7 1.2267 -1.9573 1.4962 18 6 1.2806 -2.5467 2.7071 19 8 2.0402 -2.1252 3.5535 20 6 0.3923 -3.7253 3.0116 21 1 -0.6497 -3.4599 2.8326 22 6 0.7877 -4.9224 2.1255 23 6 1.1475 -6.0394 3.1352 24 6 0.4178 -5.5652 4.4177 25 8 0.5659 -4.1275 4.3806 26 1 -0.3634 0.4521 0.9228 27 1 -0.3634 0.5732 -0.8530 28 1 -0.3634 -1.0253 -0.0699 29 1 3.1635 1.4027 -0.0699 30 1 1.6704 1.9733 -0.8530 31 1 1.7835 1.9301 0.9229 32 1 2.1560 -0.1719 -2.0836 33 1 1.4525 -1.6703 -1.4042 34 1 6.6953 -2.3076 0.5997 35 1 4.2426 -0.5996 1.0601 36 1 3.6650 -2.2892 1.0402 37 1 0.6190 -2.2943 0.8194 38 1 -0.0515 -5.2285 1.5009 39 1 1.6501 -4.6714 1.5078 40 1 0.7624 -7.0033 2.8023 41 1 2.2247 -6.0872 3.2949 42 1 -0.6361 -5.8414 4.3841 43 1 0.8957 -5.9779 5.3061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972790004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:32 Heat of formation + Delta-G solvation = -80.353937 kcal Electronic energy + Delta-G solvation = -23784.241948 eV Core-core repulsion = 20443.090331 eV Total energy + Delta-G solvation = -3341.151618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.55435 -40.26247 -38.82241 -35.71528 -34.61090 -33.04744 -32.61149 -31.04404 -29.43182 -28.01044 -27.38927 -25.45276 -24.27355 -22.70025 -22.24970 -21.25563 -20.18349 -18.68595 -18.52592 -17.65147 -17.27867 -16.77417 -16.22936 -16.02488 -15.73645 -15.37436 -15.24963 -14.78120 -14.62656 -14.54378 -13.99066 -13.78211 -13.44868 -13.15875 -12.98211 -12.85125 -12.76431 -12.66931 -12.62366 -12.58206 -12.21070 -12.17237 -11.90498 -11.85063 -11.72671 -11.51621 -11.31355 -11.12981 -10.75791 -10.45915 -10.00555 -8.89352 -7.83289 -5.20345 1.42905 1.46633 1.53174 1.60399 1.97289 2.48876 3.05433 3.34581 3.45901 3.51190 3.70846 3.76220 3.86898 3.96995 4.03746 4.08417 4.27090 4.37514 4.40331 4.52878 4.68546 4.71793 4.77615 4.85998 4.89000 4.89956 4.96394 4.99189 5.05801 5.12465 5.14030 5.17547 5.31437 5.36742 5.45724 5.57131 5.68888 5.74536 5.81914 6.17130 6.59825 7.07532 7.29578 7.78119 8.42574 9.25586 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.006040 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.787751 B = 4634.267187 C = 5870.811040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C -0.124 4.124 4 C 0.138 3.862 5 N -0.619 5.619 6 C -0.236 4.236 7 H 0.089 0.911 8 C -0.071 4.071 9 N -0.955 5.955 10 Si 0.978 3.022 11 H -0.274 1.274 12 H -0.301 1.301 13 H -0.274 1.274 14 C 0.195 3.805 15 C 0.137 3.863 16 H 0.071 0.929 17 N -0.693 5.693 18 C 0.501 3.499 19 O -0.582 6.582 20 C 0.067 3.933 21 H 0.133 0.867 22 C -0.145 4.145 23 C -0.153 4.153 24 C 0.041 3.959 25 O -0.388 6.388 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.242 0.758 35 H 0.001 0.999 36 H -0.002 1.002 37 H 0.412 0.588 38 H 0.128 0.872 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.571 -4.004 0.717 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.075 4.075 3 C -0.182 4.182 4 C 0.014 3.986 5 N -0.345 5.345 6 C -0.365 4.365 7 H 0.106 0.894 8 C -0.264 4.264 9 N -0.604 5.604 10 Si 0.806 3.194 11 H -0.200 1.200 12 H -0.228 1.228 13 H -0.200 1.200 14 C 0.069 3.931 15 C 0.031 3.969 16 H 0.089 0.911 17 N -0.347 5.347 18 C 0.288 3.712 19 O -0.461 6.461 20 C 0.006 3.994 21 H 0.151 0.849 22 C -0.183 4.183 23 C -0.191 4.191 24 C -0.035 4.035 25 O -0.307 6.307 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.019 0.981 36 H 0.016 0.984 37 H 0.250 0.750 38 H 0.146 0.854 39 H 0.073 0.927 40 H 0.136 0.864 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.791 -3.634 1.497 18.220 hybrid contribution 1.638 -0.463 -0.571 1.795 sum -16.153 -4.097 0.926 16.691 Atomic orbital electron populations 1.21661 0.90511 1.02831 1.03148 1.21991 0.97519 0.95122 0.92867 1.21600 0.99912 0.94042 1.02635 1.21910 0.85425 0.95565 0.95734 1.44668 1.09362 1.78905 1.01576 1.19453 0.90189 1.37021 0.89805 0.89350 1.25700 1.00709 1.02771 0.97216 1.70252 1.24056 1.54928 1.11212 0.85161 0.78359 0.78397 0.77498 1.20036 1.22811 1.19966 1.21039 0.91899 0.96407 0.83770 1.22064 0.90336 0.87076 0.97430 0.91126 1.45723 1.42305 1.32307 1.14326 1.21320 0.83380 0.84630 0.81896 1.90690 1.41466 1.65394 1.48531 1.22778 0.99460 0.92952 0.84178 0.84938 1.23002 1.03635 0.93294 0.98394 1.23158 1.00856 1.00039 0.95021 1.23925 1.01616 0.78867 0.99063 1.89011 1.93611 1.23926 1.24155 0.91717 0.90161 0.91415 0.95351 0.90087 0.91758 0.93285 0.94720 0.94881 0.98133 0.98389 0.74990 0.85379 0.92717 0.86425 0.92928 0.88514 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 8.22 71.98 0.59 -1.98 16 2 C -0.07 -2.30 0.83 -50.79 -0.04 -2.34 16 3 C -0.12 -3.83 8.57 71.99 0.62 -3.21 16 4 C 0.14 5.17 6.14 86.85 0.53 5.70 16 5 N -0.62 -31.45 3.38 -691.98 -2.34 -33.79 16 6 C -0.24 -13.20 10.28 84.04 0.86 -12.34 16 7 H 0.09 4.63 7.83 -2.91 -0.02 4.60 16 8 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 9 N -0.96 -61.07 10.31 21.65 0.22 -60.85 16 10 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 14 C 0.20 10.32 4.79 86.73 0.42 10.73 16 15 C 0.14 5.41 2.51 46.18 0.12 5.52 16 16 H 0.07 3.03 7.60 -2.39 -0.02 3.01 16 17 N -0.69 -22.83 4.55 -436.91 -1.99 -24.82 16 18 C 0.50 18.49 6.94 87.66 0.61 19.09 16 19 O -0.58 -28.51 16.25 15.67 0.25 -28.25 16 20 C 0.07 1.77 3.84 30.22 0.12 1.89 16 21 H 0.13 2.35 8.14 -2.38 -0.02 2.33 16 22 C -0.15 -3.20 6.62 31.58 0.21 -2.99 16 23 C -0.15 -3.10 7.16 31.89 0.23 -2.87 16 24 C 0.04 0.81 7.72 72.66 0.56 1.38 16 25 O -0.39 -11.91 10.75 -130.27 -1.40 -13.31 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.19 6.38 -2.39 -0.02 1.18 16 29 H 0.03 1.09 7.91 -2.39 -0.02 1.07 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.77 8.05 -2.39 -0.02 1.75 16 33 H 0.04 1.19 7.99 -2.39 -0.02 1.17 16 34 H 0.24 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.00 0.03 7.38 -2.38 -0.02 0.01 16 36 H 0.00 -0.13 7.41 -2.39 -0.02 -0.15 16 37 H 0.41 10.43 6.90 -92.71 -0.64 9.79 16 38 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.60 7.69 -2.39 -0.02 1.59 16 40 H 0.12 1.53 8.14 -2.38 -0.02 1.52 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -82.58 340.09 2.41 -80.17 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.35 Total: 16.99 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.28 Total: 14.88 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -4.10 Total: -119.46 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.15 Total: -41.57 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -82.58 2.41 -80.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972790004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.181 kcal (2) G-P(sol) polarization free energy of solvation -82.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds