Wall clock time and date at job start Tue Mar 31 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 110.91348 * 2 1 4 4 C 1.54906 * 111.00484 * 236.09772 * 2 1 3 5 5 N 1.47423 * 104.83258 * 278.93223 * 4 2 1 6 6 C 1.36939 * 125.65055 * 155.91193 * 5 4 2 7 7 H 1.07996 * 119.99597 * 353.89893 * 6 5 4 8 8 C 1.38806 * 120.00166 * 173.89837 * 6 5 4 9 9 N 1.31619 * 120.00025 * 6.82734 * 8 6 5 10 10 Si 1.86801 * 120.00186 * 186.83208 * 8 6 5 11 11 H 1.48501 * 109.47003 * 94.98132 * 10 8 6 12 12 H 1.48494 * 109.47153 * 214.98667 * 10 8 6 13 13 H 1.48507 * 109.47022 * 334.98621 * 10 8 6 14 14 C 1.47486 * 108.75755 * 335.89354 * 5 4 2 15 15 C 1.54316 * 107.03611 * 1.02548 * 14 5 4 16 16 H 1.09004 * 110.72215 * 140.69113 * 15 14 5 17 17 N 1.46503 * 110.72150 * 263.78373 * 15 14 5 18 18 C 1.34774 * 120.00385 * 271.16278 * 17 15 14 19 19 O 1.21279 * 119.99750 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00172 * 179.97438 * 18 17 15 21 21 H 1.09005 * 110.45749 * 302.60394 * 20 18 17 22 22 C 1.54511 * 110.51282 * 179.97438 * 20 18 17 23 23 C 1.54479 * 104.06334 * 241.35295 * 22 20 18 24 24 O 1.44425 * 104.80374 * 23.97638 * 23 22 20 25 25 C 1.44430 * 105.27487 * 319.49006 * 24 23 22 26 26 H 1.08999 * 109.47023 * 296.09993 * 1 2 3 27 27 H 1.09003 * 109.46896 * 56.10079 * 1 2 3 28 28 H 1.09002 * 109.46827 * 176.09914 * 1 2 3 29 29 H 1.08997 * 109.46960 * 183.90192 * 3 2 1 30 30 H 1.09003 * 109.47308 * 303.89647 * 3 2 1 31 31 H 1.08996 * 109.46948 * 63.90195 * 3 2 1 32 32 H 1.08998 * 110.36885 * 37.77610 * 4 2 1 33 33 H 1.09007 * 110.36238 * 159.98854 * 4 2 1 34 34 H 0.97003 * 120.00351 * 179.97438 * 9 8 6 35 35 H 1.08999 * 110.03491 * 241.65957 * 14 5 4 36 36 H 1.09003 * 109.96401 * 120.34944 * 14 5 4 37 37 H 0.97002 * 119.99339 * 91.15518 * 17 15 14 38 38 H 1.08992 * 110.50951 * 359.97438 * 22 20 18 39 39 H 1.09004 * 110.50743 * 122.71021 * 22 20 18 40 40 H 1.08990 * 110.37041 * 142.81090 * 23 22 20 41 41 H 1.09005 * 110.37153 * 265.14945 * 23 22 20 42 42 H 1.08994 * 110.36988 * 281.67874 * 25 24 23 43 43 H 1.08999 * 110.36879 * 159.34389 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 2.0140 -2.2159 -0.7733 6 6 1.9462 -3.3000 -1.6071 7 1 1.8426 -3.1562 -2.6724 8 6 2.0108 -4.5837 -1.0830 9 7 2.0015 -4.7636 0.2208 10 14 2.1109 -6.0562 -2.2282 11 1 3.5326 -6.4423 -2.4148 12 1 1.3621 -7.1944 -1.6376 13 1 1.5175 -5.7021 -3.5428 14 6 2.0281 -2.2661 0.7007 15 6 2.0862 -0.8079 1.2022 16 1 1.4540 -0.6766 2.0805 17 7 3.4667 -0.4155 1.4963 18 6 3.9812 -0.6291 2.7235 19 8 3.3012 -1.1459 3.5845 20 6 5.4014 -0.2260 3.0258 21 1 6.0909 -0.7148 2.3374 22 6 5.7619 -0.5690 4.4886 23 6 6.0915 0.7996 5.1248 24 8 5.3875 1.7636 4.3118 25 6 5.5559 1.3092 2.9512 26 1 -0.3633 0.4521 0.9229 27 1 -0.3633 0.5732 -0.8530 28 1 -0.3633 -1.0253 -0.0699 29 1 3.1636 1.4026 -0.0699 30 1 1.6705 1.9733 -0.8530 31 1 1.7836 1.9300 0.9229 32 1 1.4673 -0.6461 -2.0837 33 1 3.1177 -0.5219 -1.4036 34 1 2.0462 -5.6607 0.5870 35 1 2.9052 -2.8126 1.0473 36 1 1.1207 -2.7477 1.0653 37 1 4.0104 -0.0019 0.8076 38 1 4.9128 -1.0297 4.9932 39 1 6.6312 -1.2258 4.5237 40 1 5.7326 0.8362 6.1532 41 1 7.1650 0.9856 5.0897 42 1 6.5471 1.5734 2.5830 43 1 4.7854 1.7375 2.3101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972844888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:38 Heat of formation + Delta-G solvation = -58.960795 kcal Electronic energy + Delta-G solvation = -23722.188447 eV Core-core repulsion = 20381.964506 eV Total energy + Delta-G solvation = -3340.223942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34191 -38.93726 -37.50038 -33.87168 -33.04411 -32.15845 -30.69766 -29.49497 -27.90625 -26.76699 -25.63387 -23.98735 -23.16206 -21.97927 -20.25113 -19.68945 -18.68580 -17.22936 -16.69228 -16.47918 -16.04012 -15.55156 -15.00745 -14.67699 -14.10652 -14.02090 -13.87622 -13.59903 -13.24484 -12.85658 -12.52505 -12.06419 -12.03072 -11.94679 -11.67679 -11.55802 -11.41932 -11.32583 -11.07855 -10.99055 -10.94028 -10.78610 -10.39924 -10.24582 -10.02390 -9.98184 -9.87702 -9.64007 -9.35464 -8.61989 -8.42433 -6.82162 -5.70391 -3.04212 2.97152 3.39899 3.44942 3.47637 3.51136 3.87726 4.39837 4.50003 4.75592 4.86776 4.95138 5.02406 5.11887 5.27215 5.31132 5.41016 5.45787 5.51347 5.53265 5.61534 5.66155 5.79703 5.81465 5.92648 6.03068 6.16845 6.17345 6.20659 6.24830 6.39440 6.58340 6.61608 6.63382 6.68065 6.76362 6.96409 7.54065 7.66895 7.82584 7.94950 8.25119 8.63246 9.21162 9.82617 10.48731 11.40734 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.005212 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.759922 B = 5371.330186 C = 6300.518305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.145 3.855 5 N -0.603 5.603 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.917 5.917 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.175 3.825 15 C 0.124 3.876 16 H 0.087 0.913 17 N -0.709 5.709 18 C 0.522 3.478 19 O -0.535 6.535 20 C -0.148 4.148 21 H 0.110 0.890 22 C -0.147 4.147 23 C 0.046 3.954 24 O -0.372 6.372 25 C 0.057 3.943 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.015 0.985 34 H 0.253 0.747 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.394 0.606 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 13.462 4.262 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.188 4.188 4 C 0.018 3.982 5 N -0.330 5.330 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.564 5.564 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.050 3.950 15 C 0.019 3.981 16 H 0.105 0.895 17 N -0.359 5.359 18 C 0.307 3.693 19 O -0.412 6.412 20 C -0.169 4.169 21 H 0.128 0.872 22 C -0.185 4.185 23 C -0.030 4.030 24 O -0.291 6.291 25 C -0.020 4.020 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.229 0.771 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.241 13.025 4.974 15.275 hybrid contribution 0.565 -0.996 -1.095 1.584 sum 6.806 12.029 3.879 14.355 Atomic orbital electron populations 1.21598 0.93315 1.02903 1.00532 1.22013 0.96360 0.94132 0.96619 1.21676 1.00133 0.95614 1.01413 1.21611 0.96508 0.85777 0.94265 1.44552 1.86902 0.99740 1.01777 1.19030 1.43630 0.83865 0.89398 0.90485 1.24823 1.02125 0.97367 0.95913 1.69980 1.56307 1.20643 1.09437 0.86154 0.77532 0.82725 0.79691 1.21722 1.21791 1.20653 1.21605 1.01527 0.88609 0.83268 1.22464 0.81108 0.97503 0.96993 0.89495 1.45961 1.15022 1.62569 1.12370 1.20074 0.88402 0.78450 0.82348 1.90667 1.61080 1.43089 1.46361 1.22721 0.96132 0.98131 0.99948 0.87224 1.22990 1.03755 0.98144 0.93575 1.23448 0.96200 0.87271 0.96126 1.89143 1.74845 1.48488 1.16606 1.23386 1.01952 0.91169 0.85534 0.93322 0.92890 0.91240 0.93144 0.92631 0.92792 0.94190 0.96743 0.93699 0.93075 0.93242 0.77098 0.87982 0.90139 0.88958 0.92354 0.91294 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.57 37.16 0.32 -1.69 16 2 C -0.09 -1.47 0.83 -152.36 -0.13 -1.60 16 3 C -0.13 -1.66 8.22 37.16 0.31 -1.36 16 4 C 0.14 2.83 6.14 -2.53 -0.02 2.81 16 5 N -0.60 -14.95 3.39 -169.71 -0.58 -15.52 16 6 C -0.23 -6.36 10.26 -15.06 -0.15 -6.51 16 7 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 8 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 9 N -0.92 -27.36 10.36 55.49 0.58 -26.78 16 10 Si 0.91 22.16 29.56 -169.99 -5.02 17.13 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.18 4.30 4.82 -2.81 -0.01 4.28 16 15 C 0.12 2.36 2.54 -66.10 -0.17 2.20 16 16 H 0.09 1.75 7.53 -51.93 -0.39 1.36 16 17 N -0.71 -11.60 4.32 -52.04 -0.22 -11.82 16 18 C 0.52 8.89 7.07 -10.99 -0.08 8.82 16 19 O -0.54 -11.33 14.97 5.56 0.08 -11.25 16 20 C -0.15 -1.85 3.51 -90.21 -0.32 -2.17 16 21 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 22 C -0.15 -1.76 6.67 -25.16 -0.17 -1.93 16 23 C 0.05 0.49 7.63 37.93 0.29 0.78 16 24 O -0.37 -4.86 11.65 -35.23 -0.41 -5.27 16 25 C 0.06 0.62 7.17 37.93 0.27 0.89 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 29 H 0.05 0.58 6.43 -51.93 -0.33 0.24 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.77 8.05 -51.93 -0.42 0.36 16 33 H 0.02 0.28 7.98 -51.93 -0.41 -0.13 16 34 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.05 1.44 7.27 -51.93 -0.38 1.06 16 36 H 0.05 1.38 7.56 -51.93 -0.39 0.98 16 37 H 0.39 5.48 7.01 -40.82 -0.29 5.19 16 38 H 0.10 1.50 6.50 -51.93 -0.34 1.16 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.99 7.71 -51.93 -0.40 0.59 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -33.06 337.88 -7.55 -40.61 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.11 Total: 3.55 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 0.05 Total: 4.27 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.23 Total: -54.13 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.33 Total: -16.53 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.06 -7.55 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972844888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.353 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds