Wall clock time and date at job start Tue Mar 31 2020 02:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46970 * 2 1 4 4 C 1.53004 * 109.46636 * 119.99657 * 2 1 3 5 5 C 1.50695 * 109.47150 * 239.99642 * 2 1 3 6 6 O 1.20778 * 120.00062 * 359.97438 * 5 2 1 7 7 C 1.49091 * 119.99663 * 180.02562 * 5 2 1 8 8 O 1.21365 * 120.00255 * 8.53957 * 7 5 2 9 9 N 1.34774 * 119.99686 * 188.53681 * 7 5 2 10 10 C 1.46931 * 120.63278 * 8.71799 * 9 7 5 11 11 C 1.53184 * 108.77523 * 126.36627 * 10 9 7 12 12 C 1.53042 * 109.31569 * 54.63648 * 11 10 9 13 13 C 1.53045 * 109.53704 * 298.63450 * 12 11 10 14 14 H 1.08994 * 109.49481 * 301.38231 * 13 12 11 15 15 N 1.46497 * 109.49854 * 181.31240 * 13 12 11 16 16 C 1.36934 * 120.00113 * 154.99766 * 15 13 12 17 17 H 1.08003 * 119.99739 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00273 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99949 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99998 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46804 * 90.00545 * 20 18 16 22 22 H 1.48501 * 109.47056 * 209.99705 * 20 18 16 23 23 H 1.48492 * 109.47498 * 330.00132 * 20 18 16 24 24 C 1.46923 * 120.63056 * 188.43578 * 9 7 5 25 25 H 1.09005 * 109.47014 * 60.00145 * 1 2 3 26 26 H 1.08993 * 109.47440 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47406 * 300.00534 * 1 2 3 28 28 H 1.08999 * 109.47492 * 59.99519 * 3 2 1 29 29 H 1.08999 * 109.46915 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47343 * 299.99328 * 3 2 1 31 31 H 1.08993 * 109.47072 * 59.99939 * 4 2 1 32 32 H 1.09000 * 109.46581 * 180.02562 * 4 2 1 33 33 H 1.09008 * 109.47045 * 299.99774 * 4 2 1 34 34 H 1.08996 * 109.58369 * 246.15372 * 10 9 7 35 35 H 1.08997 * 109.58184 * 6.57705 * 10 9 7 36 36 H 1.09005 * 109.49771 * 174.58719 * 11 10 9 37 37 H 1.08997 * 109.49977 * 294.68472 * 11 10 9 38 38 H 1.09004 * 109.45677 * 58.65037 * 12 11 10 39 39 H 1.08995 * 109.46477 * 178.62748 * 12 11 10 40 40 H 0.97002 * 120.00364 * 335.00415 * 15 13 12 41 41 H 0.96999 * 120.00196 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.58467 * 353.42288 * 24 9 7 43 43 H 1.09000 * 109.58684 * 113.84100 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 2.0323 -0.7105 -1.2304 6 8 1.2475 -1.1699 -2.0251 7 6 3.4982 -0.8471 -1.4659 8 8 4.2846 -0.5272 -0.5987 9 7 3.9499 -1.3261 -2.6419 10 6 3.0292 -1.5382 -3.7672 11 6 3.5728 -0.8006 -4.9948 12 6 5.0091 -1.2553 -5.2636 13 6 5.8898 -0.9068 -4.0615 14 1 5.8556 0.1682 -3.8850 15 7 7.2707 -1.3142 -4.3325 16 6 8.3072 -0.6888 -3.6924 17 1 8.1066 0.1044 -2.9875 18 6 9.6156 -1.0744 -3.9496 19 7 9.8600 -2.0408 -4.8091 20 14 11.0296 -0.2208 -3.0769 21 1 11.3313 -0.9334 -1.8094 22 1 12.2306 -0.2342 -3.9502 23 1 10.6510 1.1834 -2.7773 24 6 5.3733 -1.6404 -2.8251 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6765 -1.7488 1.2494 32 1 3.1299 -0.7208 1.2496 33 1 1.6765 -0.2072 2.1393 34 1 2.9564 -2.6039 -3.9838 35 1 2.0443 -1.1469 -3.5121 36 1 2.9510 -1.0280 -5.8607 37 1 3.5600 0.2734 -4.8091 38 1 5.0245 -2.3333 -5.4247 39 1 5.3899 -0.7500 -6.1511 40 1 7.4508 -2.0268 -4.9654 41 1 10.7744 -2.3100 -4.9891 42 1 5.9347 -1.3165 -1.9486 43 1 5.4956 -2.7146 -2.9633 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998756123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:21 Heat of formation + Delta-G solvation = -54.187095 kcal Electronic energy + Delta-G solvation = -23302.392145 eV Core-core repulsion = 19962.375206 eV Total energy + Delta-G solvation = -3340.016938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13831 -38.87805 -37.52316 -35.98907 -34.35693 -32.28499 -31.20322 -28.50828 -27.60601 -27.47682 -26.51839 -24.28244 -23.99922 -21.89036 -21.27725 -19.64220 -18.55367 -17.11472 -17.03504 -16.49541 -15.88403 -15.52830 -14.74751 -14.67942 -14.32669 -14.19478 -13.75241 -13.72908 -13.50692 -13.18579 -12.86276 -12.60819 -12.50013 -12.40203 -12.30892 -12.16725 -11.80733 -11.58022 -11.31572 -11.18627 -11.02898 -10.88851 -10.84116 -10.60892 -10.41506 -10.21880 -9.85245 -9.73118 -9.12632 -8.95607 -8.42371 -7.02746 -5.80489 -3.10594 0.93368 2.75856 3.03898 3.43879 3.49312 3.50783 3.94629 4.35564 4.56899 4.64044 4.65828 5.01949 5.09647 5.16362 5.30054 5.35659 5.43288 5.46087 5.57009 5.60239 5.61969 5.69247 5.71812 5.74947 5.79420 5.87721 5.93564 6.02446 6.09014 6.13611 6.15176 6.21716 6.32799 6.44264 6.57947 6.78176 6.88152 7.02246 7.49370 7.69767 8.07234 8.37486 9.49388 10.02952 10.38493 11.41731 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.004401 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.998681 B = 6360.113867 C = 7235.349876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.145 4.145 5 C 0.363 3.637 6 O -0.417 6.417 7 C 0.469 3.531 8 O -0.509 6.509 9 N -0.577 5.577 10 C 0.075 3.925 11 C -0.130 4.130 12 C -0.128 4.128 13 C 0.169 3.831 14 H 0.051 0.949 15 N -0.718 5.718 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.086 3.914 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.093 0.907 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.115 3.093 6.370 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 C -0.200 4.200 4 C -0.202 4.202 5 C 0.234 3.766 6 O -0.287 6.287 7 C 0.253 3.747 8 O -0.386 6.386 9 N -0.311 5.311 10 C -0.047 4.047 11 C -0.169 4.169 12 C -0.166 4.166 13 C 0.058 3.942 14 H 0.069 0.931 15 N -0.358 5.358 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.038 4.038 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.958 3.113 6.464 21.208 hybrid contribution 1.007 0.022 0.152 1.019 sum -18.950 3.134 6.617 20.316 Atomic orbital electron populations 1.21780 0.92322 1.02715 1.02418 1.20964 0.97188 0.97422 0.94129 1.21884 1.03260 0.92422 1.02448 1.21941 1.03931 0.99475 0.94890 1.25100 0.89214 0.75819 0.86481 1.90182 1.59125 1.36926 1.42505 1.20737 0.90296 0.80092 0.83552 1.90714 1.56818 1.47462 1.43616 1.48423 1.10585 1.60881 1.11220 1.22636 0.94789 1.01201 0.86033 1.21910 0.97222 1.00458 0.97319 1.21854 0.93915 1.01332 0.99494 1.20387 0.85681 0.97114 0.91028 0.93081 1.42384 0.98874 1.43513 1.51039 1.19278 0.85754 1.13808 1.18689 0.91000 1.24748 0.97354 0.98869 0.99614 1.69662 1.19426 1.31345 1.37544 0.86184 0.82139 0.79048 0.78811 1.21575 1.21747 1.20648 1.22877 0.77642 1.00420 1.02873 0.92021 0.92030 0.91563 0.91155 0.90288 0.92499 0.92674 0.89538 0.91380 0.91314 0.86390 0.90842 0.91803 0.92003 0.91358 0.78022 0.93428 0.88864 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 7.76 37.16 0.29 -0.86 16 2 C -0.10 -0.99 0.76 -155.66 -0.12 -1.11 16 3 C -0.14 -1.40 8.29 37.16 0.31 -1.09 16 4 C -0.15 -1.45 8.29 37.16 0.31 -1.14 16 5 C 0.36 4.65 5.86 -29.81 -0.17 4.48 16 6 O -0.42 -5.45 12.85 5.98 0.08 -5.38 16 7 C 0.47 7.38 7.36 -11.75 -0.09 7.30 16 8 O -0.51 -9.13 12.91 5.48 0.07 -9.06 16 9 N -0.58 -9.24 2.98 -173.69 -0.52 -9.76 16 10 C 0.08 1.01 5.96 -3.71 -0.02 0.98 16 11 C -0.13 -1.70 6.08 -26.61 -0.16 -1.87 16 12 C -0.13 -2.06 5.36 -26.69 -0.14 -2.21 16 13 C 0.17 3.38 2.91 -68.03 -0.20 3.18 16 14 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 15 N -0.72 -17.82 5.12 -53.53 -0.27 -18.09 16 16 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 17 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.09 1.63 6.00 -3.93 -0.02 1.60 16 25 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 26 H 0.06 0.54 8.10 -51.93 -0.42 0.11 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.94 6.73 -51.93 -0.35 0.59 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.05 6.17 -51.93 -0.32 0.73 16 33 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.12 1.50 4.39 -54.37 -0.24 1.27 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.39 10.08 7.80 -40.82 -0.32 9.76 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.09 2.00 7.00 -51.93 -0.36 1.64 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -30.42 339.92 -7.14 -37.56 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.05 Total: 7.35 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.27 Total: 1.97 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.07 Total: -55.06 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.15 Total: -14.44 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.42 -7.14 -37.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998756123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.629 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds