Wall clock time and date at job start Tue Mar 31 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.78026 * 2 1 4 4 C 1.54331 * 110.72002 * 236.76917 * 2 1 3 5 5 N 1.47027 * 107.26797 * 219.44595 * 4 2 1 6 6 C 1.36939 * 125.64277 * 179.20332 * 5 4 2 7 7 H 1.07997 * 120.00078 * 341.26107 * 6 5 4 8 8 C 1.38812 * 119.99603 * 161.26168 * 6 5 4 9 9 N 1.31620 * 119.99793 * 157.49871 * 8 6 5 10 10 Si 1.86799 * 120.00197 * 337.50370 * 8 6 5 11 11 H 1.48500 * 109.47046 * 84.53559 * 10 8 6 12 12 H 1.48499 * 109.47121 * 204.53520 * 10 8 6 13 13 H 1.48503 * 109.46914 * 324.53527 * 10 8 6 14 14 C 1.47421 * 108.70483 * 358.93527 * 5 4 2 15 15 C 1.54912 * 104.83312 * 24.13278 * 14 5 4 16 16 H 1.08997 * 111.00495 * 204.91946 * 15 14 5 17 17 N 1.46500 * 111.00401 * 81.06108 * 15 14 5 18 18 C 1.34782 * 119.99591 * 86.45818 * 17 15 14 19 19 O 1.21274 * 119.99935 * 359.97438 * 18 17 15 20 20 C 1.50692 * 119.99573 * 179.97438 * 18 17 15 21 21 H 1.09002 * 110.75761 * 59.30099 * 20 18 17 22 22 C 1.55309 * 110.84671 * 182.76847 * 20 18 17 23 23 C 1.55213 * 100.82690 * 152.17980 * 22 20 18 24 24 O 1.43649 * 105.25638 * 323.81921 * 23 22 20 25 25 C 1.43231 * 109.97298 * 24.28430 * 24 23 22 26 26 H 1.09000 * 109.46774 * 296.76006 * 1 2 3 27 27 H 1.09006 * 109.47108 * 56.75442 * 1 2 3 28 28 H 1.08995 * 109.47301 * 176.75505 * 1 2 3 29 29 H 1.09002 * 109.46691 * 183.23829 * 3 2 1 30 30 H 1.08996 * 109.47700 * 303.24645 * 3 2 1 31 31 H 1.09008 * 109.46513 * 63.24611 * 3 2 1 32 32 H 1.08995 * 109.88399 * 100.02634 * 4 2 1 33 33 H 1.09005 * 109.87482 * 338.85497 * 4 2 1 34 34 H 0.96999 * 120.00297 * 180.02562 * 9 8 6 35 35 H 1.08998 * 110.36722 * 142.96703 * 14 5 4 36 36 H 1.09002 * 110.36783 * 265.18212 * 14 5 4 37 37 H 0.97003 * 120.00207 * 266.45266 * 17 15 14 38 38 H 1.08999 * 111.12894 * 270.24259 * 22 20 18 39 39 H 1.09000 * 111.12262 * 34.40872 * 22 20 18 40 40 H 1.08997 * 110.36637 * 204.80313 * 23 22 20 41 41 H 1.09000 * 110.21233 * 82.75458 * 23 22 20 42 42 H 1.09004 * 109.83085 * 238.76741 * 25 24 23 43 43 H 1.09004 * 109.90521 * 117.85015 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2074 5 7 3.2445 -1.5507 -0.7392 6 6 4.0069 -2.3935 -1.5032 7 1 3.6159 -2.7830 -2.4315 8 6 5.2823 -2.7470 -1.0845 9 7 5.8402 -3.8509 -1.5345 10 14 6.2066 -1.6561 0.1175 11 1 5.8010 -1.9942 1.5055 12 1 7.6672 -1.8743 -0.0384 13 1 5.8865 -0.2326 -0.1590 14 6 3.4633 -1.2499 0.6873 15 6 2.0790 -0.7956 1.2137 16 1 2.1850 -0.1520 2.0870 17 7 1.2271 -1.9490 1.5142 18 6 1.2972 -2.5417 2.7227 19 8 2.0657 -2.1205 3.5610 20 6 0.4206 -3.7277 3.0320 21 1 0.6126 -4.5426 2.3339 22 6 0.6230 -4.1971 4.4985 23 6 -0.7637 -4.8270 4.7972 24 8 -1.7118 -3.9994 4.1046 25 6 -1.0706 -3.3285 3.0136 26 1 -0.3633 0.4627 0.9176 27 1 -0.3634 0.5634 -0.8595 28 1 -0.3633 -1.0260 -0.0582 29 1 3.1610 1.4061 -0.0581 30 1 1.6750 1.9701 -0.8594 31 1 1.7691 1.9342 0.9178 32 1 2.3741 -0.1022 -1.9978 33 1 1.3129 -1.4757 -1.5777 34 1 6.7313 -4.0982 -1.2416 35 1 3.7960 -2.1427 1.2166 36 1 4.1946 -0.4493 0.7984 37 1 0.6127 -2.2860 0.8435 38 1 1.4182 -4.9395 4.5672 39 1 0.8193 -3.3518 5.1580 40 1 -0.9629 -4.8153 5.8687 41 1 -0.8036 -5.8477 4.4167 42 1 -1.1661 -2.2496 3.1354 43 1 -1.5241 -3.6356 2.0711 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972844890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:42 Heat of formation + Delta-G solvation = -58.256864 kcal Electronic energy + Delta-G solvation = -23804.460800 eV Core-core repulsion = 20464.267383 eV Total energy + Delta-G solvation = -3340.193417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47253 -39.22642 -37.82682 -34.03469 -33.28302 -32.32309 -31.32975 -29.68372 -28.29729 -26.97753 -26.16762 -24.00168 -22.90517 -22.17263 -20.84553 -19.96378 -18.92299 -17.45889 -16.80089 -16.72316 -16.13723 -15.61136 -15.32703 -14.95665 -14.26495 -14.07834 -13.94437 -13.69483 -13.46696 -13.26773 -12.94270 -12.61431 -12.37416 -12.29746 -12.08363 -11.71092 -11.60265 -11.54741 -11.45635 -11.13124 -11.07621 -10.80021 -10.70301 -10.27614 -10.20026 -10.18277 -9.83909 -9.55298 -9.46308 -8.85601 -8.57057 -7.05218 -5.96571 -3.26655 2.74466 3.26644 3.39297 3.48981 3.49933 3.69882 4.19054 4.54794 4.66405 4.70402 4.73860 4.88121 4.95836 5.05976 5.07164 5.10621 5.17372 5.42280 5.46962 5.50743 5.55030 5.59790 5.64458 5.74384 5.77675 5.85923 5.92760 6.00456 6.02481 6.09806 6.21765 6.33529 6.37027 6.54287 6.60371 6.72451 6.73167 6.85908 7.65358 7.73408 8.29122 8.39095 8.81153 9.67526 10.15754 11.19388 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.006054 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.684334 B = 4623.644497 C = 5492.120032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.142 3.858 5 N -0.605 5.605 6 C -0.242 4.242 7 H 0.092 0.908 8 C 0.025 3.975 9 N -0.908 5.908 10 Si 0.877 3.123 11 H -0.284 1.284 12 H -0.302 1.302 13 H -0.276 1.276 14 C 0.105 3.895 15 C 0.140 3.860 16 H 0.092 0.908 17 N -0.703 5.703 18 C 0.525 3.475 19 O -0.539 6.539 20 C -0.149 4.149 21 H 0.114 0.886 22 C -0.135 4.135 23 C 0.050 3.950 24 O -0.382 6.382 25 C 0.066 3.934 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.401 0.599 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.785 3.703 8.183 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.332 5.332 6 C -0.369 4.369 7 H 0.109 0.891 8 C -0.174 4.174 9 N -0.551 5.551 10 Si 0.708 3.292 11 H -0.210 1.210 12 H -0.230 1.230 13 H -0.202 1.202 14 C -0.021 4.021 15 C 0.034 3.966 16 H 0.110 0.890 17 N -0.354 5.354 18 C 0.311 3.689 19 O -0.416 6.416 20 C -0.170 4.170 21 H 0.132 0.868 22 C -0.173 4.173 23 C -0.026 4.026 24 O -0.302 6.302 25 C -0.011 4.011 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.237 0.763 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.247 3.861 8.749 17.159 hybrid contribution 0.845 0.304 0.086 0.902 sum -13.402 4.164 8.836 16.584 Atomic orbital electron populations 1.21720 0.93971 1.01472 1.01736 1.21876 0.95449 0.95805 0.95716 1.21727 1.01817 0.93980 1.01403 1.21487 0.90222 0.92947 0.93661 1.44756 1.32393 1.51335 1.04745 1.18596 0.94811 1.18297 1.05215 0.89055 1.24971 0.96784 0.97322 0.98317 1.69836 1.16528 1.21687 1.47085 0.87054 0.78751 0.82028 0.81399 1.21042 1.22979 1.20230 1.22319 0.93896 0.99190 0.86718 1.22147 0.91178 0.86479 0.96808 0.88999 1.45847 1.42246 1.32516 1.14755 1.20062 0.83146 0.83683 0.82057 1.90694 1.39122 1.64448 1.47380 1.22939 0.95592 0.98146 1.00338 0.86822 1.23202 0.97719 1.02171 0.94228 1.23483 0.87344 0.94216 0.97560 1.88392 1.34989 1.62060 1.44737 1.23040 0.89590 0.97671 0.90849 0.92594 0.92220 0.92726 0.91926 0.92116 0.92799 0.94785 0.94956 0.92727 0.91980 0.94958 0.76348 0.89225 0.88929 0.89446 0.91895 0.90879 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.07 37.16 0.30 -1.16 16 2 C -0.09 -1.28 0.81 -152.67 -0.12 -1.40 16 3 C -0.13 -1.78 8.41 37.16 0.31 -1.47 16 4 C 0.14 2.61 6.41 -3.06 -0.02 2.59 16 5 N -0.61 -14.15 3.21 -170.07 -0.55 -14.69 16 6 C -0.24 -6.77 10.57 -15.06 -0.16 -6.93 16 7 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 8 C 0.02 0.73 5.43 -17.43 -0.09 0.63 16 9 N -0.91 -28.08 13.97 55.49 0.78 -27.30 16 10 Si 0.88 23.15 24.27 -169.99 -4.13 19.02 16 11 H -0.28 -7.50 6.49 56.52 0.37 -7.13 16 12 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 13 H -0.28 -7.11 6.66 56.52 0.38 -6.74 16 14 C 0.10 2.33 4.08 -2.53 -0.01 2.32 16 15 C 0.14 2.38 2.56 -65.78 -0.17 2.21 16 16 H 0.09 1.57 7.63 -51.93 -0.40 1.18 16 17 N -0.70 -10.65 4.67 -51.73 -0.24 -10.89 16 18 C 0.53 8.30 7.01 -10.99 -0.08 8.22 16 19 O -0.54 -10.52 15.47 5.56 0.09 -10.43 16 20 C -0.15 -1.81 3.38 -89.83 -0.30 -2.11 16 21 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 22 C -0.14 -1.55 6.28 -24.33 -0.15 -1.70 16 23 C 0.05 0.49 7.78 38.33 0.30 0.79 16 24 O -0.38 -4.57 11.36 -35.23 -0.40 -4.97 16 25 C 0.07 0.70 7.38 37.88 0.28 0.98 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.57 6.35 -51.93 -0.33 0.24 16 29 H 0.06 0.99 7.58 -51.93 -0.39 0.59 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 32 H 0.03 0.64 7.84 -51.93 -0.41 0.23 16 33 H 0.03 0.57 7.76 -51.93 -0.40 0.17 16 34 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 35 H 0.06 1.57 6.66 -51.93 -0.35 1.23 16 36 H 0.03 0.76 5.21 -51.93 -0.27 0.49 16 37 H 0.40 5.25 6.89 -40.82 -0.28 4.97 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.19 7.42 -51.93 -0.39 0.80 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.78 7.81 -51.93 -0.41 0.38 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -33.48 332.17 -6.40 -39.89 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.04 Total: 1.41 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 0.08 Total: 2.97 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.01 Total: -52.89 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.31 Total: -15.40 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.13 Total: 19.02 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.48 -6.40 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972844890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.371 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds