Wall clock time and date at job start Tue Mar 31 2020 02:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46902 * 2 1 4 4 H 1.09002 * 109.82416 * 54.43419 * 3 2 1 5 5 C 1.54388 * 109.90567 * 175.36627 * 3 2 1 6 6 C 1.55408 * 102.31061 * 140.83851 * 5 3 2 7 7 C 1.54947 * 100.89217 * 325.99477 * 6 5 3 8 8 H 1.08997 * 110.30606 * 277.35449 * 7 6 5 9 9 C 1.50706 * 110.30826 * 155.28830 * 7 6 5 10 10 O 1.21281 * 119.99699 * 246.38424 * 9 7 6 11 11 N 1.34773 * 120.00080 * 66.38915 * 9 7 6 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 7 13 13 H 1.08997 * 112.84605 * 25.05396 * 12 11 9 14 14 C 1.53782 * 113.61445 * 156.25077 * 12 11 9 15 15 C 1.53786 * 87.07801 * 139.98182 * 14 12 11 16 16 H 1.09000 * 113.61502 * 89.11592 * 15 14 12 17 17 N 1.46500 * 113.61178 * 219.93527 * 15 14 12 18 18 C 1.36934 * 120.00172 * 205.00072 * 17 15 14 19 19 H 1.08000 * 119.99712 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00217 * 180.02562 * 18 17 15 21 21 N 1.31626 * 120.00121 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00048 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46904 * 90.00318 * 22 20 18 24 24 H 1.48495 * 109.47277 * 210.00417 * 22 20 18 25 25 H 1.48498 * 109.47233 * 330.00894 * 22 20 18 26 26 C 1.53785 * 113.61303 * 253.85863 * 12 11 9 27 27 O 1.43234 * 109.83147 * 293.54415 * 3 2 1 28 28 H 1.09002 * 109.47332 * 60.00285 * 1 2 3 29 29 H 1.09007 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47657 * 300.00164 * 1 2 3 31 31 H 1.09004 * 109.47315 * 239.99821 * 2 1 3 32 32 H 1.09002 * 109.47332 * 119.99715 * 2 1 3 33 33 H 1.08992 * 110.84763 * 259.10398 * 5 3 2 34 34 H 1.08999 * 110.84341 * 22.51863 * 5 3 2 35 35 H 1.08992 * 111.21628 * 208.05950 * 6 5 3 36 36 H 1.09007 * 111.08246 * 83.86575 * 6 5 3 37 37 H 0.97005 * 120.00161 * 359.72088 * 11 9 7 38 38 H 1.08999 * 113.60954 * 254.52873 * 14 12 11 39 39 H 1.08995 * 113.61241 * 25.34519 * 14 12 11 40 40 H 0.97002 * 120.00419 * 24.99829 * 17 15 14 41 41 H 0.96989 * 120.00055 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.61375 * 334.56738 * 26 12 11 43 43 H 1.08994 * 113.61061 * 105.46533 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6008 1.9899 0.8341 5 6 3.5793 1.4559 0.1173 6 6 3.9749 2.6097 -0.8457 7 6 2.8861 2.4654 -1.9386 8 1 3.1689 1.6939 -2.6547 9 6 2.6752 3.7805 -2.6437 10 8 1.6205 4.3681 -2.5284 11 7 3.6586 4.3036 -3.4025 12 6 3.4537 5.5823 -4.0875 13 1 2.7067 6.2087 -3.6000 14 6 4.7614 6.3232 -4.4130 15 6 4.1217 6.6977 -5.7604 16 1 3.5567 7.6294 -5.7316 17 7 5.0518 6.6311 -6.8903 18 6 4.8248 7.3867 -8.0095 19 1 3.9598 8.0315 -8.0594 20 6 5.7059 7.3232 -9.0803 21 7 5.4879 8.0500 -10.1559 22 14 7.2016 6.2076 -8.9943 23 1 6.8496 4.8661 -9.5252 24 1 8.3002 6.7889 -9.8068 25 1 7.6438 6.0805 -7.5824 26 6 3.2448 5.4419 -5.6047 27 8 1.6944 2.0801 -1.2352 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8886 1.6786 1.1384 34 1 4.0019 0.5081 -0.2162 35 1 4.9708 2.4536 -1.2602 36 1 3.9060 3.5770 -0.3478 37 1 4.5036 3.8356 -3.4916 38 1 4.9503 7.1800 -3.7663 39 1 5.6248 5.6645 -4.5061 40 1 5.8285 6.0518 -6.8457 41 1 6.1037 8.0059 -10.9039 42 1 3.6926 4.5417 -6.0256 43 1 2.2113 5.5882 -5.9184 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022155823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:54 Heat of formation + Delta-G solvation = -82.064054 kcal Electronic energy + Delta-G solvation = -22086.515168 eV Core-core repulsion = 18745.289394 eV Total energy + Delta-G solvation = -3341.225774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51140 -40.32458 -39.01118 -35.87942 -34.61464 -34.29089 -33.08260 -32.36379 -29.71136 -26.59143 -26.49724 -25.31173 -23.49725 -22.78278 -21.98219 -21.38481 -20.90203 -19.48641 -18.65758 -17.84469 -17.30263 -16.81250 -16.44368 -16.16550 -15.70635 -15.53784 -15.09130 -14.83852 -14.70325 -14.43370 -14.04473 -13.89356 -13.74750 -13.59864 -13.33281 -13.05474 -12.88529 -12.77338 -12.41482 -12.34636 -12.03258 -11.91237 -11.87278 -11.80601 -11.78923 -11.67501 -11.58607 -10.97666 -10.90380 -10.37342 -10.03486 -9.28370 -8.01819 -5.36190 1.38530 1.44108 1.51363 1.53088 1.92723 2.49987 2.95534 3.27616 3.42756 3.60432 3.63201 3.76654 3.78340 3.82272 4.02712 4.08394 4.13894 4.22699 4.25080 4.34257 4.46215 4.54757 4.71153 4.83220 4.84258 4.86627 4.88858 4.96014 4.98447 5.07507 5.09554 5.13545 5.14050 5.30563 5.33647 5.41485 5.61713 5.77648 6.00849 6.22626 6.57887 7.08093 7.23921 7.83267 8.04249 9.19803 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034689 B = 0.002881 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.976310 B = 9716.056512 C = 9930.801437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C 0.065 3.935 4 H 0.073 0.927 5 C -0.140 4.140 6 C -0.139 4.139 7 C 0.062 3.938 8 H 0.117 0.883 9 C 0.507 3.493 10 O -0.579 6.579 11 N -0.697 5.697 12 C 0.134 3.866 13 H 0.099 0.901 14 C -0.134 4.134 15 C 0.152 3.848 16 H 0.073 0.927 17 N -0.736 5.736 18 C -0.237 4.237 19 H 0.053 0.947 20 C -0.069 4.069 21 N -0.987 5.987 22 Si 0.961 3.039 23 H -0.279 1.279 24 H -0.298 1.298 25 H -0.242 1.242 26 C -0.173 4.173 27 O -0.383 6.383 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.073 0.927 37 H 0.417 0.583 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.370 0.630 41 H 0.258 0.742 42 H 0.083 0.917 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -19.044 25.918 32.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.008 3.992 4 H 0.091 0.909 5 C -0.177 4.177 6 C -0.176 4.176 7 C 0.001 3.999 8 H 0.134 0.866 9 C 0.294 3.706 10 O -0.458 6.458 11 N -0.349 5.349 12 C 0.029 3.971 13 H 0.117 0.883 14 C -0.174 4.174 15 C 0.042 3.958 16 H 0.091 0.909 17 N -0.377 5.377 18 C -0.368 4.368 19 H 0.071 0.929 20 C -0.260 4.260 21 N -0.637 5.637 22 Si 0.788 3.212 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.166 1.166 26 C -0.215 4.215 27 O -0.302 6.302 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.255 0.745 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.204 0.796 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.448 -18.435 25.801 31.713 hybrid contribution 0.742 -0.253 -0.862 1.165 sum 0.295 -18.688 24.939 31.166 Atomic orbital electron populations 1.21725 0.96267 1.01735 1.01273 1.21905 0.96235 0.94923 1.03481 1.23105 0.96302 0.93904 0.85913 0.90855 1.23211 0.93049 0.99661 1.01783 1.23299 0.99129 1.00274 0.94942 1.22994 0.87257 0.93086 0.96571 0.86562 1.21170 0.83451 0.87395 0.78577 1.90696 1.28168 1.63233 1.63729 1.45757 1.17673 1.22910 1.48605 1.22106 0.98842 0.85116 0.91085 0.88331 1.23672 0.96671 1.00687 0.96332 1.21643 0.91534 0.96053 0.86530 0.90878 1.42606 1.28368 1.51630 1.15142 1.19096 1.07026 1.17574 0.93143 0.92926 1.25624 1.02722 1.01882 0.95805 1.69908 1.40319 1.46134 1.07312 0.85317 0.78805 0.78254 0.78827 1.20539 1.22518 1.16636 1.24228 1.00379 1.01062 0.95860 1.88553 1.29082 1.78234 1.34336 0.94452 0.91746 0.92772 0.91361 0.88625 0.87946 0.88082 0.85848 0.90782 0.74512 0.89472 0.87940 0.79617 0.93362 0.89881 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.82 71.98 0.71 -1.60 16 2 C -0.13 -1.55 5.51 30.59 0.17 -1.38 16 3 C 0.06 0.97 3.51 31.07 0.11 1.08 16 4 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 5 C -0.14 -1.14 6.55 31.89 0.21 -0.93 16 6 C -0.14 -1.45 6.57 32.09 0.21 -1.24 16 7 C 0.06 1.12 3.86 30.52 0.12 1.24 16 8 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 9 C 0.51 13.13 7.18 87.66 0.63 13.76 16 10 O -0.58 -21.52 16.16 15.46 0.25 -21.27 16 11 N -0.70 -14.73 5.36 -440.02 -2.36 -17.08 16 12 C 0.13 3.57 4.22 45.52 0.19 3.77 16 13 H 0.10 2.96 7.49 -2.39 -0.02 2.94 16 14 C -0.13 -3.41 7.58 31.12 0.24 -3.18 16 15 C 0.15 5.49 4.48 45.58 0.20 5.70 16 16 H 0.07 2.83 8.10 -2.39 -0.02 2.81 16 17 N -0.74 -32.88 5.21 -320.16 -1.67 -34.55 16 18 C -0.24 -13.43 10.45 84.03 0.88 -12.55 16 19 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 21 N -0.99 -63.40 13.97 21.65 0.30 -63.10 16 22 Si 0.96 44.07 27.74 68.60 1.90 45.97 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.24 -9.59 6.52 99.48 0.65 -8.95 16 26 C -0.17 -5.66 7.70 31.18 0.24 -5.42 16 27 O -0.38 -9.10 9.88 -130.49 -1.29 -10.39 16 28 H 0.04 0.75 7.88 -2.39 -0.02 0.73 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.10 0.48 7.85 -2.39 -0.02 0.46 16 35 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.96 8.05 -2.38 -0.02 0.94 16 37 H 0.42 5.70 8.71 -92.70 -0.81 4.89 16 38 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.10 2.22 8.09 -2.39 -0.02 2.20 16 40 H 0.37 15.28 5.79 -92.71 -0.54 14.74 16 41 H 0.26 15.74 8.31 -92.72 -0.77 14.97 16 42 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -78.87 349.87 1.10 -77.76 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -0.40 Total: 27.00 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 4.37 Total: -4.33 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -3.72 Total: -114.74 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.04 Total: -31.66 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.90 Total: 45.97 kcal Total: -78.87 1.10 -77.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022155823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.301 kcal (2) G-P(sol) polarization free energy of solvation -78.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds