Wall clock time and date at job start Tue Mar 31 2020 01:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 110.92038 * 2 1 4 4 C 1.55130 * 111.19190 * 236.08702 * 2 1 3 5 5 N 1.47424 * 104.72492 * 279.19226 * 4 2 1 6 6 C 1.36939 * 125.64823 * 155.81613 * 5 4 2 7 7 H 1.07997 * 120.00108 * 8.87128 * 6 5 4 8 8 C 1.38815 * 119.99561 * 188.87194 * 6 5 4 9 9 N 1.31622 * 119.99457 * 195.41927 * 8 6 5 10 10 Si 1.86792 * 120.00214 * 15.69258 * 8 6 5 11 11 H 1.48502 * 109.47024 * 174.14594 * 10 8 6 12 12 H 1.48495 * 109.47026 * 294.14337 * 10 8 6 13 13 H 1.48495 * 109.47483 * 54.14576 * 10 8 6 14 14 C 1.47016 * 108.70143 * 335.55151 * 5 4 2 15 15 C 1.54327 * 107.27500 * 1.28616 * 14 5 4 16 16 H 1.08995 * 110.71952 * 140.55072 * 15 14 5 17 17 N 1.46496 * 110.72013 * 263.65581 * 15 14 5 18 18 C 1.34776 * 119.99619 * 273.54025 * 17 15 14 19 19 O 1.21284 * 120.00116 * 0.02562 * 18 17 15 20 20 C 1.50705 * 119.99958 * 180.02562 * 18 17 15 21 21 H 1.08994 * 110.74920 * 62.02193 * 20 18 17 22 22 C 1.55312 * 110.84565 * 185.71484 * 20 18 17 23 23 C 1.54947 * 100.93620 * 152.32453 * 22 20 18 24 24 O 1.43640 * 105.13932 * 323.55458 * 23 22 20 25 25 C 1.43233 * 109.97097 * 24.42804 * 24 23 22 26 26 H 1.09000 * 109.47275 * 296.09871 * 1 2 3 27 27 H 1.09003 * 109.47457 * 56.09795 * 1 2 3 28 28 H 1.08996 * 109.47426 * 176.09873 * 1 2 3 29 29 H 1.08997 * 109.47719 * 183.90289 * 3 2 1 30 30 H 1.09005 * 109.46844 * 303.90426 * 3 2 1 31 31 H 1.09000 * 109.47202 * 63.89855 * 3 2 1 32 32 H 1.08999 * 110.49963 * 160.35246 * 4 2 1 33 33 H 1.09002 * 110.34217 * 37.95668 * 4 2 1 34 34 H 0.97005 * 120.00151 * 2.67938 * 9 8 6 35 35 H 1.09005 * 109.88282 * 120.70288 * 14 5 4 36 36 H 1.09000 * 109.88510 * 241.70874 * 14 5 4 37 37 H 0.96994 * 120.00590 * 93.54350 * 17 15 14 38 38 H 1.08994 * 111.12110 * 270.24182 * 22 20 18 39 39 H 1.08995 * 111.12548 * 34.40511 * 22 20 18 40 40 H 1.09006 * 110.30838 * 204.63797 * 23 22 20 41 41 H 1.09002 * 110.39188 * 82.51464 * 23 22 20 42 42 H 1.09009 * 109.83331 * 238.77603 * 25 24 23 43 43 H 1.08999 * 109.90545 * 117.84562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0907 -0.8070 -1.2003 5 7 2.0138 -2.2159 -0.7733 6 6 1.9459 -3.3000 -1.6072 7 1 2.0896 -3.1736 -2.6701 8 6 1.6924 -4.5615 -1.0862 9 7 1.9228 -5.6329 -1.8152 10 14 1.0170 -4.7380 0.6464 11 1 0.7019 -6.1648 0.9118 12 1 2.0305 -4.2649 1.6232 13 1 -0.2181 -3.9249 0.7815 14 6 2.0284 -2.2647 0.6960 15 6 2.0861 -0.8079 1.2023 16 1 1.4523 -0.6792 2.0796 17 7 3.4662 -0.4170 1.5001 18 6 3.9937 -0.6781 2.7125 19 8 3.3261 -1.2372 3.5568 20 6 5.4132 -0.2755 3.0192 21 1 5.5301 0.8063 2.9557 22 6 5.8479 -0.8018 4.4143 23 6 7.3781 -0.9391 4.2130 24 8 7.5398 -1.3810 2.8559 25 6 6.4035 -0.9915 2.0758 26 1 -0.3634 0.4521 0.9229 27 1 -0.3634 0.5732 -0.8530 28 1 -0.3634 -1.0252 -0.0699 29 1 3.1636 1.4025 -0.0699 30 1 1.6704 1.9732 -0.8530 31 1 1.7836 1.9299 0.9229 32 1 3.1252 -0.5267 -1.3988 33 1 1.4763 -0.6450 -2.0860 34 1 2.3061 -5.5432 -2.7017 35 1 1.1217 -2.7480 1.0599 36 1 2.9047 -2.8141 1.0400 37 1 4.0002 0.0298 0.8249 38 1 5.6178 -0.0782 5.1962 39 1 5.3917 -1.7681 4.6292 40 1 7.7856 -1.6782 4.9028 41 1 7.8681 0.0237 4.3583 42 1 5.9309 -1.8740 1.6445 43 1 6.7138 -0.3128 1.2814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972844891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:44 Heat of formation + Delta-G solvation = -50.233013 kcal Electronic energy + Delta-G solvation = -23877.012930 eV Core-core repulsion = 20537.167454 eV Total energy + Delta-G solvation = -3339.845477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54847 -39.24563 -37.87392 -34.15882 -33.30032 -32.36368 -31.33325 -29.70000 -28.26926 -26.97979 -26.07896 -23.94138 -22.88717 -22.12030 -20.77955 -20.05662 -18.99322 -17.54904 -17.28781 -16.81510 -16.17372 -15.56787 -15.39084 -14.91328 -14.54506 -14.23724 -13.78122 -13.72948 -13.45052 -13.22268 -13.09512 -12.64156 -12.41637 -12.26463 -11.98033 -11.72955 -11.62505 -11.55542 -11.48433 -11.14870 -11.05801 -10.82022 -10.68893 -10.21469 -10.11284 -9.88279 -9.59916 -9.48571 -9.08464 -8.84972 -8.52316 -7.04255 -6.30468 -3.20885 2.64611 3.16055 3.50554 3.51449 3.70837 3.73885 4.12004 4.57948 4.63457 4.67347 4.71379 4.90122 4.93588 5.00871 5.05060 5.07611 5.18822 5.45260 5.50082 5.51642 5.54009 5.60683 5.64330 5.72553 5.73570 5.82120 5.91703 5.97923 6.00854 6.07297 6.22404 6.35152 6.43626 6.47476 6.50175 6.70782 6.76630 6.85860 7.56797 7.66768 8.28301 8.33787 9.04279 9.56970 10.22612 11.20568 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.006426 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.024621 B = 4356.444751 C = 5210.744489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.131 4.131 4 C 0.145 3.855 5 N -0.609 5.609 6 C -0.323 4.323 7 H 0.078 0.922 8 C -0.019 4.019 9 N -0.927 5.927 10 Si 1.066 2.934 11 H -0.301 1.301 12 H -0.285 1.285 13 H -0.297 1.297 14 C 0.107 3.893 15 C 0.141 3.859 16 H 0.094 0.906 17 N -0.710 5.710 18 C 0.523 3.477 19 O -0.534 6.534 20 C -0.147 4.147 21 H 0.110 0.890 22 C -0.135 4.135 23 C 0.050 3.950 24 O -0.380 6.380 25 C 0.061 3.939 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.048 0.952 34 H 0.261 0.739 35 H 0.036 0.964 36 H 0.048 0.952 37 H 0.399 0.601 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 17.015 9.223 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 C -0.189 4.189 4 C 0.019 3.981 5 N -0.337 5.337 6 C -0.450 4.450 7 H 0.096 0.904 8 C -0.219 4.219 9 N -0.568 5.568 10 Si 0.900 3.100 11 H -0.229 1.229 12 H -0.212 1.212 13 H -0.226 1.226 14 C -0.019 4.019 15 C 0.036 3.964 16 H 0.112 0.888 17 N -0.362 5.362 18 C 0.308 3.692 19 O -0.411 6.411 20 C -0.168 4.168 21 H 0.128 0.872 22 C -0.173 4.173 23 C -0.026 4.026 24 O -0.299 6.299 25 C -0.016 4.016 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.235 0.765 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.302 15.292 10.784 19.449 hybrid contribution 0.525 1.510 -1.484 2.181 sum 5.827 16.803 9.301 20.070 Atomic orbital electron populations 1.21629 0.92944 1.03069 1.01035 1.22109 0.96633 0.94475 0.96022 1.21675 1.00251 0.95193 1.01739 1.21729 0.96987 0.84862 0.94543 1.44764 1.87589 1.01375 0.99925 1.20117 1.48376 0.85603 0.90874 0.90373 1.25757 0.99669 0.90668 1.05800 1.70913 1.44880 1.28770 1.12273 0.83887 0.76528 0.73692 0.75905 1.22945 1.21187 1.22637 1.22354 0.99354 0.94075 0.86128 1.22033 0.81848 0.94869 0.97601 0.88801 1.46011 1.14908 1.60839 1.14416 1.20129 0.88108 0.78798 0.82147 1.90714 1.61934 1.41464 1.46960 1.22929 0.93316 1.02588 0.97981 0.87166 1.23162 0.95072 1.03840 0.95227 1.23431 0.95359 0.99897 0.83961 1.88428 1.41283 1.79553 1.20630 1.23105 0.85572 0.99567 0.93326 0.93019 0.92317 0.91351 0.92948 0.92222 0.92640 0.95969 0.93369 0.92881 0.94676 0.93418 0.76503 0.89415 0.88756 0.89390 0.92055 0.90246 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.59 37.15 0.32 -1.58 16 2 C -0.09 -1.36 0.84 -152.24 -0.13 -1.49 16 3 C -0.13 -1.45 8.22 37.16 0.31 -1.14 16 4 C 0.14 2.71 6.15 -2.41 -0.01 2.69 16 5 N -0.61 -14.53 3.32 -169.93 -0.56 -15.10 16 6 C -0.32 -9.19 10.55 -15.06 -0.16 -9.35 16 7 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 8 C -0.02 -0.58 5.49 -17.43 -0.10 -0.67 16 9 N -0.93 -29.55 13.71 55.49 0.76 -28.79 16 10 Si 1.07 28.05 24.54 -169.99 -4.17 23.88 16 11 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 12 H -0.28 -7.23 5.45 56.52 0.31 -6.92 16 13 H -0.30 -7.46 6.84 56.52 0.39 -7.08 16 14 C 0.11 2.39 4.05 -3.07 -0.01 2.38 16 15 C 0.14 2.42 2.50 -66.09 -0.17 2.26 16 16 H 0.09 1.63 7.60 -51.93 -0.39 1.24 16 17 N -0.71 -10.24 4.52 -52.03 -0.24 -10.47 16 18 C 0.52 7.81 7.02 -10.98 -0.08 7.73 16 19 O -0.53 -10.06 15.49 5.55 0.09 -9.98 16 20 C -0.15 -1.63 3.39 -89.82 -0.30 -1.93 16 21 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 22 C -0.14 -1.45 6.23 -24.48 -0.15 -1.60 16 23 C 0.05 0.49 7.78 38.18 0.30 0.79 16 24 O -0.38 -4.98 11.36 -35.23 -0.40 -5.38 16 25 C 0.06 0.74 7.34 37.88 0.28 1.02 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 29 H 0.05 0.52 6.39 -51.93 -0.33 0.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.40 7.99 -51.93 -0.41 -0.01 16 33 H 0.05 0.91 8.06 -51.93 -0.42 0.50 16 34 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 35 H 0.04 0.86 3.72 -51.93 -0.19 0.67 16 36 H 0.05 1.19 6.73 -51.93 -0.35 0.84 16 37 H 0.40 4.78 6.91 -40.82 -0.28 4.50 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.23 7.47 -51.93 -0.39 0.85 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 1.14 7.81 -51.92 -0.41 0.74 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -34.42 331.12 -6.52 -40.94 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.08 Total: 0.82 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 0.09 Total: -0.91 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.04 Total: -54.36 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.31 Total: -15.36 kcal Atomic # 14 Polarization: 28.05 SS G_CDS: -4.17 Total: 23.88 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.42 -6.52 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972844891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.294 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds