Wall clock time and date at job start Tue Mar 31 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46987 * 2 1 4 4 C 1.53005 * 109.46655 * 240.00459 * 2 1 3 5 5 C 1.50697 * 109.47143 * 120.00573 * 2 1 3 6 6 O 1.20778 * 119.99917 * 359.97438 * 5 2 1 7 7 C 1.49084 * 119.99696 * 180.02562 * 5 2 1 8 8 O 1.21370 * 120.00498 * 6.69994 * 7 5 2 9 9 N 1.34778 * 119.99980 * 186.69880 * 7 5 2 10 10 C 1.48212 * 119.97059 * 177.22670 * 9 7 5 11 11 C 1.47139 * 110.34238 * 102.51719 * 10 9 7 12 12 C 1.53796 * 111.84215 * 58.29298 * 11 10 9 13 13 N 1.43460 * 107.96200 * 281.66942 * 12 11 10 14 14 C 1.36942 * 118.94014 * 273.60842 * 13 12 11 15 15 H 1.07998 * 119.99410 * 25.87674 * 14 13 12 16 16 C 1.38803 * 120.00126 * 205.87099 * 14 13 12 17 17 N 1.31616 * 119.99985 * 16.34680 * 16 14 13 18 18 Si 1.86804 * 120.00128 * 196.34596 * 16 14 13 19 19 H 1.48494 * 109.46903 * 265.28402 * 18 16 14 20 20 H 1.48499 * 109.46827 * 145.28187 * 18 16 14 21 21 H 1.48500 * 109.46704 * 25.28529 * 18 16 14 22 22 C 1.48856 * 122.12028 * 93.88897 * 13 12 11 23 23 C 1.43624 * 119.96724 * 357.24993 * 9 7 5 24 24 H 1.09007 * 109.47083 * 299.99722 * 1 2 3 25 25 H 1.08995 * 109.47536 * 59.99638 * 1 2 3 26 26 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47114 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47767 * 300.00445 * 3 2 1 29 29 H 1.09001 * 109.47029 * 60.00657 * 3 2 1 30 30 H 1.08998 * 109.46869 * 299.99507 * 4 2 1 31 31 H 1.08998 * 109.47044 * 60.00201 * 4 2 1 32 32 H 1.09000 * 109.46591 * 179.97438 * 4 2 1 33 33 H 1.08995 * 109.32697 * 342.25020 * 10 9 7 34 34 H 1.09003 * 109.18570 * 222.69057 * 10 9 7 35 35 H 1.09002 * 109.00340 * 297.69106 * 11 10 9 36 36 H 1.08996 * 108.94683 * 178.86544 * 11 10 9 37 37 H 1.09001 * 109.76021 * 162.05264 * 12 11 10 38 38 H 1.09001 * 109.80808 * 41.31063 * 12 11 10 39 39 H 0.97006 * 120.00206 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.47957 * 80.34772 * 22 13 12 41 41 H 1.09004 * 109.47941 * 200.38205 * 22 13 12 42 42 H 1.08995 * 108.87423 * 31.42755 * 23 9 7 43 43 H 1.09001 * 108.87353 * 149.96168 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2304 6 8 1.2475 -1.1692 2.0256 7 6 3.4981 -0.8462 1.4665 8 8 4.2854 -0.2818 0.7353 9 7 3.9489 -1.5956 2.4920 10 6 5.4062 -1.7803 2.6895 11 6 5.8872 -0.9207 3.7825 12 6 5.1577 -1.2138 5.1043 13 7 3.8713 -0.5810 5.0495 14 6 3.7603 0.7289 5.4330 15 1 4.6157 1.3849 5.3678 16 6 2.5483 1.2135 5.9052 17 7 1.6091 0.3752 6.2892 18 14 2.2503 3.0553 5.9958 19 1 2.5791 3.5435 7.3591 20 1 0.8237 3.3411 5.6983 21 1 3.1111 3.7455 5.0019 22 6 2.6523 -1.3043 4.5950 23 6 3.0167 -2.2150 3.3921 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6766 -1.7488 -1.2493 31 1 1.6765 -0.2073 -2.1393 32 1 3.1299 -0.7208 -1.2496 33 1 5.9305 -1.5215 1.7697 34 1 5.6049 -2.8231 2.9367 35 1 5.7249 0.1225 3.5113 36 1 6.9550 -1.0890 3.9214 37 1 5.7313 -0.8109 5.9390 38 1 5.0342 -2.2898 5.2274 39 1 0.7622 0.7138 6.6196 40 1 2.2651 -1.9133 5.4119 41 1 1.8947 -0.5830 4.2884 42 1 2.1060 -2.4577 2.8445 43 1 3.4546 -3.1374 3.7735 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980853954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:29 Heat of formation + Delta-G solvation = -31.925720 kcal Electronic energy + Delta-G solvation = -24642.147088 eV Core-core repulsion = 21303.095476 eV Total energy + Delta-G solvation = -3339.051613 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.78315 -38.51574 -37.15467 -35.66147 -34.11780 -32.54801 -30.84488 -27.81656 -27.30471 -27.19306 -26.01841 -24.78484 -23.65378 -22.27907 -19.98818 -19.70799 -18.18135 -16.87521 -16.39613 -16.21792 -15.63563 -15.07015 -15.01487 -14.41527 -14.22414 -13.76448 -13.63027 -13.25902 -13.13688 -12.83441 -12.53242 -12.28002 -12.22014 -12.16486 -12.04285 -11.64212 -11.48644 -11.36695 -11.16301 -11.00658 -10.86821 -10.74839 -10.52898 -10.40271 -10.21502 -10.15888 -9.77391 -9.66149 -8.67484 -8.39902 -8.10452 -6.66296 -5.76305 -3.18273 1.41048 3.08377 3.37310 3.44383 3.45124 3.48123 4.33537 4.53059 4.72612 4.95705 4.98320 5.31898 5.40058 5.48677 5.52595 5.60942 5.67001 5.71357 5.77234 5.81078 5.91241 5.93223 5.99849 6.03352 6.12727 6.18463 6.20223 6.31124 6.41437 6.44517 6.48482 6.50909 6.81374 6.83468 7.05928 7.32827 7.43575 7.57308 7.82690 7.90848 8.39713 8.48352 9.23603 9.91886 10.37738 11.31442 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.008218 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.984041 B = 3406.522506 C = 4348.021384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.139 4.139 5 C 0.354 3.646 6 O -0.400 6.400 7 C 0.480 3.520 8 O -0.530 6.530 9 N -0.553 5.553 10 C 0.125 3.875 11 C -0.170 4.170 12 C 0.161 3.839 13 N -0.592 5.592 14 C -0.256 4.256 15 H 0.063 0.937 16 C 0.006 3.994 17 N -0.902 5.902 18 Si 0.894 3.106 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.171 3.829 23 C 0.056 3.944 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.253 0.747 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.276 -4.965 -12.215 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 C -0.201 4.201 4 C -0.197 4.197 5 C 0.224 3.776 6 O -0.268 6.268 7 C 0.265 3.735 8 O -0.409 6.409 9 N -0.285 5.285 10 C 0.004 3.996 11 C -0.211 4.211 12 C 0.033 3.967 13 N -0.314 5.314 14 C -0.386 4.386 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.547 5.547 18 Si 0.724 3.276 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.046 3.954 23 C -0.069 4.069 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.077 -4.932 -12.059 13.073 hybrid contribution -0.194 1.039 0.323 1.105 sum 0.883 -3.893 -11.736 12.396 Atomic orbital electron populations 1.21772 0.92488 1.02559 1.02430 1.20913 0.97112 0.97561 0.93894 1.21908 1.03623 0.92438 1.02158 1.21852 1.02911 0.99478 0.95412 1.24826 0.89202 0.76905 0.86690 1.90338 1.58900 1.34809 1.42783 1.20685 0.90517 0.80422 0.81837 1.90621 1.57067 1.45513 1.47652 1.47559 1.07573 1.47439 1.25887 1.20705 0.79746 0.99351 0.99846 1.21864 0.99037 1.01454 0.98769 1.20287 0.87739 0.95231 0.93492 1.43740 1.02686 1.10175 1.74812 1.19133 0.96965 0.85922 1.36588 0.91896 1.24973 0.98142 0.97480 0.98706 1.70024 1.06555 1.32629 1.45460 0.86399 0.77316 0.85994 0.77867 1.21420 1.21528 1.20469 1.21882 0.89074 0.94078 0.90363 1.22901 0.93328 0.96650 0.93971 0.91748 0.91872 0.92151 0.89839 0.91771 0.92346 0.92785 0.91514 0.90554 0.90265 0.91722 0.91230 0.92432 0.93581 0.94872 0.93688 0.94067 0.90279 0.88217 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 7.76 37.16 0.29 -1.43 16 2 C -0.09 -1.32 0.76 -155.66 -0.12 -1.44 16 3 C -0.14 -2.07 8.29 37.15 0.31 -1.76 16 4 C -0.14 -1.65 8.29 37.16 0.31 -1.35 16 5 C 0.35 6.23 5.89 -29.81 -0.18 6.05 16 6 O -0.40 -7.67 11.74 5.98 0.07 -7.60 16 7 C 0.48 9.10 7.37 -11.76 -0.09 9.01 16 8 O -0.53 -10.36 12.90 5.48 0.07 -10.29 16 9 N -0.55 -10.34 2.46 -177.09 -0.44 -10.77 16 10 C 0.12 2.07 5.68 -5.91 -0.03 2.04 16 11 C -0.17 -3.08 5.64 -29.13 -0.16 -3.24 16 12 C 0.16 3.32 5.63 -5.24 -0.03 3.29 16 13 N -0.59 -14.67 2.53 -171.79 -0.43 -15.10 16 14 C -0.26 -7.09 9.26 -15.06 -0.14 -7.23 16 15 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 16 C 0.01 0.16 4.89 -17.43 -0.09 0.07 16 17 N -0.90 -26.29 11.06 55.49 0.61 -25.67 16 18 Si 0.89 22.22 29.58 -169.99 -5.03 17.19 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.17 4.09 5.05 -1.57 -0.01 4.08 16 23 C 0.06 1.07 4.80 -4.39 -0.02 1.05 16 24 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.08 1.33 6.22 -51.93 -0.32 1.01 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.00 6.66 -51.93 -0.35 0.66 16 33 H 0.08 1.28 7.15 -51.93 -0.37 0.91 16 34 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.07 1.49 7.91 -51.93 -0.41 1.08 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.97 8.02 -51.93 -0.42 0.55 16 38 H 0.03 0.63 7.59 -51.93 -0.39 0.24 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.04 1.05 7.99 -51.93 -0.42 0.64 16 41 H 0.08 2.15 5.71 -51.93 -0.30 1.85 16 42 H 0.10 1.86 4.99 -52.66 -0.26 1.60 16 43 H 0.05 0.94 7.72 -51.93 -0.40 0.54 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -30.56 330.16 -7.11 -37.67 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.98 Total: 0.45 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 0.04 Total: 9.14 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.26 Total: -51.55 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.14 Total: -17.89 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.56 -7.11 -37.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980853954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.746 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds