Wall clock time and date at job start Tue Mar 31 2020 01:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 110.91348 * 2 1 4 4 C 1.54906 * 111.00484 * 236.09772 * 2 1 3 5 5 N 1.47423 * 104.83258 * 278.93223 * 4 2 1 6 6 C 1.36939 * 125.65055 * 155.91193 * 5 4 2 7 7 H 1.07996 * 119.99597 * 353.89893 * 6 5 4 8 8 C 1.38806 * 120.00166 * 173.89837 * 6 5 4 9 9 N 1.31619 * 120.00025 * 6.82734 * 8 6 5 10 10 Si 1.86801 * 120.00186 * 186.83208 * 8 6 5 11 11 H 1.48501 * 109.47003 * 94.98132 * 10 8 6 12 12 H 1.48494 * 109.47153 * 214.98667 * 10 8 6 13 13 H 1.48507 * 109.47022 * 334.98621 * 10 8 6 14 14 C 1.47486 * 108.75755 * 335.89354 * 5 4 2 15 15 C 1.54316 * 107.03611 * 1.02548 * 14 5 4 16 16 H 1.09004 * 110.72215 * 140.69113 * 15 14 5 17 17 N 1.46503 * 110.72150 * 263.78373 * 15 14 5 18 18 C 1.34774 * 120.00385 * 271.16278 * 17 15 14 19 19 O 1.21279 * 119.99750 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00172 * 179.97438 * 18 17 15 21 21 H 1.09005 * 110.45749 * 302.60394 * 20 18 17 22 22 C 1.54511 * 110.51282 * 179.97438 * 20 18 17 23 23 C 1.54479 * 104.06334 * 241.35295 * 22 20 18 24 24 O 1.44425 * 104.80374 * 23.97638 * 23 22 20 25 25 C 1.44430 * 105.27487 * 319.49006 * 24 23 22 26 26 H 1.08999 * 109.47023 * 296.09993 * 1 2 3 27 27 H 1.09003 * 109.46896 * 56.10079 * 1 2 3 28 28 H 1.09002 * 109.46827 * 176.09914 * 1 2 3 29 29 H 1.08997 * 109.46960 * 183.90192 * 3 2 1 30 30 H 1.09003 * 109.47308 * 303.89647 * 3 2 1 31 31 H 1.08996 * 109.46948 * 63.90195 * 3 2 1 32 32 H 1.08998 * 110.36885 * 37.77610 * 4 2 1 33 33 H 1.09007 * 110.36238 * 159.98854 * 4 2 1 34 34 H 0.97003 * 120.00351 * 179.97438 * 9 8 6 35 35 H 1.08999 * 110.03491 * 241.65957 * 14 5 4 36 36 H 1.09003 * 109.96401 * 120.34944 * 14 5 4 37 37 H 0.97002 * 119.99339 * 91.15518 * 17 15 14 38 38 H 1.08992 * 110.50951 * 359.97438 * 22 20 18 39 39 H 1.09004 * 110.50743 * 122.71021 * 22 20 18 40 40 H 1.08990 * 110.37041 * 142.81090 * 23 22 20 41 41 H 1.09005 * 110.37153 * 265.14945 * 23 22 20 42 42 H 1.08994 * 110.36988 * 281.67874 * 25 24 23 43 43 H 1.08999 * 110.36879 * 159.34389 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 2.0140 -2.2159 -0.7733 6 6 1.9462 -3.3000 -1.6071 7 1 1.8426 -3.1562 -2.6724 8 6 2.0108 -4.5837 -1.0830 9 7 2.0015 -4.7636 0.2208 10 14 2.1109 -6.0562 -2.2282 11 1 3.5326 -6.4423 -2.4148 12 1 1.3621 -7.1944 -1.6376 13 1 1.5175 -5.7021 -3.5428 14 6 2.0281 -2.2661 0.7007 15 6 2.0862 -0.8079 1.2022 16 1 1.4540 -0.6766 2.0805 17 7 3.4667 -0.4155 1.4963 18 6 3.9812 -0.6291 2.7235 19 8 3.3012 -1.1459 3.5845 20 6 5.4014 -0.2260 3.0258 21 1 6.0909 -0.7148 2.3374 22 6 5.7619 -0.5690 4.4886 23 6 6.0915 0.7996 5.1248 24 8 5.3875 1.7636 4.3118 25 6 5.5559 1.3092 2.9512 26 1 -0.3633 0.4521 0.9229 27 1 -0.3633 0.5732 -0.8530 28 1 -0.3633 -1.0253 -0.0699 29 1 3.1636 1.4026 -0.0699 30 1 1.6705 1.9733 -0.8530 31 1 1.7836 1.9300 0.9229 32 1 1.4673 -0.6461 -2.0837 33 1 3.1177 -0.5219 -1.4036 34 1 2.0462 -5.6607 0.5870 35 1 2.9052 -2.8126 1.0473 36 1 1.1207 -2.7477 1.0653 37 1 4.0104 -0.0019 0.8076 38 1 4.9128 -1.0297 4.9932 39 1 6.6312 -1.2258 4.5237 40 1 5.7326 0.8362 6.1532 41 1 7.1650 0.9856 5.0897 42 1 6.5471 1.5734 2.5830 43 1 4.7854 1.7375 2.3101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972844888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:37 Heat of formation + Delta-G solvation = -82.799433 kcal Electronic energy + Delta-G solvation = -23723.222168 eV Core-core repulsion = 20381.964506 eV Total energy + Delta-G solvation = -3341.257662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60540 -40.22631 -38.85905 -35.69819 -34.55018 -33.17872 -32.60723 -30.55349 -29.42761 -28.04418 -27.40990 -25.44217 -24.36853 -23.13587 -21.98624 -21.05575 -20.07325 -18.69845 -18.40265 -17.49660 -17.31984 -16.87047 -16.46101 -15.95617 -15.71465 -15.51261 -15.34859 -15.02126 -14.72183 -14.06010 -13.82103 -13.60662 -13.48133 -13.18308 -13.02711 -12.94317 -12.78591 -12.69683 -12.58970 -12.42616 -12.30037 -12.09804 -11.89850 -11.86092 -11.74358 -11.53137 -11.32299 -11.06042 -10.74852 -10.54934 -9.98273 -8.89091 -7.85629 -5.21241 1.43595 1.45276 1.54594 1.64346 2.19655 2.48552 3.03301 3.32949 3.42797 3.49336 3.70291 3.78544 3.94288 3.97947 4.06825 4.17995 4.30287 4.39849 4.46509 4.52794 4.65194 4.69363 4.75268 4.83823 4.84960 4.88599 4.93303 4.95696 5.05121 5.13237 5.16605 5.19753 5.32936 5.35061 5.46603 5.55616 5.69721 5.76273 5.81826 6.16331 6.60226 7.06548 7.30674 7.76736 8.42059 9.24388 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.005212 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.759922 B = 5371.330186 C = 6300.518305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 C -0.123 4.123 4 C 0.139 3.861 5 N -0.620 5.620 6 C -0.237 4.237 7 H 0.087 0.913 8 C -0.069 4.069 9 N -0.954 5.954 10 Si 0.976 3.024 11 H -0.288 1.288 12 H -0.300 1.300 13 H -0.263 1.263 14 C 0.193 3.807 15 C 0.137 3.863 16 H 0.071 0.929 17 N -0.698 5.698 18 C 0.513 3.487 19 O -0.586 6.586 20 C -0.143 4.143 21 H 0.133 0.867 22 C -0.150 4.150 23 C 0.048 3.952 24 O -0.399 6.399 25 C 0.060 3.940 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.243 0.757 35 H 0.005 0.995 36 H -0.002 1.002 37 H 0.410 0.590 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.653 16.221 2.601 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.076 4.076 3 C -0.181 4.181 4 C 0.015 3.985 5 N -0.347 5.347 6 C -0.366 4.366 7 H 0.105 0.895 8 C -0.261 4.261 9 N -0.603 5.603 10 Si 0.804 3.196 11 H -0.215 1.215 12 H -0.227 1.227 13 H -0.187 1.187 14 C 0.067 3.933 15 C 0.031 3.969 16 H 0.089 0.911 17 N -0.349 5.349 18 C 0.301 3.699 19 O -0.466 6.466 20 C -0.165 4.165 21 H 0.151 0.849 22 C -0.188 4.188 23 C -0.028 4.028 24 O -0.318 6.318 25 C -0.017 4.017 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.023 0.977 36 H 0.016 0.984 37 H 0.248 0.752 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.042 15.848 3.259 18.068 hybrid contribution -0.025 -1.860 -0.580 1.948 sum 8.018 13.988 2.680 16.344 Atomic orbital electron populations 1.21598 0.93062 1.00970 1.02559 1.21991 0.96559 0.95975 0.93106 1.21653 1.01175 0.92286 1.02987 1.21885 0.97808 0.83168 0.95672 1.44797 1.86590 1.01674 1.01613 1.19491 1.41913 0.84913 0.90240 0.89478 1.25682 1.02849 1.00366 0.97230 1.70249 1.58278 1.20332 1.11453 0.85090 0.77274 0.78853 0.78342 1.21499 1.22717 1.18741 1.21161 0.96958 0.91517 0.83670 1.22033 0.82882 0.94641 0.97360 0.91077 1.45799 1.14062 1.62130 1.12904 1.21031 0.90075 0.77158 0.81665 1.90651 1.62875 1.45222 1.47889 1.22808 0.92755 1.00175 1.00739 0.84901 1.23011 1.03205 0.99516 0.93099 1.23571 0.97761 0.85641 0.95810 1.89114 1.75683 1.49177 1.17853 1.23558 1.04180 0.89052 0.84868 0.91841 0.90200 0.95256 0.91460 0.90259 0.91930 0.93428 0.94774 0.94766 0.97677 0.98392 0.75194 0.91580 0.87932 0.88791 0.89216 0.87595 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.83 8.57 71.98 0.62 -3.21 16 2 C -0.07 -2.34 0.83 -50.79 -0.04 -2.38 16 3 C -0.12 -2.62 8.22 71.98 0.59 -2.03 16 4 C 0.14 5.21 6.14 86.85 0.53 5.75 16 5 N -0.62 -31.36 3.39 -690.83 -2.34 -33.70 16 6 C -0.24 -13.20 10.26 84.03 0.86 -12.34 16 7 H 0.09 4.58 7.84 -2.91 -0.02 4.56 16 8 C -0.07 -3.98 5.48 84.86 0.47 -3.52 16 9 N -0.95 -60.21 10.36 21.65 0.22 -59.98 16 10 Si 0.98 46.56 29.56 68.60 2.03 48.59 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 13 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 14 C 0.19 10.04 4.82 86.64 0.42 10.46 16 15 C 0.14 5.32 2.54 46.18 0.12 5.44 16 16 H 0.07 3.01 7.53 -2.38 -0.02 2.99 16 17 N -0.70 -22.41 4.32 -436.94 -1.89 -24.29 16 18 C 0.51 17.59 7.07 87.66 0.62 18.21 16 19 O -0.59 -26.17 14.97 -3.03 -0.05 -26.22 16 20 C -0.14 -3.35 3.51 -10.53 -0.04 -3.38 16 21 H 0.13 2.49 8.14 -2.38 -0.02 2.48 16 22 C -0.15 -3.45 6.67 31.61 0.21 -3.24 16 23 C 0.05 0.92 7.63 72.48 0.55 1.47 16 24 O -0.40 -9.47 11.65 -148.98 -1.74 -11.21 16 25 C 0.06 1.10 7.17 72.48 0.52 1.62 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.03 1.12 7.91 -2.39 -0.02 1.10 16 29 H 0.07 1.22 6.43 -2.39 -0.02 1.20 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.73 8.05 -2.39 -0.02 1.71 16 33 H 0.03 1.18 7.98 -2.38 -0.02 1.16 16 34 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.01 0.30 7.27 -2.39 -0.02 0.29 16 36 H 0.00 -0.13 7.56 -2.39 -0.02 -0.15 16 37 H 0.41 10.38 7.01 -92.71 -0.65 9.73 16 38 H 0.07 2.02 6.50 -2.39 -0.02 2.01 16 39 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 1.70 7.71 -2.39 -0.02 1.68 16 Total: -1.00 -78.35 337.88 2.01 -76.34 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.34 Total: 17.63 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 5.43 Total: 12.85 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -4.01 Total: -117.98 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.78 Total: -37.43 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.35 2.01 -76.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972844888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.458 kcal (2) G-P(sol) polarization free energy of solvation -78.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds