Wall clock time and date at job start Tue Mar 31 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46862 * 2 1 4 4 H 1.08998 * 110.55158 * 56.42420 * 3 2 1 5 5 O 1.44380 * 110.62005 * 293.54583 * 3 2 1 6 6 C 1.43739 * 106.97820 * 201.28312 * 5 3 2 7 7 C 1.54106 * 107.29313 * 26.50894 * 6 5 3 8 8 C 1.54807 * 104.18688 * 357.97161 * 7 6 5 9 9 H 1.09005 * 110.90346 * 97.31858 * 8 7 6 10 10 C 1.50703 * 110.90909 * 220.91968 * 8 7 6 11 11 O 1.21272 * 119.99956 * 118.54717 * 10 8 7 12 12 N 1.34776 * 119.99878 * 298.54688 * 10 8 7 13 13 C 1.46500 * 120.00117 * 179.97438 * 12 10 8 14 14 H 1.09003 * 112.84499 * 23.81103 * 13 12 10 15 15 C 1.53779 * 113.61613 * 155.00053 * 13 12 10 16 16 C 1.53775 * 87.08125 * 139.98644 * 15 13 12 17 17 H 1.08996 * 113.61879 * 89.20280 * 16 15 13 18 18 N 1.46505 * 113.61360 * 220.02164 * 16 15 13 19 19 C 1.36936 * 119.99925 * 204.99703 * 18 16 15 20 20 H 1.08003 * 120.00120 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99843 * 179.97438 * 19 18 16 22 22 N 1.31612 * 120.00108 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99611 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46965 * 90.00062 * 23 21 19 25 25 H 1.48497 * 109.46797 * 209.99957 * 23 21 19 26 26 H 1.48494 * 109.47388 * 329.99891 * 23 21 19 27 27 C 1.53775 * 113.61592 * 252.50319 * 13 12 10 28 28 H 1.08995 * 109.47065 * 60.00672 * 1 2 3 29 29 H 1.09006 * 109.46562 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47550 * 299.99878 * 1 2 3 31 31 H 1.08997 * 109.47308 * 239.99626 * 2 1 3 32 32 H 1.09000 * 109.46735 * 119.99660 * 2 1 3 33 33 H 1.09004 * 109.87903 * 267.08704 * 6 5 3 34 34 H 1.08997 * 110.00609 * 146.00467 * 6 5 3 35 35 H 1.08997 * 110.48714 * 116.64823 * 7 6 5 36 36 H 1.09000 * 110.48945 * 239.29694 * 7 6 5 37 37 H 0.97003 * 119.99886 * 0.02562 * 12 10 8 38 38 H 1.09001 * 113.61761 * 254.53744 * 15 13 12 39 39 H 1.09003 * 113.61234 * 25.43366 * 15 13 12 40 40 H 0.96999 * 119.99932 * 25.00006 * 18 16 15 41 41 H 0.97001 * 120.00270 * 179.97438 * 22 21 19 42 42 H 1.09001 * 113.61533 * 334.56054 * 27 13 12 43 43 H 1.09003 * 113.61699 * 105.46989 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6353 1.9914 0.8503 5 8 1.7005 2.1018 -1.2388 6 6 2.6026 3.2113 -1.3847 7 6 3.8890 2.8604 -0.6122 8 6 3.5894 1.4773 0.0153 9 1 4.0026 0.6750 -0.5961 10 6 4.1152 1.4013 1.4256 11 8 3.3503 1.2189 2.3489 12 7 5.4354 1.5361 1.6608 13 6 5.9465 1.4628 3.0318 14 1 5.2876 0.9081 3.7000 15 6 7.4190 1.0278 3.1179 16 6 7.5817 2.0758 4.2314 17 1 7.3715 1.6896 5.2287 18 7 8.8449 2.8145 4.1620 19 6 9.3716 3.3781 5.2935 20 1 8.8555 3.2783 6.2369 21 6 10.5688 4.0775 5.2278 22 7 11.1975 4.1995 4.0780 23 14 11.2876 4.8457 6.7715 24 1 12.1826 3.8676 7.4404 25 1 12.0639 6.0576 6.4058 26 1 10.1876 5.2224 7.6952 27 6 6.3965 2.8211 3.5949 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1531 4.1120 -0.9664 34 1 2.8339 3.3677 -2.4383 35 1 4.7372 2.7945 -1.2936 36 1 4.0802 3.5991 0.1661 37 1 6.0471 1.6823 0.9223 38 1 7.5519 0.0018 3.4612 39 1 7.9938 1.2523 2.2195 40 1 9.3082 2.9044 3.3146 41 1 12.0339 4.6886 4.0320 42 1 6.6919 3.5359 2.8269 43 1 5.7040 3.2429 4.3234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022463467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:49 Heat of formation + Delta-G solvation = -64.870116 kcal Electronic energy + Delta-G solvation = -22268.738281 eV Core-core repulsion = 18928.258092 eV Total energy + Delta-G solvation = -3340.480189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.66053 -39.13365 -37.75527 -34.22785 -33.71700 -33.09956 -32.07717 -29.87955 -28.63941 -25.17661 -25.07360 -24.00142 -22.86914 -21.78986 -21.15903 -20.26057 -19.29710 -17.62449 -17.13307 -16.51033 -16.29544 -15.68011 -15.30929 -14.82963 -14.58787 -14.38033 -13.83466 -13.76163 -13.55870 -13.31221 -13.06847 -12.87277 -12.58471 -12.08369 -11.96632 -11.88287 -11.69100 -11.30299 -11.12394 -11.03441 -10.97043 -10.91241 -10.66440 -10.52166 -10.37769 -10.09013 -9.94421 -9.74936 -9.57998 -8.95258 -8.80963 -7.02757 -5.83992 -3.12964 2.55958 3.13846 3.39994 3.45703 3.47057 3.59266 4.20825 4.32933 4.51707 4.55755 4.73353 4.89973 4.93817 4.98320 5.04189 5.14100 5.18940 5.26028 5.32872 5.43428 5.45735 5.47855 5.57986 5.67928 5.73123 5.81934 5.82635 5.90417 5.97799 6.07293 6.14021 6.20549 6.25790 6.45017 6.56010 6.64911 6.69770 7.00951 7.55296 7.65369 8.20494 8.34497 9.45965 10.02193 10.36751 11.38417 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035862 B = 0.002914 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.580504 B = 9606.634326 C = 9977.286184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.098 3.902 4 H 0.083 0.917 5 O -0.373 6.373 6 C 0.049 3.951 7 C -0.149 4.149 8 C -0.144 4.144 9 H 0.111 0.889 10 C 0.523 3.477 11 O -0.541 6.541 12 N -0.711 5.711 13 C 0.116 3.884 14 H 0.109 0.891 15 C -0.159 4.159 16 C 0.169 3.831 17 H 0.080 0.920 18 N -0.710 5.710 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.176 4.176 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.400 0.600 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.079 0.921 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.775 -6.645 -12.083 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.041 3.959 4 H 0.101 0.899 5 O -0.292 6.292 6 C -0.028 4.028 7 C -0.187 4.187 8 C -0.166 4.166 9 H 0.129 0.871 10 C 0.309 3.691 11 O -0.418 6.418 12 N -0.360 5.360 13 C 0.012 3.988 14 H 0.127 0.873 15 C -0.199 4.199 16 C 0.056 3.944 17 H 0.098 0.902 18 N -0.348 5.348 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.218 4.218 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.234 0.766 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.401 -6.756 -11.365 21.854 hybrid contribution 1.231 0.752 0.210 1.458 sum -16.169 -6.004 -11.156 20.541 Atomic orbital electron populations 1.21691 0.95102 1.01508 1.02231 1.21542 0.96950 0.93942 1.02787 1.22995 0.90544 0.94846 0.87548 0.89882 1.88877 1.56149 1.43536 1.40629 1.23105 0.88700 0.90146 1.00833 1.22957 0.99526 0.95631 1.00543 1.22965 0.98552 1.00054 0.95040 0.87089 1.20180 0.82670 0.76134 0.90162 1.90695 1.56557 1.49037 1.45509 1.46073 1.07394 1.72573 1.09996 1.22522 0.94531 0.99372 0.82403 0.87276 1.23866 0.93994 1.00533 1.01480 1.21348 0.86737 0.90784 0.95521 0.90205 1.42356 1.21502 1.61565 1.09380 1.19316 1.03136 1.26512 0.88620 0.90977 1.24768 0.97854 1.01237 0.96995 1.69652 1.18231 1.46667 1.23568 0.86175 0.78955 0.78613 0.82374 1.21630 1.21742 1.20670 1.24331 1.00447 0.96276 1.00766 0.92190 0.92764 0.92663 0.91434 0.90078 0.92137 0.89549 0.89446 0.89867 0.76611 0.91480 0.89984 0.78104 0.93426 0.90243 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.83 37.16 0.37 -0.98 16 2 C -0.11 -1.13 5.72 -26.73 -0.15 -1.28 16 3 C 0.10 1.06 2.37 -25.68 -0.06 1.00 16 4 H 0.08 1.04 7.53 -51.93 -0.39 0.65 16 5 O -0.37 -4.06 10.89 -35.23 -0.38 -4.44 16 6 C 0.05 0.42 7.70 37.74 0.29 0.71 16 7 C -0.15 -1.24 6.55 -25.20 -0.16 -1.40 16 8 C -0.14 -1.41 2.96 -89.76 -0.27 -1.68 16 9 H 0.11 0.92 8.06 -51.93 -0.42 0.50 16 10 C 0.52 6.65 7.05 -10.98 -0.08 6.58 16 11 O -0.54 -8.78 15.29 5.56 0.09 -8.70 16 12 N -0.71 -8.60 5.30 -53.02 -0.28 -8.88 16 13 C 0.12 1.68 4.24 -67.12 -0.28 1.39 16 14 H 0.11 1.66 7.46 -51.93 -0.39 1.27 16 15 C -0.16 -2.42 7.58 -25.92 -0.20 -2.61 16 16 C 0.17 3.21 4.48 -67.11 -0.30 2.91 16 17 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 18 N -0.71 -17.23 5.40 -52.63 -0.28 -17.52 16 19 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 23 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.18 -2.99 7.68 -25.92 -0.20 -3.19 16 28 H 0.06 0.56 7.92 -51.93 -0.41 0.14 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.85 8.03 -51.93 -0.42 0.44 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.76 7.85 -51.93 -0.41 0.36 16 37 H 0.40 3.96 8.73 -40.82 -0.36 3.61 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.38 9.83 7.92 -40.82 -0.32 9.50 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -31.36 351.55 -8.46 -39.83 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.30 Total: 10.07 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.29 Total: -5.81 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.16 Total: -53.29 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.30 Total: -13.14 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.36 -8.46 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022463467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.045 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds