Wall clock time and date at job start Tue Mar 31 2020 01:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 110.45673 * 2 1 4 4 O 1.21275 * 120.00019 * 122.35700 * 3 2 1 5 5 N 1.34775 * 119.99764 * 302.08142 * 3 2 1 6 6 C 1.46925 * 120.63250 * 174.76926 * 5 3 2 7 7 C 1.53621 * 108.54429 * 126.37129 * 6 5 3 8 8 C 1.53034 * 109.24304 * 54.85768 * 7 6 5 9 9 N 1.46504 * 109.46270 * 178.49388 * 8 7 6 10 10 C 1.36939 * 119.99818 * 275.07040 * 9 8 7 11 11 H 1.08004 * 120.00062 * 359.97438 * 10 9 8 12 12 C 1.38811 * 120.00098 * 179.97438 * 10 9 8 13 13 N 1.31622 * 119.99780 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99797 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47012 * 89.99571 * 14 12 10 16 16 H 1.48501 * 109.46476 * 209.99589 * 14 12 10 17 17 H 1.48497 * 109.47104 * 329.99317 * 14 12 10 18 18 C 1.53043 * 109.53807 * 298.51108 * 8 7 6 19 19 C 1.46934 * 120.63229 * 355.05478 * 5 3 2 20 20 C 1.54505 * 110.62784 * 122.68015 * 2 1 3 21 21 C 1.54484 * 104.06246 * 118.70644 * 20 2 1 22 22 O 1.44431 * 104.80049 * 336.01894 * 21 20 2 23 23 C 1.44420 * 105.27138 * 40.51321 * 22 21 20 24 24 H 1.09001 * 109.47253 * 64.38099 * 1 2 3 25 25 H 1.08999 * 109.47637 * 184.37827 * 1 2 3 26 26 H 1.09008 * 109.47403 * 304.37935 * 1 2 3 27 27 H 1.09006 * 109.58977 * 246.20388 * 6 5 3 28 28 H 1.09001 * 109.58591 * 6.62798 * 6 5 3 29 29 H 1.09001 * 109.63068 * 294.86566 * 7 6 5 30 30 H 1.09004 * 109.42969 * 174.72960 * 7 6 5 31 31 H 1.08996 * 109.45069 * 58.52522 * 8 7 6 32 32 H 0.96998 * 120.00406 * 95.06444 * 9 8 7 33 33 H 0.97000 * 119.99219 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.49686 * 301.41264 * 18 8 7 35 35 H 1.09000 * 109.52255 * 181.33197 * 18 8 7 36 36 H 1.09004 * 109.58106 * 353.36957 * 19 5 3 37 37 H 1.08997 * 109.58988 * 113.65270 * 19 5 3 38 38 H 1.08998 * 110.51373 * 237.34556 * 20 2 1 39 39 H 1.09001 * 110.51517 * 0.05815 * 20 2 1 40 40 H 1.09002 * 110.37227 * 217.19038 * 21 20 2 41 41 H 1.08998 * 110.46648 * 94.90074 * 21 20 2 42 42 H 1.09006 * 110.37541 * 200.64919 * 23 22 21 43 43 H 1.09002 * 110.37304 * 78.32127 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7952 1.7837 0.8872 5 7 1.7113 2.2600 -0.9890 6 6 2.1223 3.6699 -0.9438 7 6 2.8447 4.0105 -2.2560 8 6 1.9378 3.6582 -3.4372 9 7 2.6079 4.0145 -4.6904 10 6 2.5219 5.2931 -5.1732 11 1 1.9598 6.0387 -4.6305 12 6 3.1572 5.6309 -6.3603 13 7 3.0741 6.8597 -6.8246 14 14 4.1288 4.3411 -7.2995 15 1 3.2339 3.6522 -8.2637 16 1 5.2390 4.9970 -8.0360 17 1 4.6859 3.3490 -6.3453 18 6 1.6428 2.1565 -3.4260 19 6 0.9114 1.7936 -2.1298 20 6 2.0743 -0.7808 1.2171 21 6 2.8801 -1.9398 0.5897 22 8 2.3101 -2.1159 -0.7257 23 6 2.0712 -0.7797 -1.2187 24 1 -0.3634 0.4443 -0.9266 25 1 -0.3634 -1.0246 0.0784 26 1 -0.3634 0.5803 0.8482 27 1 1.2424 4.3037 -0.8328 28 1 2.7969 3.8271 -0.1022 29 1 3.7697 3.4379 -2.3241 30 1 3.0735 5.0760 -2.2780 31 1 1.0029 4.2125 -3.3550 32 1 3.1124 3.3449 -5.1781 33 1 3.5178 7.0955 -7.6543 34 1 2.5791 1.6014 -3.4831 35 1 1.0162 1.9020 -4.2808 36 1 0.7868 0.7123 -2.0709 37 1 -0.0661 2.2755 -2.1121 38 1 2.7243 -0.1456 1.8187 39 1 1.2534 -1.1689 1.8202 40 1 2.7603 -2.8484 1.1799 41 1 3.9344 -1.6737 0.5138 42 1 1.3301 -0.7968 -2.0179 43 1 3.0010 -0.3337 -1.5720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997120629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:32 Heat of formation + Delta-G solvation = -58.652525 kcal Electronic energy + Delta-G solvation = -23566.373575 eV Core-core repulsion = 20226.163001 eV Total energy + Delta-G solvation = -3340.210574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17980 -38.92628 -37.46848 -34.88606 -33.89700 -32.03341 -31.05090 -30.07362 -29.54487 -26.91610 -25.41976 -23.40123 -23.23483 -22.55219 -21.49624 -20.08677 -18.95983 -17.68901 -17.26381 -16.60194 -16.00835 -15.64665 -15.10926 -14.92812 -14.72687 -14.24811 -14.16502 -13.87261 -13.60542 -13.22678 -13.09711 -12.82180 -12.62859 -12.41816 -12.21669 -12.13055 -11.79982 -11.50798 -11.25709 -11.11511 -11.05272 -11.01630 -10.88124 -10.57068 -10.28109 -10.04047 -10.00058 -9.68304 -9.62947 -8.97223 -8.63170 -7.33214 -5.81816 -3.18039 2.49664 2.89240 3.34011 3.36762 3.42344 3.67074 4.03395 4.32255 4.43924 4.54732 4.62806 4.78665 4.90563 4.91372 4.97118 5.20569 5.22903 5.25647 5.29210 5.37789 5.43370 5.48335 5.49396 5.55168 5.64078 5.67118 5.73768 5.78493 5.79949 5.86388 6.05190 6.06774 6.17900 6.39819 6.42576 6.46902 6.77804 6.89575 7.36938 7.93491 8.07939 8.37159 9.15131 9.87779 10.07070 11.36407 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027433 B = 0.004230 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.419598 B = 6617.752441 C = 7043.237330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C 0.527 3.473 4 O -0.542 6.542 5 N -0.602 5.602 6 C 0.111 3.889 7 C -0.150 4.150 8 C 0.184 3.816 9 N -0.748 5.748 10 C -0.246 4.246 11 H 0.091 0.909 12 C 0.006 3.994 13 N -0.933 5.933 14 Si 0.884 3.116 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.278 1.278 18 C -0.146 4.146 19 C 0.096 3.904 20 C -0.142 4.142 21 C 0.044 3.956 22 O -0.371 6.371 23 C 0.057 3.943 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.361 0.639 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.729 -16.851 14.546 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C 0.314 3.686 4 O -0.420 6.420 5 N -0.334 5.334 6 C -0.011 4.011 7 C -0.191 4.191 8 C 0.074 3.926 9 N -0.390 5.390 10 C -0.375 4.375 11 H 0.108 0.892 12 C -0.190 4.190 13 N -0.580 5.580 14 Si 0.714 3.286 15 H -0.210 1.210 16 H -0.217 1.217 17 H -0.204 1.204 18 C -0.185 4.185 19 C -0.027 4.027 20 C -0.180 4.180 21 C -0.033 4.033 22 O -0.289 6.289 23 C -0.020 4.020 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.193 0.807 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.436 -16.576 14.835 22.900 hybrid contribution 0.846 -0.480 -0.763 1.236 sum -4.590 -17.056 14.073 22.583 Atomic orbital electron populations 1.22077 0.91318 1.03325 1.03466 1.22129 0.98400 0.93313 0.98083 1.20200 0.80251 0.86663 0.81469 1.90648 1.36427 1.77570 1.37334 1.48092 1.53174 1.10585 1.21556 1.21834 0.99700 0.79678 0.99875 1.22703 0.99620 1.02722 0.94006 1.20134 0.94768 0.91642 0.86032 1.42792 1.62079 1.10391 1.23750 1.19064 1.27623 0.86416 1.04444 0.89169 1.24672 1.00374 0.96057 0.97889 1.69702 1.48249 1.17300 1.22793 0.86560 0.80246 0.81569 0.80189 1.21041 1.21733 1.20400 1.22286 1.00891 0.98835 0.96441 1.22219 0.94604 1.00413 0.85454 1.23026 1.01089 0.96928 0.96940 1.23464 0.97173 0.98762 0.83859 1.89136 1.82969 1.25373 1.31430 1.23666 1.00667 0.82710 0.94995 0.90758 0.90938 0.91741 0.91442 0.89523 0.92371 0.90213 0.92451 0.80660 0.93013 0.91819 0.90182 0.89085 0.90789 0.88101 0.90057 0.88834 0.92026 0.87777 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 7.97 37.15 0.30 -0.87 16 2 C -0.12 -1.18 0.69 -154.10 -0.11 -1.29 16 3 C 0.53 7.01 6.40 -10.98 -0.07 6.94 16 4 O -0.54 -8.97 14.70 5.56 0.08 -8.89 16 5 N -0.60 -7.67 2.96 -172.50 -0.51 -8.18 16 6 C 0.11 1.57 6.47 -3.49 -0.02 1.55 16 7 C -0.15 -2.50 5.67 -26.39 -0.15 -2.65 16 8 C 0.18 3.23 2.73 -67.89 -0.19 3.05 16 9 N -0.75 -16.85 4.93 -53.38 -0.26 -17.12 16 10 C -0.25 -6.69 10.41 -15.06 -0.16 -6.85 16 11 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 12 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 13 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16 14 Si 0.88 21.74 27.74 -169.99 -4.71 17.03 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 17 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 18 C -0.15 -1.97 5.55 -26.61 -0.15 -2.12 16 19 C 0.10 1.03 4.54 -3.71 -0.02 1.01 16 20 C -0.14 -1.37 6.32 -25.16 -0.16 -1.53 16 21 C 0.04 0.41 7.63 37.94 0.29 0.70 16 22 O -0.37 -4.15 11.65 -35.23 -0.41 -4.56 16 23 C 0.06 0.58 5.53 37.93 0.21 0.79 16 24 H 0.07 0.54 5.10 -51.93 -0.26 0.27 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 32 H 0.36 8.07 5.66 -40.82 -0.23 7.84 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.79 2.48 -51.93 -0.13 0.66 16 37 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 38 H 0.10 1.14 6.50 -51.93 -0.34 0.80 16 39 H 0.08 0.65 7.74 -51.93 -0.40 0.25 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.88 6.18 -51.93 -0.32 0.56 16 43 H 0.07 0.75 7.86 -51.93 -0.41 0.34 16 LS Contribution 326.45 15.07 4.92 4.92 Total: -1.00 -32.53 326.45 -7.13 -39.66 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.69 Total: 6.39 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -0.31 Total: -1.19 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.00 Total: -53.37 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.33 Total: -13.44 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.53 -7.13 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997120629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.988 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds