Wall clock time and date at job start Tue Mar 31 2020 01:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 110.46061 * 2 1 4 4 O 1.21288 * 120.00244 * 241.89019 * 3 2 1 5 5 N 1.34778 * 120.00185 * 61.88062 * 3 2 1 6 6 C 1.48208 * 119.96998 * 5.26391 * 5 3 2 7 7 C 1.47143 * 110.34703 * 102.48472 * 6 5 3 8 8 C 1.53796 * 111.84189 * 58.29294 * 7 6 5 9 9 N 1.43398 * 107.94750 * 281.65166 * 8 7 6 10 10 C 1.36937 * 118.94547 * 273.66164 * 9 8 7 11 11 H 1.08000 * 119.99963 * 137.53932 * 10 9 8 12 12 C 1.38808 * 120.00008 * 317.53503 * 10 9 8 13 13 N 1.31617 * 119.99979 * 159.13944 * 12 10 9 14 14 Si 1.86803 * 119.99903 * 339.13803 * 12 10 9 15 15 H 1.48500 * 109.47131 * 95.21964 * 14 12 10 16 16 H 1.48509 * 109.46995 * 215.21873 * 14 12 10 17 17 H 1.48497 * 109.47232 * 335.21305 * 14 12 10 18 18 C 1.48858 * 122.11324 * 93.65677 * 9 8 7 19 19 C 1.43621 * 119.97378 * 185.23392 * 5 3 2 20 20 C 1.54510 * 110.50829 * 237.39352 * 2 1 3 21 21 C 1.54798 * 103.91131 * 241.18654 * 20 2 1 22 22 O 1.44431 * 104.85712 * 336.11896 * 21 20 2 23 23 C 1.44425 * 105.27129 * 40.46198 * 22 21 20 24 24 H 1.09002 * 109.46940 * 74.30854 * 1 2 3 25 25 H 1.08992 * 109.47405 * 194.31241 * 1 2 3 26 26 H 1.09002 * 109.46904 * 314.31550 * 1 2 3 27 27 H 1.09005 * 109.32606 * 222.75423 * 6 5 3 28 28 H 1.09004 * 109.32750 * 342.21433 * 6 5 3 29 29 H 1.09003 * 109.00487 * 178.90775 * 7 6 5 30 30 H 1.08999 * 109.00411 * 297.68324 * 7 6 5 31 31 H 1.09005 * 109.76190 * 41.29075 * 8 7 6 32 32 H 1.08993 * 109.76149 * 162.00468 * 8 7 6 33 33 H 0.97006 * 120.00195 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.48160 * 200.61611 * 18 9 8 35 35 H 1.09005 * 109.47801 * 80.58487 * 18 9 8 36 36 H 1.08999 * 108.87039 * 149.88750 * 19 5 3 37 37 H 1.09002 * 108.87280 * 31.45648 * 19 5 3 38 38 H 1.08995 * 110.51159 * 359.86423 * 20 2 1 39 39 H 1.09003 * 110.51150 * 122.57789 * 20 2 1 40 40 H 1.09000 * 110.39249 * 217.25396 * 21 20 2 41 41 H 1.09002 * 110.40161 * 94.99471 * 21 20 2 42 42 H 1.09004 * 110.36810 * 200.65179 * 23 22 21 43 43 H 1.09003 * 110.46623 * 78.36802 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0568 1.4119 0.0000 4 8 2.7325 1.8071 -0.9265 5 7 1.7770 2.2356 1.0294 6 6 1.0513 1.7197 2.2143 7 6 1.9865 1.4885 3.3264 8 6 2.7409 2.7709 3.7157 9 7 3.7876 2.9761 2.7573 10 6 4.9961 2.3630 2.9543 11 1 5.5104 1.9035 2.1232 12 6 5.5602 2.3322 4.2222 13 7 6.4730 1.4302 4.5147 14 14 5.0238 3.5710 5.5135 15 1 3.9627 2.9727 6.3627 16 1 6.1872 3.9384 6.3603 17 1 4.4955 4.7866 4.8439 18 6 3.6026 3.8340 1.5550 19 6 2.1828 3.6123 0.9776 20 6 2.0713 -0.7798 -1.2191 21 6 2.8800 -1.9400 -0.5896 22 8 3.2417 -1.4678 0.7266 23 6 2.0713 -0.7796 1.2188 24 1 -0.3633 0.2779 -0.9894 25 1 -0.3634 -0.9957 0.2540 26 1 -0.3633 0.7180 0.7353 27 1 0.2987 2.4463 2.5209 28 1 0.5592 0.7820 1.9559 29 1 1.4283 1.1286 4.1907 30 1 2.7088 0.7277 3.0304 31 1 2.0567 3.6194 3.7023 32 1 3.1692 2.6586 4.7117 33 1 6.8670 1.4084 5.4008 34 1 4.3461 3.5708 0.8026 35 1 3.7223 4.8810 1.8337 36 1 1.4727 4.2109 1.5481 37 1 2.1681 3.9454 -0.0602 38 1 1.2490 -1.1674 -1.8204 39 1 2.7200 -0.1441 -1.8218 40 1 3.7743 -2.1431 -1.1787 41 1 2.2639 -2.8361 -0.5151 42 1 2.3442 -0.0914 2.0188 43 1 1.3287 -1.4952 1.5718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982824052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:45 Heat of formation + Delta-G solvation = -22.331211 kcal Electronic energy + Delta-G solvation = -24965.273140 eV Core-core repulsion = 21626.637577 eV Total energy + Delta-G solvation = -3338.635564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91717 -38.44422 -37.12128 -34.73410 -33.60733 -32.23522 -31.52276 -29.58648 -27.87916 -26.45885 -25.76699 -23.97878 -22.98109 -22.53392 -21.01570 -19.83398 -18.36160 -17.02262 -16.56959 -16.46098 -15.83567 -15.27955 -15.25505 -14.92799 -14.51403 -13.91907 -13.87466 -13.53541 -13.29609 -13.24827 -12.85403 -12.52604 -12.41432 -12.21849 -12.01975 -11.75721 -11.37491 -11.29568 -11.16262 -10.95589 -10.77059 -10.56891 -10.48867 -10.44036 -10.04160 -9.74916 -9.68429 -9.53014 -9.18652 -8.48180 -8.21675 -6.67492 -5.93478 -3.40113 2.94080 3.30342 3.36217 3.46965 3.52232 4.18799 4.40169 4.54529 4.56206 4.94909 4.99368 5.04201 5.10915 5.20123 5.27753 5.34321 5.41751 5.47768 5.53930 5.60389 5.70124 5.72758 5.78080 5.83040 5.90945 5.95618 5.99039 6.08171 6.11659 6.23947 6.27833 6.28606 6.56629 6.69378 6.78209 6.94319 6.99761 7.15353 7.74939 8.16958 8.49320 8.57048 9.10864 9.76783 10.15833 11.21797 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.007047 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.180723 B = 3972.469520 C = 4413.131247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.535 3.465 4 O -0.539 6.539 5 N -0.585 5.585 6 C 0.105 3.895 7 C -0.184 4.184 8 C 0.155 3.845 9 N -0.601 5.601 10 C -0.267 4.267 11 H 0.074 0.926 12 C 0.038 3.962 13 N -0.898 5.898 14 Si 0.879 3.121 15 H -0.287 1.287 16 H -0.302 1.302 17 H -0.271 1.271 18 C 0.128 3.872 19 C 0.103 3.897 20 C -0.141 4.141 21 C 0.043 3.957 22 O -0.358 6.358 23 C 0.028 3.972 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.262 0.738 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.129 0.871 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.058 -2.768 -6.699 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C 0.323 3.677 4 O -0.416 6.416 5 N -0.316 5.316 6 C -0.017 4.017 7 C -0.224 4.224 8 C 0.028 3.972 9 N -0.324 5.324 10 C -0.396 4.396 11 H 0.092 0.908 12 C -0.163 4.163 13 N -0.539 5.539 14 Si 0.709 3.291 15 H -0.215 1.215 16 H -0.230 1.230 17 H -0.196 1.196 18 C 0.002 3.998 19 C -0.022 4.022 20 C -0.179 4.179 21 C -0.034 4.034 22 O -0.275 6.275 23 C -0.049 4.049 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.376 -2.610 -6.973 17.084 hybrid contribution -0.394 0.614 0.885 1.147 sum -15.770 -1.996 -6.089 17.022 Atomic orbital electron populations 1.22101 0.91928 1.03002 1.03115 1.22089 0.97265 0.94237 0.98317 1.19999 0.79395 0.86451 0.81887 1.90623 1.38238 1.76082 1.36693 1.47263 1.56513 1.10335 1.17465 1.21195 0.94457 0.99962 0.86102 1.22115 0.99620 1.03477 0.97181 1.20599 0.89944 0.93054 0.93636 1.43855 1.10513 1.54272 1.23799 1.18785 0.96057 1.29073 0.95660 0.90811 1.25581 0.95817 0.97028 0.97845 1.69880 1.30090 1.32873 1.21045 0.86892 0.76656 0.83916 0.81605 1.21484 1.22976 1.19588 1.22140 0.94295 0.93358 0.89967 1.21608 0.97707 0.81565 1.01338 1.23104 1.00637 0.97254 0.96917 1.23467 0.99406 0.95614 0.84930 1.89293 1.34557 1.73363 1.30336 1.24431 0.88432 0.95421 0.96587 0.91722 0.91317 0.90833 0.91366 0.89612 0.91903 0.89022 0.94564 0.93037 0.92812 0.91837 0.95125 0.91885 0.90800 0.90420 0.88352 0.89169 0.92714 0.85396 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.94 37.16 0.29 -1.17 16 2 C -0.12 -1.65 0.69 -154.10 -0.11 -1.75 16 3 C 0.54 9.55 6.45 -10.99 -0.07 9.48 16 4 O -0.54 -11.43 14.89 5.55 0.08 -11.34 16 5 N -0.58 -9.69 2.44 -176.66 -0.43 -10.12 16 6 C 0.10 1.45 4.12 -5.91 -0.02 1.42 16 7 C -0.18 -3.16 5.19 -29.13 -0.15 -3.31 16 8 C 0.15 3.19 4.54 -5.27 -0.02 3.16 16 9 N -0.60 -14.15 2.04 -172.05 -0.35 -14.50 16 10 C -0.27 -7.58 9.51 -15.06 -0.14 -7.73 16 11 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 12 C 0.04 1.10 5.29 -17.43 -0.09 1.01 16 13 N -0.90 -27.78 13.97 55.49 0.78 -27.00 16 14 Si 0.88 22.18 25.17 -169.99 -4.28 17.90 16 15 H -0.29 -6.95 6.73 56.52 0.38 -6.57 16 16 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.13 2.64 6.85 -1.75 -0.01 2.63 16 19 C 0.10 1.73 5.21 -4.58 -0.02 1.70 16 20 C -0.14 -1.93 6.33 -24.99 -0.16 -2.08 16 21 C 0.04 0.60 7.64 38.10 0.29 0.89 16 22 O -0.36 -6.66 11.65 -35.23 -0.41 -7.07 16 23 C 0.03 0.43 5.51 37.93 0.21 0.64 16 24 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 25 H 0.07 0.56 7.78 -51.93 -0.40 0.16 16 26 H 0.07 0.70 5.30 -51.93 -0.28 0.42 16 27 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 28 H 0.09 0.99 3.35 -51.93 -0.17 0.82 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 1.90 5.11 -51.93 -0.27 1.63 16 31 H 0.04 0.66 7.59 -51.93 -0.39 0.26 16 32 H 0.05 1.18 3.52 -51.93 -0.18 1.00 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.06 1.45 7.97 -51.93 -0.41 1.04 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.90 7.73 -51.93 -0.40 0.50 16 37 H 0.07 1.22 7.45 -51.93 -0.39 0.83 16 38 H 0.08 0.82 7.71 -51.93 -0.40 0.42 16 39 H 0.10 1.58 6.51 -51.93 -0.34 1.24 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.13 2.27 2.60 -51.93 -0.14 2.13 16 43 H 0.06 0.78 7.63 -51.93 -0.40 0.38 16 LS Contribution 311.70 15.07 4.70 4.70 Total: -1.00 -34.26 311.70 -6.20 -40.46 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.28 Total: 2.07 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.01 Total: 4.90 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.01 Total: -51.62 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.33 Total: -18.41 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.28 Total: 17.90 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.26 -6.20 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982824052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.132 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds