Wall clock time and date at job start Tue Mar 31 2020 01:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.52536 * 2 1 4 4 O 1.21278 * 119.99815 * 239.99938 * 3 2 1 5 5 N 1.34776 * 119.99728 * 59.99919 * 3 2 1 6 6 C 1.46497 * 119.99532 * 179.97438 * 5 3 2 7 7 H 1.08998 * 112.85403 * 23.81034 * 6 5 3 8 8 C 1.53793 * 113.61160 * 155.00131 * 6 5 3 9 9 C 1.53781 * 87.07845 * 89.11793 * 8 6 5 10 10 H 1.09002 * 113.61228 * 139.98223 * 9 8 6 11 11 N 1.46500 * 113.61339 * 270.80169 * 9 8 6 12 12 C 1.36936 * 119.99618 * 203.47656 * 11 9 8 13 13 H 1.07990 * 120.00427 * 359.97438 * 12 11 9 14 14 C 1.38824 * 119.99622 * 179.97438 * 12 11 9 15 15 N 1.31617 * 120.00063 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99662 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47624 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47095 * 120.00335 * 16 14 12 19 19 H 1.48506 * 109.47025 * 239.99804 * 16 14 12 20 20 C 1.53777 * 113.61724 * 252.49827 * 6 5 3 21 21 C 1.53186 * 109.52250 * 239.87389 * 2 1 3 22 22 C 1.53312 * 108.96468 * 183.11260 * 21 2 1 23 23 C 1.53084 * 109.19553 * 56.94190 * 22 21 2 24 24 O 1.42894 * 109.42017 * 302.38805 * 23 22 21 25 25 C 1.42909 * 114.09528 * 61.15823 * 24 23 22 26 26 H 1.09003 * 109.47335 * 59.99783 * 1 2 3 27 27 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47259 * 300.00090 * 1 2 3 29 29 H 0.96998 * 119.99873 * 359.97438 * 5 3 2 30 30 H 1.09000 * 113.61258 * 334.56928 * 8 6 5 31 31 H 1.09001 * 113.68788 * 203.67855 * 8 6 5 32 32 H 0.96998 * 120.00149 * 23.46564 * 11 9 8 33 33 H 0.96996 * 120.00147 * 180.02562 * 15 14 12 34 34 H 1.08999 * 113.61947 * 156.34089 * 20 6 5 35 35 H 1.08997 * 113.61348 * 25.43304 * 20 6 5 36 36 H 1.09004 * 109.54116 * 302.92123 * 21 2 1 37 37 H 1.09003 * 109.54284 * 63.18313 * 21 2 1 38 38 H 1.08998 * 109.50225 * 297.02368 * 22 21 2 39 39 H 1.09001 * 109.55360 * 176.89168 * 22 21 2 40 40 H 1.09005 * 109.47646 * 182.40245 * 23 22 21 41 41 H 1.08999 * 109.49020 * 62.38377 * 23 22 21 42 42 H 1.09000 * 109.47884 * 178.86122 * 25 24 23 43 43 H 1.08996 * 109.49177 * 58.83377 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7313 1.8163 -0.9096 5 7 1.7088 2.2505 1.0108 6 6 2.1989 3.6310 1.0111 7 1 2.4429 3.9938 0.0126 8 6 1.3170 4.5977 1.8192 9 6 2.1771 4.2358 3.0415 10 1 2.4047 5.0874 3.6828 11 7 1.6779 3.0785 3.7884 12 6 2.0088 2.9207 5.1078 13 1 2.6380 3.6490 5.5976 14 6 1.5354 1.8244 5.8157 15 7 0.7682 0.9370 5.2189 16 14 1.9873 1.6087 7.6153 17 1 2.8534 2.7351 8.0467 18 1 0.7510 1.5924 8.4376 19 1 2.7164 0.3271 7.7924 20 6 3.3017 3.8931 2.0502 21 6 2.0419 -0.7246 -1.2488 22 6 3.5729 -0.7856 -1.1970 23 6 4.0055 -1.4794 0.0972 24 8 3.4695 -0.7725 1.2174 25 6 2.0416 -0.7242 1.2480 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.1505 1.9338 1.7381 30 1 0.2794 4.2746 1.9043 31 1 1.4122 5.6389 1.5111 32 1 1.1130 2.4242 3.3484 33 1 0.4371 0.1712 5.7136 34 1 3.9406 4.7413 1.8046 35 1 3.8664 3.0013 2.3219 36 1 1.6375 -1.7366 -1.2746 37 1 1.7269 -0.1819 -2.1401 38 1 3.9784 0.2259 -1.2212 39 1 3.9448 -1.3477 -2.0536 40 1 5.0938 -1.4873 0.1592 41 1 3.6338 -2.5041 0.1023 42 1 1.7150 -0.1880 2.1390 43 1 1.6438 -1.7388 1.2681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022899143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:11 Heat of formation + Delta-G solvation = -74.293390 kcal Electronic energy + Delta-G solvation = -24146.719312 eV Core-core repulsion = 20805.830499 eV Total energy + Delta-G solvation = -3340.888813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.91180 -40.28207 -38.73602 -35.50048 -35.47184 -34.28549 -32.70896 -31.70227 -27.91136 -26.58142 -26.43286 -26.02436 -25.16425 -23.50087 -22.38002 -20.83793 -20.06137 -19.19052 -17.98553 -17.31924 -16.91237 -16.68676 -16.49383 -16.24278 -15.83046 -15.58717 -15.35209 -15.05286 -14.81672 -14.71818 -13.69139 -13.58394 -13.48125 -13.30220 -13.19509 -13.17019 -13.00441 -12.88244 -12.81743 -12.53063 -12.10323 -11.99823 -11.76906 -11.70009 -11.55194 -11.45133 -11.12946 -10.81527 -10.66035 -10.32080 -9.87096 -8.98341 -7.93518 -5.20081 1.48426 1.50223 1.58391 1.64449 2.23140 2.57611 2.97391 3.39299 3.49831 3.58894 3.68320 3.80011 3.90899 3.95641 4.04277 4.11297 4.25065 4.32957 4.37475 4.47352 4.50102 4.69405 4.73494 4.74855 4.83626 4.86244 4.87183 4.91062 4.97337 5.01706 5.07497 5.16465 5.23282 5.24513 5.37601 5.46664 5.55906 5.77518 6.25740 6.30490 6.59221 7.27247 7.37043 8.08842 8.32807 9.29386 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016252 B = 0.006335 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.501205 B = 4418.674195 C = 5301.790382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.530 3.470 4 O -0.575 6.575 5 N -0.700 5.700 6 C 0.122 3.878 7 H 0.094 0.906 8 C -0.143 4.143 9 C 0.147 3.853 10 H 0.068 0.932 11 N -0.714 5.714 12 C -0.245 4.245 13 H 0.073 0.927 14 C -0.064 4.064 15 N -0.956 5.956 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.292 1.292 19 H -0.298 1.298 20 C -0.179 4.179 21 C -0.090 4.090 22 C -0.162 4.162 23 C 0.051 3.949 24 O -0.408 6.408 25 C 0.075 3.925 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.401 0.599 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.373 0.627 33 H 0.252 0.748 34 H 0.103 0.897 35 H 0.034 0.966 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 -2.489 -12.997 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C 0.318 3.682 4 O -0.455 6.455 5 N -0.351 5.351 6 C 0.016 3.984 7 H 0.112 0.888 8 C -0.182 4.182 9 C 0.037 3.963 10 H 0.086 0.914 11 N -0.354 5.354 12 C -0.376 4.376 13 H 0.091 0.909 14 C -0.258 4.258 15 N -0.606 5.606 16 Si 0.796 3.204 17 H -0.196 1.196 18 H -0.219 1.219 19 H -0.225 1.225 20 C -0.221 4.221 21 C -0.128 4.128 22 C -0.200 4.200 23 C -0.025 4.025 24 O -0.327 6.327 25 C -0.003 4.003 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.239 0.761 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.207 0.793 33 H 0.061 0.939 34 H 0.121 0.879 35 H 0.053 0.947 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.406 -2.080 -13.291 13.459 hybrid contribution -0.159 -0.663 1.249 1.423 sum 0.246 -2.743 -12.042 12.353 Atomic orbital electron populations 1.21795 0.90054 1.04711 1.02828 1.21545 0.99104 0.91683 0.99265 1.20734 0.78857 0.87797 0.80851 1.90545 1.39414 1.77819 1.37706 1.45934 1.52546 1.11969 1.24698 1.21810 0.96016 0.81784 0.98757 0.88782 1.23743 0.98454 1.00535 0.95476 1.21471 0.93395 0.90091 0.91389 0.91368 1.42300 1.59112 1.25479 1.08519 1.19613 1.24511 1.05766 0.87750 0.90914 1.25388 1.00946 0.97630 1.01789 1.69724 1.39754 1.14257 1.36902 0.85187 0.77055 0.77138 0.81011 1.19639 1.21899 1.22546 1.24204 0.98106 1.01094 0.98708 1.21477 0.95392 1.00693 0.95201 1.22335 0.96807 1.02266 0.98542 1.22820 0.99339 0.95117 0.85182 1.88011 1.20823 1.77104 1.46736 1.22655 0.80890 1.00660 0.96046 0.90993 0.88785 0.92510 0.76107 0.91491 0.85555 0.79274 0.93934 0.87884 0.94699 0.88545 0.91032 0.92137 0.88751 0.88831 0.91125 0.90438 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.38 71.98 0.60 -2.56 16 2 C -0.11 -3.21 0.63 -52.84 -0.03 -3.24 16 3 C 0.53 18.78 5.91 87.66 0.52 19.30 16 4 O -0.57 -22.79 13.44 -3.02 -0.04 -22.83 16 5 N -0.70 -25.23 4.91 -440.04 -2.16 -27.40 16 6 C 0.12 4.14 4.32 45.52 0.20 4.34 16 7 H 0.09 3.13 7.46 -2.39 -0.02 3.11 16 8 C -0.14 -4.37 7.58 31.12 0.24 -4.13 16 9 C 0.15 5.65 4.55 45.52 0.21 5.86 16 10 H 0.07 2.56 8.11 -2.39 -0.02 2.54 16 11 N -0.71 -34.30 5.17 -320.44 -1.66 -35.96 16 12 C -0.24 -13.21 9.97 84.04 0.84 -12.37 16 13 H 0.07 3.85 7.83 -2.92 -0.02 3.82 16 14 C -0.06 -3.55 5.50 84.87 0.47 -3.09 16 15 N -0.96 -54.62 13.06 21.66 0.28 -54.34 16 16 Si 0.97 45.38 29.55 68.60 2.03 47.40 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 19 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 20 C -0.18 -6.55 7.68 31.12 0.24 -6.32 16 21 C -0.09 -2.16 4.47 30.76 0.14 -2.02 16 22 C -0.16 -4.20 5.82 30.73 0.18 -4.02 16 23 C 0.05 1.38 6.84 72.01 0.49 1.87 16 24 O -0.41 -14.80 10.45 -148.98 -1.56 -16.36 16 25 C 0.07 2.41 5.46 72.01 0.39 2.80 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 1.46 7.57 -2.39 -0.02 1.44 16 29 H 0.40 15.34 4.97 -92.71 -0.46 14.88 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.37 18.42 5.37 -92.71 -0.50 17.92 16 33 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.07 1.74 8.02 -2.39 -0.02 1.72 16 38 H 0.06 2.03 5.82 -2.39 -0.01 2.02 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 3.04 7.51 -2.39 -0.02 3.03 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -66.22 335.56 1.42 -64.80 By element: Atomic # 1 Polarization: 48.22 SS G_CDS: 0.05 Total: 48.27 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 4.47 Total: -3.59 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -3.53 Total: -117.69 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.60 Total: -39.19 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.22 1.42 -64.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022899143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.493 kcal (2) G-P(sol) polarization free energy of solvation -66.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds