Wall clock time and date at job start Tue Mar 31 2020 01:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.52536 * 2 1 4 4 O 1.21278 * 119.99815 * 239.99938 * 3 2 1 5 5 N 1.34776 * 119.99728 * 59.99919 * 3 2 1 6 6 C 1.46497 * 119.99532 * 179.97438 * 5 3 2 7 7 H 1.08998 * 112.85403 * 23.81034 * 6 5 3 8 8 C 1.53793 * 113.61160 * 155.00131 * 6 5 3 9 9 C 1.53781 * 87.07845 * 89.11793 * 8 6 5 10 10 H 1.09002 * 113.61228 * 139.98223 * 9 8 6 11 11 N 1.46500 * 113.61339 * 270.80169 * 9 8 6 12 12 C 1.36936 * 119.99618 * 203.47656 * 11 9 8 13 13 H 1.07990 * 120.00427 * 359.97438 * 12 11 9 14 14 C 1.38824 * 119.99622 * 179.97438 * 12 11 9 15 15 N 1.31617 * 120.00063 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99662 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47624 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47095 * 120.00335 * 16 14 12 19 19 H 1.48506 * 109.47025 * 239.99804 * 16 14 12 20 20 C 1.53777 * 113.61724 * 252.49827 * 6 5 3 21 21 C 1.53186 * 109.52250 * 239.87389 * 2 1 3 22 22 C 1.53312 * 108.96468 * 183.11260 * 21 2 1 23 23 C 1.53084 * 109.19553 * 56.94190 * 22 21 2 24 24 O 1.42894 * 109.42017 * 302.38805 * 23 22 21 25 25 C 1.42909 * 114.09528 * 61.15823 * 24 23 22 26 26 H 1.09003 * 109.47335 * 59.99783 * 1 2 3 27 27 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47259 * 300.00090 * 1 2 3 29 29 H 0.96998 * 119.99873 * 359.97438 * 5 3 2 30 30 H 1.09000 * 113.61258 * 334.56928 * 8 6 5 31 31 H 1.09001 * 113.68788 * 203.67855 * 8 6 5 32 32 H 0.96998 * 120.00149 * 23.46564 * 11 9 8 33 33 H 0.96996 * 120.00147 * 180.02562 * 15 14 12 34 34 H 1.08999 * 113.61947 * 156.34089 * 20 6 5 35 35 H 1.08997 * 113.61348 * 25.43304 * 20 6 5 36 36 H 1.09004 * 109.54116 * 302.92123 * 21 2 1 37 37 H 1.09003 * 109.54284 * 63.18313 * 21 2 1 38 38 H 1.08998 * 109.50225 * 297.02368 * 22 21 2 39 39 H 1.09001 * 109.55360 * 176.89168 * 22 21 2 40 40 H 1.09005 * 109.47646 * 182.40245 * 23 22 21 41 41 H 1.08999 * 109.49020 * 62.38377 * 23 22 21 42 42 H 1.09000 * 109.47884 * 178.86122 * 25 24 23 43 43 H 1.08996 * 109.49177 * 58.83377 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7313 1.8163 -0.9096 5 7 1.7088 2.2505 1.0108 6 6 2.1989 3.6310 1.0111 7 1 2.4429 3.9938 0.0126 8 6 1.3170 4.5977 1.8192 9 6 2.1771 4.2358 3.0415 10 1 2.4047 5.0874 3.6828 11 7 1.6779 3.0785 3.7884 12 6 2.0088 2.9207 5.1078 13 1 2.6380 3.6490 5.5976 14 6 1.5354 1.8244 5.8157 15 7 0.7682 0.9370 5.2189 16 14 1.9873 1.6087 7.6153 17 1 2.8534 2.7351 8.0467 18 1 0.7510 1.5924 8.4376 19 1 2.7164 0.3271 7.7924 20 6 3.3017 3.8931 2.0502 21 6 2.0419 -0.7246 -1.2488 22 6 3.5729 -0.7856 -1.1970 23 6 4.0055 -1.4794 0.0972 24 8 3.4695 -0.7725 1.2174 25 6 2.0416 -0.7242 1.2480 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.1505 1.9338 1.7381 30 1 0.2794 4.2746 1.9043 31 1 1.4122 5.6389 1.5111 32 1 1.1130 2.4242 3.3484 33 1 0.4371 0.1712 5.7136 34 1 3.9406 4.7413 1.8046 35 1 3.8664 3.0013 2.3219 36 1 1.6375 -1.7366 -1.2746 37 1 1.7269 -0.1819 -2.1401 38 1 3.9784 0.2259 -1.2212 39 1 3.9448 -1.3477 -2.0536 40 1 5.0938 -1.4873 0.1592 41 1 3.6338 -2.5041 0.1023 42 1 1.7150 -0.1880 2.1390 43 1 1.6438 -1.7388 1.2681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022899143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:11 Heat of formation + Delta-G solvation = -54.199339 kcal Electronic energy + Delta-G solvation = -24145.847969 eV Core-core repulsion = 20805.830499 eV Total energy + Delta-G solvation = -3340.017469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61206 -38.88528 -37.33578 -34.27020 -33.67055 -32.84660 -31.43630 -29.83809 -26.84553 -25.07537 -25.00790 -24.60506 -23.60311 -22.16399 -21.10559 -19.41668 -18.62889 -17.32422 -16.65241 -16.02173 -15.59537 -15.29405 -14.91851 -14.75519 -14.45457 -14.10753 -14.00144 -13.75372 -13.21420 -13.00684 -12.54345 -12.44977 -12.10261 -12.01849 -11.97751 -11.86048 -11.74395 -11.42821 -10.91340 -10.86689 -10.79273 -10.47442 -10.30347 -10.17118 -10.10077 -9.83508 -9.55776 -9.42091 -9.03593 -8.91894 -8.43769 -7.05024 -5.86601 -3.13994 3.01136 3.40502 3.47001 3.48439 3.55457 4.15490 4.53387 4.64439 4.81186 4.89559 5.07806 5.11908 5.23317 5.29574 5.33559 5.46519 5.52756 5.55718 5.59538 5.67409 5.72706 5.86514 5.88884 5.91955 5.95943 6.01410 6.08059 6.16359 6.17054 6.29289 6.32890 6.34926 6.57240 6.62482 6.77850 6.90890 7.20822 7.43057 7.67713 8.00385 8.33476 8.67149 9.44136 9.98276 10.31926 11.36672 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016252 B = 0.006335 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.501205 B = 4418.674195 C = 5301.790382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.538 3.462 4 O -0.550 6.550 5 N -0.696 5.696 6 C 0.125 3.875 7 H 0.089 0.911 8 C -0.168 4.168 9 C 0.164 3.836 10 H 0.065 0.935 11 N -0.703 5.703 12 C -0.239 4.239 13 H 0.074 0.926 14 C -0.010 4.010 15 N -0.934 5.934 16 Si 0.909 3.091 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.291 1.291 20 C -0.187 4.187 21 C -0.092 4.092 22 C -0.165 4.165 23 C 0.057 3.943 24 O -0.369 6.369 25 C 0.072 3.928 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.406 0.594 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.377 0.623 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.113 0.887 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.129 -2.328 -11.964 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C 0.324 3.676 4 O -0.429 6.429 5 N -0.349 5.349 6 C 0.019 3.981 7 H 0.107 0.893 8 C -0.207 4.207 9 C 0.052 3.948 10 H 0.083 0.917 11 N -0.343 5.343 12 C -0.370 4.370 13 H 0.092 0.908 14 C -0.206 4.206 15 N -0.582 5.582 16 Si 0.740 3.260 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.218 1.218 20 C -0.229 4.229 21 C -0.130 4.130 22 C -0.203 4.203 23 C -0.020 4.020 24 O -0.287 6.287 25 C -0.005 4.005 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.244 0.756 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.213 0.787 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.131 0.869 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.776 -1.957 -12.241 12.421 hybrid contribution -0.367 -0.759 0.956 1.275 sum 0.410 -2.716 -11.285 11.615 Atomic orbital electron populations 1.21786 0.91924 1.03064 1.03015 1.21515 0.97676 0.93825 0.99075 1.20111 0.79409 0.86627 0.81455 1.90561 1.38412 1.77059 1.36865 1.45824 1.52702 1.11566 1.24785 1.21732 0.96157 0.81465 0.98735 0.89311 1.23854 0.99519 0.98877 0.98500 1.21205 0.91874 0.91272 0.90445 0.91721 1.42189 1.58910 1.24204 1.09044 1.19322 1.25282 1.06062 0.86364 0.90839 1.24705 1.00141 0.97376 0.98397 1.69603 1.38675 1.13960 1.35967 0.86087 0.77485 0.77545 0.84867 1.20567 1.21908 1.21830 1.24269 0.98231 1.01758 0.98623 1.21422 0.95889 0.99303 0.96401 1.22398 0.96265 1.03975 0.97654 1.22598 0.98954 0.94205 0.86227 1.88073 1.19826 1.76057 1.44757 1.22732 0.81334 0.99679 0.96792 0.91936 0.91332 0.91210 0.75558 0.91220 0.89240 0.78733 0.93473 0.90664 0.90860 0.91644 0.91008 0.88575 0.91531 0.89319 0.93740 0.86859 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.38 37.16 0.31 -1.42 16 2 C -0.12 -1.72 0.63 -155.52 -0.10 -1.82 16 3 C 0.54 9.47 5.91 -10.98 -0.06 9.40 16 4 O -0.55 -10.85 13.44 5.56 0.07 -10.77 16 5 N -0.70 -12.36 4.91 -53.02 -0.26 -12.62 16 6 C 0.12 2.15 4.32 -67.12 -0.29 1.86 16 7 H 0.09 1.53 7.46 -51.93 -0.39 1.14 16 8 C -0.17 -2.71 7.58 -25.91 -0.20 -2.91 16 9 C 0.16 3.20 4.55 -67.12 -0.31 2.89 16 10 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 11 N -0.70 -16.64 5.17 -52.63 -0.27 -16.91 16 12 C -0.24 -6.39 9.97 -15.06 -0.15 -6.54 16 13 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 14 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 15 N -0.93 -26.14 13.06 55.49 0.72 -25.42 16 16 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 C -0.19 -3.43 7.68 -25.92 -0.20 -3.63 16 21 C -0.09 -1.21 4.47 -26.47 -0.12 -1.33 16 22 C -0.17 -2.26 5.82 -26.53 -0.15 -2.42 16 23 C 0.06 0.80 6.84 37.20 0.25 1.05 16 24 O -0.37 -6.63 10.45 -35.23 -0.37 -7.00 16 25 C 0.07 1.16 5.46 37.20 0.20 1.36 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.91 7.57 -51.93 -0.39 0.51 16 29 H 0.41 7.51 4.97 -40.82 -0.20 7.31 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.38 9.08 5.37 -40.82 -0.22 8.86 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.95 8.02 -51.93 -0.42 0.53 16 38 H 0.10 1.61 5.82 -51.93 -0.30 1.31 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.11 2.12 7.51 -51.93 -0.39 1.73 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -30.10 335.56 -7.90 -38.00 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -6.93 Total: 16.70 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -0.90 Total: -3.86 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.19 Total: -54.95 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.29 Total: -17.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.10 -7.90 -38.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022899143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.201 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds