Wall clock time and date at job start Tue Mar 31 2020 02:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46987 * 2 1 4 4 C 1.53005 * 109.46655 * 240.00459 * 2 1 3 5 5 C 1.50697 * 109.47143 * 120.00573 * 2 1 3 6 6 O 1.20778 * 119.99917 * 359.97438 * 5 2 1 7 7 C 1.49084 * 119.99696 * 180.02562 * 5 2 1 8 8 O 1.21370 * 120.00498 * 6.69994 * 7 5 2 9 9 N 1.34778 * 119.99980 * 186.69880 * 7 5 2 10 10 C 1.48212 * 119.97059 * 177.22670 * 9 7 5 11 11 C 1.47139 * 110.34238 * 102.51719 * 10 9 7 12 12 C 1.53796 * 111.84215 * 58.29298 * 11 10 9 13 13 N 1.43460 * 107.96200 * 281.66942 * 12 11 10 14 14 C 1.36942 * 118.94014 * 273.60842 * 13 12 11 15 15 H 1.07998 * 119.99410 * 25.87674 * 14 13 12 16 16 C 1.38803 * 120.00126 * 205.87099 * 14 13 12 17 17 N 1.31616 * 119.99985 * 16.34680 * 16 14 13 18 18 Si 1.86804 * 120.00128 * 196.34596 * 16 14 13 19 19 H 1.48494 * 109.46903 * 265.28402 * 18 16 14 20 20 H 1.48499 * 109.46827 * 145.28187 * 18 16 14 21 21 H 1.48500 * 109.46704 * 25.28529 * 18 16 14 22 22 C 1.48856 * 122.12028 * 93.88897 * 13 12 11 23 23 C 1.43624 * 119.96724 * 357.24993 * 9 7 5 24 24 H 1.09007 * 109.47083 * 299.99722 * 1 2 3 25 25 H 1.08995 * 109.47536 * 59.99638 * 1 2 3 26 26 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47114 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47767 * 300.00445 * 3 2 1 29 29 H 1.09001 * 109.47029 * 60.00657 * 3 2 1 30 30 H 1.08998 * 109.46869 * 299.99507 * 4 2 1 31 31 H 1.08998 * 109.47044 * 60.00201 * 4 2 1 32 32 H 1.09000 * 109.46591 * 179.97438 * 4 2 1 33 33 H 1.08995 * 109.32697 * 342.25020 * 10 9 7 34 34 H 1.09003 * 109.18570 * 222.69057 * 10 9 7 35 35 H 1.09002 * 109.00340 * 297.69106 * 11 10 9 36 36 H 1.08996 * 108.94683 * 178.86544 * 11 10 9 37 37 H 1.09001 * 109.76021 * 162.05264 * 12 11 10 38 38 H 1.09001 * 109.80808 * 41.31063 * 12 11 10 39 39 H 0.97006 * 120.00206 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.47957 * 80.34772 * 22 13 12 41 41 H 1.09004 * 109.47941 * 200.38205 * 22 13 12 42 42 H 1.08995 * 108.87423 * 31.42755 * 23 9 7 43 43 H 1.09001 * 108.87353 * 149.96168 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2304 6 8 1.2475 -1.1692 2.0256 7 6 3.4981 -0.8462 1.4665 8 8 4.2854 -0.2818 0.7353 9 7 3.9489 -1.5956 2.4920 10 6 5.4062 -1.7803 2.6895 11 6 5.8872 -0.9207 3.7825 12 6 5.1577 -1.2138 5.1043 13 7 3.8713 -0.5810 5.0495 14 6 3.7603 0.7289 5.4330 15 1 4.6157 1.3849 5.3678 16 6 2.5483 1.2135 5.9052 17 7 1.6091 0.3752 6.2892 18 14 2.2503 3.0553 5.9958 19 1 2.5791 3.5435 7.3591 20 1 0.8237 3.3411 5.6983 21 1 3.1111 3.7455 5.0019 22 6 2.6523 -1.3043 4.5950 23 6 3.0167 -2.2150 3.3921 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6766 -1.7488 -1.2493 31 1 1.6765 -0.2073 -2.1393 32 1 3.1299 -0.7208 -1.2496 33 1 5.9305 -1.5215 1.7697 34 1 5.6049 -2.8231 2.9367 35 1 5.7249 0.1225 3.5113 36 1 6.9550 -1.0890 3.9214 37 1 5.7313 -0.8109 5.9390 38 1 5.0342 -2.2898 5.2274 39 1 0.7622 0.7138 6.6196 40 1 2.2651 -1.9133 5.4119 41 1 1.8947 -0.5830 4.2884 42 1 2.1060 -2.4577 2.8445 43 1 3.4546 -3.1374 3.7735 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980853954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:28 Heat of formation + Delta-G solvation = -49.909769 kcal Electronic energy + Delta-G solvation = -24642.926935 eV Core-core repulsion = 21303.095476 eV Total energy + Delta-G solvation = -3339.831460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.19741 -39.96691 -38.74183 -36.97458 -35.80549 -34.19764 -32.77765 -29.49734 -28.44185 -28.24487 -27.59050 -26.29153 -25.53099 -23.72927 -21.66336 -21.18378 -19.60119 -18.64486 -17.98098 -17.75537 -17.15258 -16.60562 -16.39959 -16.18154 -15.75675 -15.39540 -15.01447 -14.73063 -14.63166 -14.26064 -14.20996 -13.76673 -13.65500 -13.29057 -13.15252 -13.06610 -13.01347 -12.83793 -12.61981 -12.52965 -12.44614 -12.35035 -12.13102 -11.95635 -11.76490 -11.74256 -11.56574 -11.45902 -10.56479 -10.01412 -9.64781 -8.68608 -7.89098 -5.32901 -0.00047 1.36723 1.39254 1.48031 1.70204 2.02282 2.46332 2.96034 3.24484 3.52076 3.71526 3.87073 3.89408 4.03330 4.17206 4.28543 4.30227 4.47119 4.53895 4.65324 4.72123 4.73171 4.81905 4.83167 4.88750 4.91156 4.92568 4.97942 5.03313 5.17332 5.19668 5.23567 5.31974 5.33862 5.45316 5.56755 5.68447 5.70672 5.96245 6.36931 6.37550 6.93402 7.14119 7.91833 8.31658 9.15279 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.008218 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.984041 B = 3406.522506 C = 4348.021384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.132 4.132 5 C 0.349 3.651 6 O -0.422 6.422 7 C 0.470 3.530 8 O -0.538 6.538 9 N -0.560 5.560 10 C 0.120 3.880 11 C -0.154 4.154 12 C 0.154 3.846 13 N -0.607 5.607 14 C -0.261 4.261 15 H 0.056 0.944 16 C -0.045 4.045 17 N -0.928 5.928 18 Si 0.949 3.051 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.277 1.277 22 C 0.182 3.818 23 C 0.072 3.928 24 H 0.041 0.959 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.030 0.970 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.248 0.752 40 H 0.016 0.984 41 H 0.039 0.961 42 H 0.106 0.894 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -5.621 -14.098 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C -0.198 4.198 4 C -0.189 4.189 5 C 0.220 3.780 6 O -0.293 6.293 7 C 0.256 3.744 8 O -0.417 6.417 9 N -0.291 5.291 10 C 0.000 4.000 11 C -0.195 4.195 12 C 0.027 3.973 13 N -0.329 5.329 14 C -0.392 4.392 15 H 0.074 0.926 16 C -0.241 4.241 17 N -0.574 5.574 18 Si 0.778 3.222 19 H -0.208 1.208 20 H -0.218 1.218 21 H -0.202 1.202 22 C 0.056 3.944 23 C -0.053 4.053 24 H 0.060 0.940 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.049 0.951 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.034 0.966 41 H 0.057 0.943 42 H 0.123 0.877 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.855 -5.596 -13.956 15.150 hybrid contribution -0.341 1.242 0.921 1.583 sum 1.515 -4.354 -13.035 13.826 Atomic orbital electron populations 1.21764 0.91201 1.02978 1.02850 1.21041 0.98088 0.97081 0.93251 1.21891 1.02372 0.92799 1.02732 1.21826 1.01951 1.00158 0.94985 1.25348 0.88508 0.76560 0.87570 1.90330 1.59087 1.36169 1.43701 1.21097 0.91279 0.80148 0.81899 1.90608 1.57482 1.45613 1.48025 1.47724 1.08472 1.47334 1.25586 1.20909 0.78500 1.01084 0.99523 1.21654 1.00974 0.99343 0.97530 1.20497 0.85964 0.96144 0.94650 1.43957 1.04253 1.09628 1.75089 1.19336 0.96719 0.87494 1.35625 0.92637 1.25609 0.98229 1.00912 0.99306 1.70163 1.06633 1.33888 1.46724 0.85532 0.76805 0.81960 0.77916 1.20797 1.21793 1.20234 1.21583 0.88112 0.93275 0.91427 1.22591 0.94299 0.96143 0.92284 0.93985 0.88732 0.91782 0.91682 0.88374 0.94560 0.91799 0.88641 0.91970 0.89566 0.88104 0.95144 0.88816 0.94381 0.92633 0.94270 0.96561 0.94252 0.87693 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 7.76 71.98 0.56 -2.56 16 2 C -0.09 -2.52 0.76 -52.93 -0.04 -2.56 16 3 C -0.14 -3.91 8.29 71.98 0.60 -3.31 16 4 C -0.13 -2.80 8.29 71.98 0.60 -2.20 16 5 C 0.35 12.22 5.89 28.60 0.17 12.39 16 6 O -0.42 -16.46 11.74 -1.50 -0.02 -16.48 16 7 C 0.47 17.56 7.37 87.16 0.64 18.21 16 8 O -0.54 -20.69 12.90 -3.31 -0.04 -20.74 16 9 N -0.56 -20.21 2.46 -832.55 -2.05 -22.26 16 10 C 0.12 3.66 5.68 84.23 0.48 4.14 16 11 C -0.15 -5.29 5.64 29.04 0.16 -5.13 16 12 C 0.15 6.19 5.63 87.21 0.49 6.68 16 13 N -0.61 -30.36 2.53 -697.41 -1.76 -32.12 16 14 C -0.26 -14.75 9.26 84.03 0.78 -13.97 16 15 H 0.06 3.15 7.88 -2.91 -0.02 3.13 16 16 C -0.04 -2.58 4.89 84.86 0.42 -2.17 16 17 N -0.93 -55.84 11.06 21.65 0.24 -55.60 16 18 Si 0.95 46.78 29.58 68.60 2.03 48.81 16 19 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 C 0.18 8.84 5.05 86.68 0.44 9.28 16 23 C 0.07 2.67 4.80 87.67 0.42 3.09 16 24 H 0.04 1.18 8.10 -2.38 -0.02 1.16 16 25 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 27 H 0.06 2.05 6.22 -2.39 -0.01 2.03 16 28 H 0.10 2.01 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.51 6.66 -2.39 -0.02 1.50 16 33 H 0.09 2.56 7.15 -2.39 -0.02 2.55 16 34 H 0.10 2.40 8.05 -2.39 -0.02 2.38 16 35 H 0.03 1.28 7.91 -2.39 -0.02 1.26 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.04 1.57 8.02 -2.39 -0.02 1.55 16 38 H 0.06 1.98 7.59 -2.39 -0.02 1.96 16 39 H 0.25 14.58 8.31 -92.70 -0.77 13.80 16 40 H 0.02 0.86 7.99 -2.39 -0.02 0.84 16 41 H 0.04 2.21 5.71 -2.38 -0.01 2.20 16 42 H 0.11 3.87 4.99 -13.95 -0.07 3.80 16 43 H 0.08 2.64 7.72 -2.39 -0.02 2.63 16 Total: -1.00 -68.50 330.16 5.03 -63.47 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.93 Total: 13.04 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 5.71 Total: 21.89 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.57 Total: -109.99 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.06 Total: -37.21 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -68.50 5.03 -63.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980853954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.557 kcal (2) G-P(sol) polarization free energy of solvation -68.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds