Wall clock time and date at job start Tue Mar 31 2020 01:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.51940 * 2 1 4 4 O 1.21280 * 119.99609 * 120.00026 * 3 2 1 5 5 N 1.34773 * 120.00042 * 299.99914 * 3 2 1 6 6 C 1.46503 * 120.00095 * 180.02562 * 5 3 2 7 7 H 1.09008 * 112.84627 * 336.19786 * 6 5 3 8 8 C 1.53946 * 113.74363 * 107.40169 * 6 5 3 9 9 C 1.53778 * 87.02261 * 139.94754 * 8 6 5 10 10 H 1.08995 * 113.61507 * 89.22652 * 9 8 6 11 11 N 1.46504 * 113.61683 * 220.05156 * 9 8 6 12 12 C 1.36934 * 119.99567 * 254.13510 * 11 9 8 13 13 H 1.08001 * 120.00537 * 359.97438 * 12 11 9 14 14 C 1.38811 * 119.99798 * 179.97438 * 12 11 9 15 15 N 1.31624 * 120.00134 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00229 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 299.99987 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00079 * 16 14 12 20 20 C 1.53780 * 113.61658 * 205.00211 * 6 5 3 21 21 C 1.53172 * 109.52252 * 120.12576 * 2 1 3 22 22 C 1.53312 * 108.96790 * 176.89218 * 21 2 1 23 23 C 1.53090 * 109.19302 * 303.05792 * 22 21 2 24 24 O 1.42908 * 109.41426 * 57.60814 * 23 22 21 25 25 C 1.42898 * 114.09745 * 298.84021 * 24 23 22 26 26 H 1.09003 * 109.47220 * 60.00149 * 1 2 3 27 27 H 1.09007 * 109.46767 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47369 * 299.99660 * 1 2 3 29 29 H 0.96998 * 120.00321 * 359.97438 * 5 3 2 30 30 H 1.09001 * 113.61565 * 25.42317 * 8 6 5 31 31 H 1.09008 * 113.66663 * 254.47486 * 8 6 5 32 32 H 0.97000 * 119.99825 * 74.12690 * 11 9 8 33 33 H 0.97005 * 119.99717 * 0.02562 * 15 14 12 34 34 H 1.09002 * 113.61740 * 105.38525 * 20 6 5 35 35 H 1.08997 * 113.61121 * 334.47740 * 20 6 5 36 36 H 1.09003 * 109.54343 * 296.82023 * 21 2 1 37 37 H 1.08999 * 109.54521 * 57.08366 * 21 2 1 38 38 H 1.09003 * 109.50734 * 183.14324 * 22 21 2 39 39 H 1.09003 * 109.55608 * 63.00438 * 22 21 2 40 40 H 1.08997 * 109.48073 * 297.62237 * 23 22 21 41 41 H 1.09005 * 109.48664 * 177.59619 * 23 22 21 42 42 H 1.09003 * 109.48125 * 301.17578 * 25 24 23 43 43 H 1.08995 * 109.49065 * 181.15177 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7312 1.8164 0.9096 5 7 1.7087 2.2505 -1.0108 6 6 2.1987 3.6312 -1.0111 7 1 2.4427 3.9939 -0.0125 8 6 3.3046 3.8963 -2.0487 9 6 2.6195 5.2470 -2.3153 10 1 2.9777 6.0523 -1.6742 11 7 2.5871 5.6191 -3.7319 12 6 3.4201 6.5993 -4.2014 13 1 4.1006 7.0984 -3.5274 14 6 3.3898 6.9516 -5.5438 15 7 2.5608 6.3431 -6.3654 16 14 4.5255 8.2893 -6.1843 17 1 4.3002 8.4748 -7.6402 18 1 4.2421 9.5617 -5.4729 19 1 5.9376 7.8944 -5.9488 20 6 1.3167 4.5977 -1.8191 21 6 2.0419 -0.7246 1.2487 22 6 3.5730 -0.7855 1.1970 23 6 4.0056 -1.4793 -0.0972 24 8 3.4695 -0.7722 -1.2174 25 6 2.0417 -0.7241 -1.2480 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.1511 1.9337 -1.7385 30 1 3.2762 3.2166 -2.9004 31 1 4.2996 3.9898 -1.6135 32 1 1.9757 5.1711 -4.3372 33 1 1.9708 5.6487 -6.0327 34 1 0.7092 5.2567 -1.1988 35 1 0.7439 4.1102 -2.6079 36 1 1.7269 -0.1819 2.1400 37 1 1.6377 -1.7365 1.2745 38 1 3.9440 -1.3483 2.0536 39 1 3.9794 0.2257 1.2217 40 1 3.6338 -2.5039 -0.1023 41 1 5.0939 -1.4872 -0.1593 42 1 1.6441 -1.7388 -1.2681 43 1 1.7148 -0.1880 -2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022899144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:12 Heat of formation + Delta-G solvation = -84.978606 kcal Electronic energy + Delta-G solvation = -23037.598510 eV Core-core repulsion = 19696.246351 eV Total energy + Delta-G solvation = -3341.352159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.89965 -40.21039 -38.82838 -36.14097 -35.53430 -34.49098 -32.84931 -31.44321 -27.91293 -26.65283 -26.39929 -26.02754 -25.01486 -23.43286 -22.32024 -21.22910 -20.18550 -19.46286 -18.01062 -17.66795 -17.05213 -16.82815 -16.55763 -16.14988 -15.82325 -15.67899 -15.47202 -15.21961 -15.07882 -14.50540 -13.89536 -13.62826 -13.45670 -13.42309 -13.20680 -13.01509 -12.91195 -12.88600 -12.67583 -12.21204 -12.16805 -12.02270 -11.85672 -11.82306 -11.56306 -11.47240 -11.19411 -10.88918 -10.69185 -10.34919 -9.98455 -9.10923 -8.40522 -5.34257 1.58625 1.61863 1.68252 1.84718 2.17289 2.71370 2.94250 3.36489 3.47438 3.56961 3.60617 3.72256 3.81449 3.82723 3.94668 4.05445 4.12065 4.20492 4.24189 4.44126 4.50521 4.61142 4.66382 4.68872 4.73376 4.75503 4.78409 4.84889 4.92099 5.00534 5.03255 5.04564 5.17413 5.22590 5.28781 5.44940 5.57615 5.63060 6.20630 6.49308 6.56860 7.08103 7.26187 7.98458 8.09613 9.11463 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029110 B = 0.003458 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.639593 B = 8094.682926 C = 8291.280840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.525 3.475 4 O -0.578 6.578 5 N -0.705 5.705 6 C 0.140 3.860 7 H 0.103 0.897 8 C -0.168 4.168 9 C 0.154 3.846 10 H 0.074 0.926 11 N -0.735 5.735 12 C -0.338 4.338 13 H 0.065 0.935 14 C -0.101 4.101 15 N -0.974 5.974 16 Si 1.126 2.874 17 H -0.291 1.291 18 H -0.277 1.277 19 H -0.281 1.281 20 C -0.136 4.136 21 C -0.093 4.093 22 C -0.167 4.167 23 C 0.056 3.944 24 O -0.408 6.408 25 C 0.068 3.932 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.409 0.591 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.363 0.637 33 H 0.245 0.755 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 -18.843 15.187 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C 0.313 3.687 4 O -0.457 6.457 5 N -0.355 5.355 6 C 0.034 3.966 7 H 0.121 0.879 8 C -0.211 4.211 9 C 0.044 3.956 10 H 0.092 0.908 11 N -0.375 5.375 12 C -0.470 4.470 13 H 0.083 0.917 14 C -0.293 4.293 15 N -0.621 5.621 16 Si 0.951 3.049 17 H -0.217 1.217 18 H -0.203 1.203 19 H -0.207 1.207 20 C -0.176 4.176 21 C -0.131 4.131 22 C -0.204 4.204 23 C -0.020 4.020 24 O -0.327 6.327 25 C -0.009 4.009 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.246 0.754 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.195 0.805 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.498 -17.480 14.489 23.145 hybrid contribution -0.710 -0.964 0.975 1.544 sum -5.209 -18.444 15.464 24.626 Atomic orbital electron populations 1.21815 0.89430 1.04880 1.03245 1.21586 0.99406 0.91007 0.99636 1.20963 0.78772 0.88112 0.80859 1.90604 1.39340 1.77940 1.37856 1.45880 1.52979 1.11449 1.25188 1.22069 0.94881 0.81349 0.98346 0.87911 1.24154 0.98252 1.00171 0.98477 1.21600 0.95656 0.93491 0.84867 0.90818 1.42484 1.45763 1.44038 1.05209 1.20451 1.16482 1.14171 0.95848 0.91709 1.27169 1.03444 1.05735 0.92916 1.71000 1.26157 1.27955 1.37033 0.82643 0.73717 0.73241 0.75286 1.21738 1.20256 1.20706 1.23627 0.97127 0.97622 0.99200 1.21482 0.95120 1.00866 0.95639 1.22357 0.97108 1.02111 0.98865 1.22753 0.99274 0.95121 0.84825 1.87977 1.21147 1.77151 1.46426 1.22837 0.80783 1.01332 0.95935 0.90893 0.88579 0.92082 0.75445 0.91435 0.93501 0.80456 0.94458 0.89739 0.89272 0.91895 0.88297 0.89452 0.92525 0.90661 0.89195 0.88974 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.38 71.98 0.60 -0.96 16 2 C -0.11 -2.00 0.63 -52.84 -0.03 -2.04 16 3 C 0.52 13.99 5.91 87.66 0.52 14.51 16 4 O -0.58 -19.97 13.44 -3.03 -0.04 -20.01 16 5 N -0.70 -17.85 5.14 -439.76 -2.26 -20.11 16 6 C 0.14 4.24 4.24 45.57 0.19 4.43 16 7 H 0.10 3.32 7.46 -2.38 -0.02 3.30 16 8 C -0.17 -6.27 7.69 31.18 0.24 -6.03 16 9 C 0.15 6.21 4.47 45.52 0.20 6.41 16 10 H 0.07 3.03 8.11 -2.39 -0.02 3.01 16 11 N -0.74 -37.21 5.41 -320.45 -1.73 -38.95 16 12 C -0.34 -19.30 9.97 84.03 0.84 -18.46 16 13 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 14 C -0.10 -5.93 5.50 84.86 0.47 -5.46 16 15 N -0.97 -60.94 13.70 21.65 0.30 -60.64 16 16 Si 1.13 52.47 29.92 68.60 2.05 54.52 16 17 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 18 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 C -0.14 -4.17 7.58 31.12 0.24 -3.94 16 21 C -0.09 -1.59 4.46 30.76 0.14 -1.45 16 22 C -0.17 -3.38 5.81 30.73 0.18 -3.20 16 23 C 0.06 1.06 6.84 72.01 0.49 1.55 16 24 O -0.41 -9.85 10.45 -148.98 -1.56 -11.41 16 25 C 0.07 1.15 5.46 72.01 0.39 1.55 16 26 H 0.07 0.73 7.57 -2.39 -0.02 0.71 16 27 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.41 8.29 7.55 -92.71 -0.70 7.59 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.36 18.82 6.74 -92.71 -0.62 18.19 16 33 H 0.25 15.16 6.77 -92.70 -0.63 14.53 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.09 2.60 8.09 -2.39 -0.02 2.58 16 36 H 0.06 1.22 8.02 -2.39 -0.02 1.20 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.64 5.83 -2.39 -0.01 1.62 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 1.58 7.51 -2.39 -0.02 1.56 16 Total: -1.00 -74.58 339.24 1.05 -73.52 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: -0.17 Total: 36.16 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 4.47 Total: -13.09 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -3.69 Total: -119.70 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.60 Total: -31.42 kcal Atomic # 14 Polarization: 52.47 SS G_CDS: 2.05 Total: 54.52 kcal Total: -74.58 1.05 -73.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022899144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.455 kcal (2) G-P(sol) polarization free energy of solvation -74.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds