Wall clock time and date at job start Tue Mar 31 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47292 * 2 1 4 4 H 1.09002 * 110.33140 * 54.29792 * 3 2 1 5 5 C 1.54481 * 110.46871 * 176.61332 * 3 2 1 6 6 C 1.54506 * 104.06328 * 142.85832 * 5 3 2 7 7 C 1.54477 * 104.06393 * 359.97438 * 6 5 3 8 8 H 1.08998 * 110.37477 * 94.85232 * 7 6 5 9 9 C 1.50698 * 110.46533 * 217.14293 * 7 6 5 10 10 O 1.21290 * 120.00146 * 111.88968 * 9 7 6 11 11 N 1.34773 * 120.00275 * 291.88719 * 9 7 6 12 12 C 1.46503 * 120.00085 * 179.97438 * 11 9 7 13 13 H 1.08990 * 112.85079 * 334.66698 * 12 11 9 14 14 C 1.53780 * 113.61121 * 105.86864 * 12 11 9 15 15 C 1.54053 * 86.98511 * 89.16008 * 14 12 11 16 16 H 1.09003 * 113.69141 * 139.99282 * 15 14 12 17 17 N 1.46499 * 113.61260 * 270.88034 * 15 14 12 18 18 C 1.36944 * 120.00075 * 252.49458 * 17 15 14 19 19 H 1.08000 * 119.99836 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99499 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00669 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99454 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47141 * 90.00035 * 22 20 18 24 24 H 1.48503 * 109.47009 * 209.99967 * 22 20 18 25 25 H 1.48498 * 109.47023 * 329.99963 * 22 20 18 26 26 C 1.53777 * 87.07852 * 25.43026 * 15 14 12 27 27 O 1.44423 * 104.80156 * 336.01945 * 7 6 5 28 28 H 1.09004 * 109.47098 * 59.99769 * 1 2 3 29 29 H 1.08998 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47130 * 300.00013 * 1 2 3 31 31 H 1.09005 * 109.47600 * 240.00235 * 2 1 3 32 32 H 1.09004 * 109.47547 * 119.99943 * 2 1 3 33 33 H 1.08996 * 110.51209 * 261.50459 * 5 3 2 34 34 H 1.09006 * 110.50965 * 24.21172 * 5 3 2 35 35 H 1.09006 * 110.50783 * 241.35215 * 6 5 3 36 36 H 1.09001 * 110.62960 * 118.70518 * 6 5 3 37 37 H 0.97003 * 119.99608 * 0.02562 * 11 9 7 38 38 H 1.08996 * 113.61024 * 203.66397 * 14 12 11 39 39 H 1.09000 * 113.61568 * 334.56564 * 14 12 11 40 40 H 0.96997 * 120.00140 * 72.49060 * 17 15 14 41 41 H 0.96997 * 120.00162 * 180.02562 * 21 20 18 42 42 H 1.09002 * 113.61108 * 220.02023 * 26 15 14 43 43 H 1.08999 * 113.68871 * 89.13256 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6039 1.9984 0.8300 5 6 3.5822 1.4702 0.0855 6 6 3.9873 2.6534 -0.8218 7 6 2.6420 3.2002 -1.3486 8 1 2.2978 4.0257 -0.7256 9 6 2.7798 3.6475 -2.7811 10 8 2.2131 3.0384 -3.6638 11 7 3.5326 4.7242 -3.0815 12 6 3.6670 5.1586 -4.4742 13 1 3.5124 4.3487 -5.1870 14 6 2.8664 6.4298 -4.8029 15 6 4.1140 7.2274 -4.3778 16 1 4.3203 8.0889 -5.0129 17 7 4.1438 7.5531 -2.9498 18 6 3.9227 8.8397 -2.5363 19 1 3.7258 9.6142 -3.2628 20 6 3.9505 9.1482 -1.1831 21 7 4.1898 8.2043 -0.2977 22 14 3.6481 10.9031 -0.6189 23 1 2.1960 11.1033 -0.3809 24 1 4.3953 11.1541 0.6396 25 1 4.1126 11.8470 -1.6670 26 6 4.9381 5.9814 -4.7429 27 8 1.7287 2.0853 -1.2556 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9047 1.6477 1.1114 34 1 4.0024 0.5380 -0.2921 35 1 4.6079 2.3062 -1.6479 36 1 4.5113 3.4167 -0.2464 37 1 3.9861 5.2111 -2.3756 38 1 2.6228 6.5310 -5.8604 39 1 2.0054 6.5839 -4.1525 40 1 4.3202 6.8575 -2.2973 41 1 4.2089 8.4198 0.6479 42 1 5.7485 5.7739 -4.0441 43 1 5.2607 5.9593 -5.7838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022155822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:53 Heat of formation + Delta-G solvation = -55.547374 kcal Electronic energy + Delta-G solvation = -22934.641734 eV Core-core repulsion = 19594.565809 eV Total energy + Delta-G solvation = -3340.075925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28256 -39.14173 -37.51597 -33.68828 -33.66712 -32.79108 -31.84254 -29.99209 -28.57004 -25.13034 -24.94304 -24.13668 -22.53165 -21.77507 -21.03277 -20.08318 -18.94851 -17.47831 -16.88906 -16.52416 -16.08599 -15.48120 -14.92164 -14.53062 -14.36969 -14.06818 -13.69973 -13.67849 -13.52766 -13.19347 -13.09787 -12.93594 -12.08189 -12.02308 -11.82708 -11.73705 -11.51712 -11.48712 -11.03431 -10.93368 -10.85067 -10.79942 -10.68512 -10.25393 -10.18142 -9.91783 -9.84153 -9.61329 -9.28460 -8.97123 -8.54759 -7.11049 -5.91623 -3.19918 2.88311 3.18262 3.37180 3.43205 3.43882 4.08038 4.46288 4.49036 4.60185 4.87246 4.92245 5.02610 5.05741 5.16374 5.23303 5.26013 5.29033 5.40510 5.49751 5.53037 5.62764 5.73669 5.74483 5.82788 5.83418 5.92426 5.93424 5.98497 6.06649 6.12959 6.24067 6.24972 6.30549 6.55543 6.70364 6.81604 6.82221 7.13138 7.62050 7.90171 8.28396 8.57615 9.38921 9.93208 10.26629 11.31473 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.004531 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.459508 B = 6178.560748 C = 7228.519043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.069 3.931 4 H 0.071 0.929 5 C -0.148 4.148 6 C -0.144 4.144 7 C 0.058 3.942 8 H 0.099 0.901 9 C 0.523 3.477 10 O -0.534 6.534 11 N -0.697 5.697 12 C 0.125 3.875 13 H 0.090 0.910 14 C -0.187 4.187 15 C 0.164 3.836 16 H 0.067 0.933 17 N -0.704 5.704 18 C -0.242 4.242 19 H 0.074 0.926 20 C -0.011 4.011 21 N -0.936 5.936 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.167 4.167 27 O -0.341 6.341 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.408 0.592 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.378 0.622 41 H 0.257 0.743 42 H 0.071 0.929 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.221 -13.373 0.076 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C 0.011 3.989 4 H 0.089 0.911 5 C -0.185 4.185 6 C -0.182 4.182 7 C -0.004 4.004 8 H 0.117 0.883 9 C 0.308 3.692 10 O -0.410 6.410 11 N -0.352 5.352 12 C 0.019 3.981 13 H 0.108 0.892 14 C -0.229 4.229 15 C 0.052 3.948 16 H 0.085 0.915 17 N -0.345 5.345 18 C -0.373 4.373 19 H 0.092 0.908 20 C -0.207 4.207 21 N -0.584 5.584 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.207 4.207 27 O -0.259 6.259 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.246 0.754 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.213 0.787 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.806 -13.674 -0.651 13.713 hybrid contribution 0.182 1.086 1.137 1.583 sum -0.623 -12.588 0.486 12.613 Atomic orbital electron populations 1.21737 0.95260 1.01409 1.02508 1.21563 0.96824 0.94312 1.02555 1.23134 0.93982 0.94385 0.87399 0.91072 1.22976 0.95919 0.99049 1.00601 1.22895 0.96617 0.98587 1.00149 1.22840 0.90852 0.91935 0.94740 0.88316 1.20101 0.78812 0.80264 0.90007 1.90672 1.46041 1.55427 1.48898 1.45761 1.50498 1.29468 1.09475 1.21760 0.97572 0.96063 0.82668 0.89187 1.24334 1.00792 0.97172 1.00650 1.21262 0.92234 0.93848 0.87451 0.91514 1.42215 1.84149 1.08289 0.99807 1.19305 1.40750 0.85948 0.91312 0.90793 1.24728 1.02305 0.97855 0.95766 1.69609 1.56135 1.31665 1.00958 0.86145 0.77716 0.84077 0.77972 1.21651 1.21725 1.20673 1.23857 0.96701 0.98297 1.01804 1.89254 1.56134 1.42170 1.38324 0.91772 0.92882 0.92860 0.91050 0.90781 0.90146 0.90471 0.90358 0.88990 0.75392 0.90412 0.91068 0.78658 0.93353 0.91075 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.84 37.15 0.37 -1.18 16 2 C -0.12 -1.17 5.57 -26.73 -0.15 -1.32 16 3 C 0.07 0.82 3.26 -25.95 -0.08 0.74 16 4 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.15 -1.56 6.63 -25.16 -0.17 -1.72 16 6 C -0.14 -1.81 6.62 -25.17 -0.17 -1.97 16 7 C 0.06 0.90 3.70 -27.11 -0.10 0.80 16 8 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 9 C 0.52 9.57 7.08 -10.99 -0.08 9.50 16 10 O -0.53 -11.51 16.18 -13.64 -0.22 -11.73 16 11 N -0.70 -12.20 5.12 -53.02 -0.27 -12.47 16 12 C 0.12 2.12 4.30 -67.12 -0.29 1.83 16 13 H 0.09 1.53 7.50 -51.93 -0.39 1.14 16 14 C -0.19 -3.35 7.70 -25.78 -0.20 -3.55 16 15 C 0.16 3.13 4.57 -66.98 -0.31 2.82 16 16 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 17 N -0.70 -16.47 5.18 -52.50 -0.27 -16.75 16 18 C -0.24 -6.40 9.97 -15.06 -0.15 -6.55 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 21 N -0.94 -26.22 13.06 55.49 0.72 -25.50 16 22 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C -0.17 -2.63 7.58 -25.92 -0.20 -2.82 16 27 O -0.34 -5.51 10.32 -54.42 -0.56 -6.07 16 28 H 0.06 0.78 7.96 -51.93 -0.41 0.37 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.75 7.88 -51.93 -0.41 0.34 16 35 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.41 7.29 6.17 -40.82 -0.25 7.04 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.38 8.97 5.34 -40.82 -0.22 8.75 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -31.01 347.70 -9.13 -40.14 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -7.13 Total: 14.43 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.61 Total: -3.82 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.18 Total: -54.72 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.78 Total: -17.80 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.01 -9.13 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022155822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.408 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds