Wall clock time and date at job start Tue Mar 31 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46976 * 2 1 4 4 C 1.52996 * 109.47247 * 119.99852 * 2 1 3 5 5 C 1.50705 * 109.46951 * 240.00225 * 2 1 3 6 6 O 1.20776 * 119.99847 * 359.97438 * 5 2 1 7 7 C 1.49093 * 119.99743 * 180.02562 * 5 2 1 8 8 O 1.21370 * 120.00056 * 8.46214 * 7 5 2 9 9 N 1.34769 * 120.00078 * 188.46497 * 7 5 2 10 10 C 1.46928 * 120.62791 * 8.51628 * 9 7 5 11 11 C 1.53625 * 108.54270 * 126.37188 * 10 9 7 12 12 C 1.53041 * 109.24023 * 54.85582 * 11 10 9 13 13 N 1.46507 * 109.45908 * 178.49279 * 12 11 10 14 14 C 1.36938 * 119.99792 * 275.06641 * 13 12 11 15 15 H 1.07994 * 120.00303 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99859 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00145 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00037 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47400 * 89.99310 * 18 16 14 20 20 H 1.48499 * 109.47050 * 209.99876 * 18 16 14 21 21 H 1.48499 * 109.46952 * 329.99796 * 18 16 14 22 22 C 1.53035 * 109.54045 * 298.51135 * 12 11 10 23 23 C 1.46921 * 120.63636 * 188.80279 * 9 7 5 24 24 H 1.09000 * 109.47121 * 60.00137 * 1 2 3 25 25 H 1.08996 * 109.47334 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47274 * 300.00517 * 1 2 3 27 27 H 1.08992 * 109.47338 * 60.00182 * 3 2 1 28 28 H 1.09007 * 109.47031 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47084 * 299.99885 * 3 2 1 30 30 H 1.09005 * 109.46906 * 59.99960 * 4 2 1 31 31 H 1.08997 * 109.46983 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47291 * 300.00445 * 4 2 1 33 33 H 1.08998 * 109.59172 * 246.20463 * 10 9 7 34 34 H 1.08997 * 109.58897 * 6.62962 * 10 9 7 35 35 H 1.09005 * 109.63449 * 294.86922 * 11 10 9 36 36 H 1.08997 * 109.46042 * 174.73973 * 11 10 9 37 37 H 1.08993 * 109.44957 * 58.52609 * 12 11 10 38 38 H 0.97001 * 120.00060 * 95.06664 * 13 12 11 39 39 H 0.96998 * 119.99765 * 180.02562 * 17 16 14 40 40 H 1.09008 * 109.49716 * 301.41610 * 22 12 11 41 41 H 1.08998 * 109.53024 * 181.33391 * 22 12 11 42 42 H 1.09004 * 109.58180 * 353.36860 * 23 9 7 43 43 H 1.08998 * 109.59017 * 113.64764 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0323 -0.7104 -1.2305 6 8 1.2474 -1.1697 -2.0253 7 6 3.4981 -0.8471 -1.4662 8 8 4.2847 -0.5259 -0.5994 9 7 3.9498 -1.3273 -2.6416 10 6 3.0282 -1.5449 -3.7651 11 6 3.5742 -0.8044 -4.9953 12 6 5.0100 -1.2615 -5.2630 13 7 5.5230 -0.5848 -6.4569 14 6 5.2654 -1.0993 -7.6995 15 1 4.6837 -2.0037 -7.7995 16 6 5.7511 -0.4579 -8.8307 17 7 5.5039 -0.9527 -10.0250 18 14 6.7567 1.1069 -8.6578 19 1 8.1958 0.7600 -8.5402 20 1 6.5498 1.9628 -9.8535 21 1 6.3238 1.8417 -7.4421 22 6 5.8907 -0.9125 -4.0612 23 6 5.3719 -1.6490 -2.8221 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6767 1.9564 0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 -1.7489 1.2492 31 1 3.1300 -0.7216 1.2489 32 1 1.6766 -0.2074 2.1392 33 1 2.9578 -2.6115 -3.9787 34 1 2.0427 -1.1555 -3.5100 35 1 3.5628 0.2699 -4.8111 36 1 2.9526 -1.0316 -5.8614 37 1 5.0239 -2.3396 -5.4225 38 1 6.0452 0.2278 -6.3671 39 1 5.8436 -0.5046 -10.8154 40 1 5.8575 0.1628 -3.8857 41 1 6.9180 -1.2168 -4.2617 42 1 5.9333 -1.3282 -1.9446 43 1 5.4890 -2.7242 -2.9578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990325411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:20 Heat of formation + Delta-G solvation = -49.884418 kcal Electronic energy + Delta-G solvation = -23173.699982 eV Core-core repulsion = 19833.869622 eV Total energy + Delta-G solvation = -3339.830360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.27095 -39.02630 -37.69548 -36.11513 -34.54642 -32.08197 -30.94145 -29.87848 -27.73492 -27.57638 -26.45063 -24.51250 -23.21097 -22.41017 -21.08187 -19.89533 -18.69695 -17.65413 -17.11165 -16.60195 -15.99032 -15.63096 -14.97234 -14.68201 -14.51362 -14.07667 -14.01200 -13.71821 -13.53424 -13.41925 -12.90316 -12.71963 -12.51165 -12.46051 -12.38541 -12.11719 -11.90202 -11.79362 -11.59460 -11.26524 -11.11498 -11.03385 -10.97151 -10.83211 -10.53567 -10.27394 -9.92941 -9.61823 -9.19257 -8.89655 -8.67927 -7.30854 -5.80247 -3.16260 0.82041 2.57159 2.85984 3.35313 3.38453 3.43329 3.80731 4.25959 4.55217 4.56249 4.57449 4.96727 5.02538 5.07901 5.22862 5.29185 5.32221 5.35102 5.46354 5.50340 5.54322 5.58701 5.59709 5.62364 5.66303 5.80065 5.83176 5.87639 5.98735 6.02138 6.09199 6.12097 6.19756 6.33791 6.41541 6.74417 6.84833 6.93653 7.26135 7.83698 7.95362 8.38808 9.16853 9.89572 10.09302 11.37988 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.003839 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.510043 B = 7292.116195 C = 7434.889975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.144 4.144 5 C 0.359 3.641 6 O -0.408 6.408 7 C 0.475 3.525 8 O -0.518 6.518 9 N -0.578 5.578 10 C 0.075 3.925 11 C -0.151 4.151 12 C 0.182 3.818 13 N -0.748 5.748 14 C -0.245 4.245 15 H 0.091 0.909 16 C 0.005 3.995 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.278 1.278 22 C -0.142 4.142 23 C 0.110 3.890 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.361 0.639 39 H 0.260 0.740 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.464 1.257 22.714 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.200 4.200 4 C -0.201 4.201 5 C 0.230 3.770 6 O -0.278 6.278 7 C 0.260 3.740 8 O -0.395 6.395 9 N -0.311 5.311 10 C -0.047 4.047 11 C -0.192 4.192 12 C 0.072 3.928 13 N -0.390 5.390 14 C -0.375 4.375 15 H 0.108 0.892 16 C -0.190 4.190 17 N -0.581 5.581 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.181 4.181 23 C -0.012 4.012 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.193 0.807 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.537 1.017 22.493 23.744 hybrid contribution 0.757 1.131 -0.270 1.387 sum -6.781 2.148 22.223 23.333 Atomic orbital electron populations 1.21792 0.92164 1.02848 1.02574 1.20959 0.97354 0.97332 0.93940 1.21885 1.02991 0.92522 1.02619 1.21931 1.03653 0.99564 0.94981 1.24997 0.88974 0.76321 0.86698 1.90232 1.58956 1.36450 1.42131 1.20780 0.90629 0.79484 0.83136 1.90677 1.56964 1.48063 1.43844 1.48339 1.10083 1.60783 1.11931 1.22880 0.94505 1.01578 0.85741 1.22730 1.00275 0.99807 0.96348 1.20176 0.90387 0.96619 0.85625 1.42798 1.64330 1.29617 1.02277 1.19071 1.28679 1.07996 0.81726 0.89150 1.24672 1.00611 0.98654 0.95112 1.69699 1.50273 1.41152 0.96957 0.86558 0.80717 0.84418 0.76861 1.21051 1.21733 1.20402 1.22235 1.00578 1.00661 0.94580 1.21761 0.80152 0.99825 0.99455 0.91870 0.91938 0.91506 0.91110 0.90498 0.92380 0.92634 0.89734 0.91348 0.91038 0.86407 0.92478 0.89992 0.92431 0.80658 0.93028 0.91841 0.90249 0.89020 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 7.76 37.16 0.29 -0.82 16 2 C -0.09 -0.89 0.76 -155.66 -0.12 -1.01 16 3 C -0.14 -1.26 8.29 37.16 0.31 -0.95 16 4 C -0.14 -1.22 8.29 37.16 0.31 -0.91 16 5 C 0.36 4.29 5.86 -29.80 -0.17 4.12 16 6 O -0.41 -5.33 12.84 5.99 0.08 -5.25 16 7 C 0.48 6.43 7.36 -11.76 -0.09 6.35 16 8 O -0.52 -7.54 12.91 5.48 0.07 -7.47 16 9 N -0.58 -8.01 2.97 -173.16 -0.51 -8.53 16 10 C 0.07 1.06 5.99 -3.48 -0.02 1.04 16 11 C -0.15 -2.56 5.67 -26.39 -0.15 -2.71 16 12 C 0.18 3.35 2.73 -67.89 -0.19 3.17 16 13 N -0.75 -17.32 4.93 -53.39 -0.26 -17.59 16 14 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 15 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 16 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 17 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 18 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 21 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 22 C -0.14 -2.16 5.55 -26.61 -0.15 -2.31 16 23 C 0.11 1.46 6.44 -3.71 -0.02 1.44 16 24 H 0.06 0.55 8.10 -51.93 -0.42 0.12 16 25 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.79 6.72 -51.93 -0.35 0.44 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.85 6.17 -51.93 -0.32 0.53 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.12 1.66 4.38 -54.45 -0.24 1.42 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 38 H 0.36 8.30 5.66 -40.82 -0.23 8.07 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.19 7.01 -51.93 -0.36 0.82 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -31.21 336.84 -6.75 -37.96 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.00 Total: 6.29 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.26 Total: 0.53 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.00 Total: -54.42 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.15 Total: -12.72 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.21 -6.75 -37.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990325411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.926 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds