Wall clock time and date at job start Tue Mar 31 2020 02:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46902 * 2 1 4 4 H 1.09002 * 109.82416 * 54.43419 * 3 2 1 5 5 C 1.54388 * 109.90567 * 175.36627 * 3 2 1 6 6 C 1.55408 * 102.31061 * 140.83851 * 5 3 2 7 7 C 1.54947 * 100.89217 * 325.99477 * 6 5 3 8 8 H 1.08997 * 110.30606 * 277.35449 * 7 6 5 9 9 C 1.50706 * 110.30826 * 155.28830 * 7 6 5 10 10 O 1.21281 * 119.99699 * 246.38424 * 9 7 6 11 11 N 1.34773 * 120.00080 * 66.38915 * 9 7 6 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 7 13 13 H 1.08997 * 112.84605 * 25.05396 * 12 11 9 14 14 C 1.53782 * 113.61445 * 156.25077 * 12 11 9 15 15 C 1.53786 * 87.07801 * 139.98182 * 14 12 11 16 16 H 1.09000 * 113.61502 * 89.11592 * 15 14 12 17 17 N 1.46500 * 113.61178 * 219.93527 * 15 14 12 18 18 C 1.36934 * 120.00172 * 205.00072 * 17 15 14 19 19 H 1.08000 * 119.99712 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00217 * 180.02562 * 18 17 15 21 21 N 1.31626 * 120.00121 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00048 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46904 * 90.00318 * 22 20 18 24 24 H 1.48495 * 109.47277 * 210.00417 * 22 20 18 25 25 H 1.48498 * 109.47233 * 330.00894 * 22 20 18 26 26 C 1.53785 * 113.61303 * 253.85863 * 12 11 9 27 27 O 1.43234 * 109.83147 * 293.54415 * 3 2 1 28 28 H 1.09002 * 109.47332 * 60.00285 * 1 2 3 29 29 H 1.09007 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47657 * 300.00164 * 1 2 3 31 31 H 1.09004 * 109.47315 * 239.99821 * 2 1 3 32 32 H 1.09002 * 109.47332 * 119.99715 * 2 1 3 33 33 H 1.08992 * 110.84763 * 259.10398 * 5 3 2 34 34 H 1.08999 * 110.84341 * 22.51863 * 5 3 2 35 35 H 1.08992 * 111.21628 * 208.05950 * 6 5 3 36 36 H 1.09007 * 111.08246 * 83.86575 * 6 5 3 37 37 H 0.97005 * 120.00161 * 359.72088 * 11 9 7 38 38 H 1.08999 * 113.60954 * 254.52873 * 14 12 11 39 39 H 1.08995 * 113.61241 * 25.34519 * 14 12 11 40 40 H 0.97002 * 120.00419 * 24.99829 * 17 15 14 41 41 H 0.96989 * 120.00055 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.61375 * 334.56738 * 26 12 11 43 43 H 1.08994 * 113.61061 * 105.46533 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6008 1.9899 0.8341 5 6 3.5793 1.4559 0.1173 6 6 3.9749 2.6097 -0.8457 7 6 2.8861 2.4654 -1.9386 8 1 3.1689 1.6939 -2.6547 9 6 2.6752 3.7805 -2.6437 10 8 1.6205 4.3681 -2.5284 11 7 3.6586 4.3036 -3.4025 12 6 3.4537 5.5823 -4.0875 13 1 2.7067 6.2087 -3.6000 14 6 4.7614 6.3232 -4.4130 15 6 4.1217 6.6977 -5.7604 16 1 3.5567 7.6294 -5.7316 17 7 5.0518 6.6311 -6.8903 18 6 4.8248 7.3867 -8.0095 19 1 3.9598 8.0315 -8.0594 20 6 5.7059 7.3232 -9.0803 21 7 5.4879 8.0500 -10.1559 22 14 7.2016 6.2076 -8.9943 23 1 6.8496 4.8661 -9.5252 24 1 8.3002 6.7889 -9.8068 25 1 7.6438 6.0805 -7.5824 26 6 3.2448 5.4419 -5.6047 27 8 1.6944 2.0801 -1.2352 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8886 1.6786 1.1384 34 1 4.0019 0.5081 -0.2162 35 1 4.9708 2.4536 -1.2602 36 1 3.9060 3.5770 -0.3478 37 1 4.5036 3.8356 -3.4916 38 1 4.9503 7.1800 -3.7663 39 1 5.6248 5.6645 -4.5061 40 1 5.8285 6.0518 -6.8457 41 1 6.1037 8.0059 -10.9039 42 1 3.6926 4.5417 -6.0256 43 1 2.2113 5.5882 -5.9184 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022155823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:54 Heat of formation + Delta-G solvation = -57.867714 kcal Electronic energy + Delta-G solvation = -22085.465936 eV Core-core repulsion = 18745.289394 eV Total energy + Delta-G solvation = -3340.176542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59934 -39.28130 -37.78708 -34.24994 -33.87642 -32.96997 -32.22701 -30.53077 -28.95258 -25.26102 -25.21546 -24.06383 -22.36216 -21.96626 -21.12948 -20.34765 -19.52416 -17.92256 -17.44342 -16.88429 -16.18246 -16.01710 -14.91705 -14.86833 -14.59268 -14.45914 -14.11475 -13.72189 -13.49395 -13.38855 -13.18075 -12.72525 -12.40651 -12.21359 -12.18885 -12.07298 -11.83414 -11.78539 -11.34985 -11.23304 -11.10307 -11.03486 -10.79449 -10.46627 -10.32656 -10.19259 -10.07867 -9.63380 -9.42747 -8.97279 -8.83670 -7.31192 -5.81096 -3.17348 2.55166 2.85014 3.32520 3.35023 3.41362 3.67476 4.01818 4.26603 4.42225 4.54250 4.64650 4.70730 4.79715 4.85400 4.98109 5.02164 5.07624 5.11814 5.21086 5.27939 5.36143 5.39340 5.43153 5.52100 5.60022 5.62453 5.65430 5.74183 5.89444 5.99411 6.03653 6.07851 6.16705 6.34875 6.52903 6.60444 6.66703 6.93378 7.52897 7.95124 8.23195 8.38380 9.15479 9.87684 10.07002 11.37080 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034689 B = 0.002881 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.976310 B = 9716.056512 C = 9930.801437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.082 0.918 5 C -0.150 4.150 6 C -0.145 4.145 7 C 0.063 3.937 8 H 0.095 0.905 9 C 0.511 3.489 10 O -0.523 6.523 11 N -0.713 5.713 12 C 0.120 3.880 13 H 0.111 0.889 14 C -0.161 4.161 15 C 0.175 3.825 16 H 0.088 0.912 17 N -0.734 5.734 18 C -0.249 4.249 19 H 0.092 0.908 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.176 4.176 27 O -0.345 6.345 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.398 0.602 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.099 -16.270 23.353 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.100 0.900 5 C -0.187 4.187 6 C -0.183 4.183 7 C 0.002 3.998 8 H 0.112 0.888 9 C 0.296 3.704 10 O -0.398 6.398 11 N -0.365 5.365 12 C 0.015 3.985 13 H 0.129 0.871 14 C -0.201 4.201 15 C 0.063 3.937 16 H 0.106 0.894 17 N -0.374 5.374 18 C -0.379 4.379 19 H 0.110 0.890 20 C -0.191 4.191 21 N -0.579 5.579 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.219 4.219 27 O -0.263 6.263 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.232 0.768 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.178 -15.618 23.159 28.113 hybrid contribution 1.762 -1.165 -0.093 2.115 sum -1.415 -16.783 23.066 28.560 Atomic orbital electron populations 1.21715 0.95119 1.01404 1.02581 1.21905 0.97236 0.95493 1.02344 1.22888 0.94136 0.93665 0.87505 0.90032 1.23205 0.95353 0.99207 1.00970 1.23256 0.98861 1.00276 0.95924 1.22837 0.86619 0.94933 0.95446 0.88775 1.20412 0.84341 0.86552 0.79133 1.90719 1.25857 1.61442 1.61736 1.45967 1.17030 1.23833 1.49664 1.22489 0.99057 0.84121 0.92823 0.87105 1.23880 0.96459 0.99947 0.99791 1.21360 0.91011 0.95804 0.85525 0.89365 1.42696 1.27241 1.52012 1.15431 1.19149 1.08718 1.18521 0.91487 0.89012 1.24707 0.98685 0.99503 0.96238 1.69702 1.38625 1.43426 1.06160 0.86537 0.83794 0.80965 0.77126 1.21082 1.21687 1.20365 1.24332 1.01848 1.02051 0.93633 1.88578 1.27309 1.77661 1.32766 0.91749 0.92914 0.92853 0.91438 0.91036 0.89633 0.89994 0.88964 0.89684 0.76802 0.91108 0.90188 0.80498 0.92988 0.90298 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.82 37.15 0.36 -0.82 16 2 C -0.13 -0.94 5.51 -26.73 -0.15 -1.08 16 3 C 0.08 0.64 3.51 -26.00 -0.09 0.54 16 4 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.15 -0.89 6.55 -24.73 -0.16 -1.05 16 6 C -0.15 -1.02 6.57 -24.42 -0.16 -1.18 16 7 C 0.06 0.64 3.86 -26.85 -0.10 0.54 16 8 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 9 C 0.51 6.94 7.18 -10.98 -0.08 6.87 16 10 O -0.52 -9.57 16.16 -13.78 -0.22 -9.80 16 11 N -0.71 -8.47 5.36 -53.01 -0.28 -8.75 16 12 C 0.12 1.69 4.22 -67.11 -0.28 1.41 16 13 H 0.11 1.68 7.49 -51.93 -0.39 1.30 16 14 C -0.16 -2.30 7.58 -25.92 -0.20 -2.49 16 15 C 0.18 3.22 4.48 -67.03 -0.30 2.92 16 16 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 17 N -0.73 -16.82 5.21 -52.55 -0.27 -17.10 16 18 C -0.25 -6.92 10.45 -15.06 -0.16 -7.08 16 19 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 21 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 22 Si 0.89 21.63 27.74 -169.99 -4.71 16.91 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 26 C -0.18 -2.94 7.70 -25.83 -0.20 -3.14 16 27 O -0.34 -4.22 9.88 -54.57 -0.54 -4.76 16 28 H 0.06 0.63 7.88 -51.93 -0.41 0.22 16 29 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.40 7.85 -51.93 -0.41 -0.01 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.67 8.05 -51.92 -0.42 0.25 16 37 H 0.40 3.57 8.71 -40.82 -0.36 3.21 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 40 H 0.36 8.04 5.79 -40.82 -0.24 7.81 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -34.33 349.87 -8.90 -43.22 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -7.30 Total: 7.81 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.61 Total: -4.53 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.22 Total: -54.13 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.76 Total: -14.56 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.33 -8.90 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022155823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.643 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds