Wall clock time and date at job start Tue Mar 31 2020 02:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47603 * 2 1 4 4 H 1.09002 * 109.47482 * 305.02367 * 3 2 1 5 5 C 1.53093 * 109.48175 * 185.00392 * 3 2 1 6 6 C 1.53182 * 109.16203 * 182.39602 * 5 3 2 7 7 H 1.09000 * 109.54513 * 176.93676 * 6 5 3 8 8 C 1.50701 * 109.54043 * 297.11019 * 6 5 3 9 9 O 1.21278 * 120.00389 * 0.02562 * 8 6 5 10 10 N 1.34778 * 119.99914 * 179.97438 * 8 6 5 11 11 C 1.46493 * 120.00335 * 180.02562 * 10 8 6 12 12 C 1.53493 * 114.20968 * 155.00388 * 11 10 8 13 13 N 1.47058 * 87.98843 * 87.51984 * 12 11 10 14 14 C 1.36939 * 136.05576 * 206.86742 * 13 12 11 15 15 H 1.07999 * 120.00262 * 6.89608 * 14 13 12 16 16 C 1.38820 * 119.99870 * 186.90334 * 14 13 12 17 17 N 1.31623 * 119.99962 * 7.45800 * 16 14 13 18 18 Si 1.86800 * 119.99890 * 187.46108 * 16 14 13 19 19 H 1.48508 * 109.46943 * 94.79809 * 18 16 14 20 20 H 1.48498 * 109.46995 * 214.79830 * 18 16 14 21 21 H 1.48493 * 109.47191 * 334.80093 * 18 16 14 22 22 C 1.47065 * 87.88764 * 27.11926 * 13 12 11 23 23 C 1.53173 * 109.03483 * 56.97670 * 6 5 3 24 24 C 1.53093 * 109.16633 * 303.02134 * 23 6 5 25 25 O 1.42896 * 109.41616 * 57.60820 * 24 23 6 26 26 H 1.08994 * 109.47458 * 59.99947 * 1 2 3 27 27 H 1.09002 * 109.47619 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46590 * 300.00229 * 1 2 3 29 29 H 1.09011 * 109.46980 * 239.99960 * 2 1 3 30 30 H 1.09004 * 109.47505 * 120.00214 * 2 1 3 31 31 H 1.09002 * 109.52384 * 62.48930 * 5 3 2 32 32 H 1.08997 * 109.52314 * 302.30000 * 5 3 2 33 33 H 0.97005 * 119.99687 * 0.02562 * 10 8 6 34 34 H 1.09008 * 113.41523 * 21.79880 * 11 10 8 35 35 H 1.09000 * 113.46649 * 332.73137 * 12 11 10 36 36 H 1.09007 * 113.46791 * 202.30009 * 12 11 10 37 37 H 0.96998 * 119.99720 * 180.02562 * 17 16 14 38 38 H 1.09003 * 113.46183 * 87.65927 * 22 13 12 39 39 H 1.08992 * 113.47023 * 218.10216 * 22 13 12 40 40 H 1.09005 * 109.52611 * 62.92693 * 23 6 5 41 41 H 1.09006 * 109.51902 * 183.11493 * 23 6 5 42 42 H 1.09003 * 109.47841 * 297.62646 * 24 23 6 43 43 H 1.08997 * 109.48065 * 177.59604 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6052 1.9817 -0.8416 5 6 3.5658 1.4444 -0.1259 6 6 4.0735 2.8884 -0.0649 7 1 5.1629 2.8937 -0.0993 8 6 3.5284 3.6642 -1.2363 9 8 2.8045 3.1179 -2.0415 10 7 3.8446 4.9655 -1.3885 11 6 3.3143 5.7199 -2.5268 12 6 3.2226 7.2338 -2.2908 13 7 4.6105 7.3395 -2.7654 14 6 5.6600 8.1951 -2.5609 15 1 5.5838 8.9754 -1.8181 16 6 6.8218 8.0595 -3.3085 17 7 6.8635 7.2080 -4.3113 18 14 8.3260 9.0855 -2.8912 19 1 9.2247 8.3072 -2.0012 20 1 9.0484 9.4358 -4.1405 21 1 7.9007 10.3291 -2.2000 22 6 4.3734 6.1257 -3.5612 23 6 3.5970 3.5307 1.2415 24 6 2.0701 3.4481 1.3145 25 8 1.6633 2.0814 1.2214 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 3.8534 0.9971 -1.0774 32 1 3.9996 0.8709 0.6932 33 1 4.4233 5.4026 -0.7442 34 1 2.4149 5.2793 -2.9573 35 1 3.1008 7.5030 -1.2416 36 1 2.5026 7.7316 -2.9405 37 1 7.6755 7.1130 -4.8334 38 1 3.9600 6.3284 -4.5492 39 1 5.2302 5.4527 -3.5921 40 1 4.0314 2.9994 2.0883 41 1 3.9070 4.5754 1.2679 42 1 1.6356 4.0136 0.4902 43 1 1.7284 3.8654 2.2617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031217192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:46 Heat of formation + Delta-G solvation = -39.181733 kcal Electronic energy + Delta-G solvation = -23254.982461 eV Core-core repulsion = 19915.616204 eV Total energy + Delta-G solvation = -3339.366257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.58175 -38.75161 -37.39699 -34.26481 -33.59608 -33.13018 -31.80249 -29.80344 -27.71752 -25.82965 -24.67065 -23.83774 -23.31947 -22.04352 -21.15637 -19.42952 -19.28806 -16.86688 -16.52371 -16.37926 -16.25601 -15.51608 -15.05514 -14.82795 -14.25090 -14.05154 -13.90377 -13.75017 -13.50367 -13.26870 -13.00363 -12.67309 -12.38085 -12.06875 -11.87234 -11.69650 -11.55753 -11.38811 -11.17715 -10.96068 -10.91084 -10.68872 -10.64577 -10.37995 -10.20612 -9.95322 -9.62383 -9.45510 -9.13544 -8.86074 -8.37310 -6.97635 -5.85140 -3.17493 2.90886 3.33282 3.38438 3.41213 3.52564 3.80390 4.39148 4.53704 4.71664 4.77378 4.87078 5.05482 5.14171 5.17125 5.23586 5.34619 5.39673 5.45209 5.48743 5.55824 5.59976 5.71633 5.81277 5.84452 5.92058 5.94310 5.99012 6.05983 6.10987 6.18863 6.22355 6.30552 6.37733 6.49347 6.78460 7.13208 7.26887 7.29667 7.47922 7.88236 7.98110 8.58967 8.95534 9.62559 10.56258 11.32858 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030572 B = 0.003845 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.643835 B = 7280.884582 C = 7425.048894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.078 3.922 4 H 0.087 0.913 5 C -0.126 4.126 6 C -0.113 4.113 7 H 0.101 0.899 8 C 0.516 3.484 9 O -0.548 6.548 10 N -0.688 5.688 11 C 0.083 3.917 12 C 0.108 3.892 13 N -0.607 5.607 14 C -0.224 4.224 15 H 0.082 0.918 16 C -0.005 4.005 17 N -0.916 5.916 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.150 3.850 23 C -0.146 4.146 24 C 0.061 3.939 25 O -0.381 6.381 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.404 0.596 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.254 0.746 38 H 0.038 0.962 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.791 -11.143 11.130 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.021 3.979 4 H 0.105 0.895 5 C -0.164 4.164 6 C -0.135 4.135 7 H 0.119 0.881 8 C 0.302 3.698 9 O -0.427 6.427 10 N -0.337 5.337 11 C -0.024 4.024 12 C -0.019 4.019 13 N -0.334 5.334 14 C -0.352 4.352 15 H 0.099 0.901 16 C -0.202 4.202 17 N -0.562 5.562 18 Si 0.742 3.258 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.023 3.977 23 C -0.184 4.184 24 C -0.016 4.016 25 O -0.301 6.301 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.239 0.761 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.068 -11.460 10.627 18.069 hybrid contribution 1.535 1.172 0.016 1.932 sum -7.533 -10.288 10.643 16.609 Atomic orbital electron populations 1.21704 0.95482 1.01099 1.02309 1.21509 0.96583 0.94730 1.02225 1.22444 0.93465 0.94176 0.87791 0.89492 1.21973 0.96942 0.94469 1.03043 1.21416 1.02262 0.96055 0.93731 0.88076 1.20464 0.80714 0.82171 0.86447 1.90610 1.37927 1.68976 1.45178 1.45497 1.50383 1.10021 1.27803 1.22607 0.98316 0.92257 0.89174 1.22773 0.89253 0.91823 0.98080 1.45847 1.05871 1.29513 1.52180 1.18944 0.90334 1.09864 1.16034 0.90072 1.24851 0.98663 0.99756 0.96962 1.69868 1.27388 1.38747 1.20153 0.86111 0.82904 0.79505 0.77265 1.21537 1.21690 1.20541 1.22423 0.94635 0.88264 0.92412 1.22185 0.97618 1.01866 0.96754 1.22517 0.93295 0.83683 1.02083 1.87854 1.78752 1.24259 1.39211 0.92791 0.93110 0.92147 0.90740 0.91675 0.90182 0.90874 0.76129 0.88575 0.93895 0.93804 0.93568 0.94405 0.91991 0.90046 0.90209 0.93154 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.81 37.15 0.36 -1.15 16 2 C -0.11 -1.21 5.64 -26.73 -0.15 -1.36 16 3 C 0.08 1.00 2.35 -26.68 -0.06 0.94 16 4 H 0.09 1.33 5.80 -51.93 -0.30 1.03 16 5 C -0.13 -1.52 4.56 -26.59 -0.12 -1.64 16 6 C -0.11 -1.41 3.04 -91.59 -0.28 -1.69 16 7 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 8 C 0.52 8.21 5.82 -10.98 -0.06 8.15 16 9 O -0.55 -10.20 13.43 5.56 0.07 -10.13 16 10 N -0.69 -11.46 5.27 -53.62 -0.28 -11.74 16 11 C 0.08 1.56 4.61 -67.82 -0.31 1.24 16 12 C 0.11 2.10 8.45 -8.52 -0.07 2.03 16 13 N -0.61 -14.94 3.76 -184.80 -0.70 -15.63 16 14 C -0.22 -6.07 10.73 -15.06 -0.16 -6.24 16 15 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 16 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 17 N -0.92 -26.96 11.86 55.49 0.66 -26.30 16 18 Si 0.91 21.62 29.56 -169.99 -5.02 16.60 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.15 3.50 7.02 -8.51 -0.06 3.44 16 23 C -0.15 -1.54 5.57 -26.59 -0.15 -1.69 16 24 C 0.06 0.70 6.62 37.21 0.25 0.95 16 25 O -0.38 -4.93 9.94 -35.23 -0.35 -5.28 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.65 7.83 -51.93 -0.41 0.24 16 29 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.01 8.03 -51.93 -0.42 0.59 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 6.42 8.18 -40.82 -0.33 6.09 16 34 H 0.10 1.76 7.46 -51.92 -0.39 1.38 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.62 7.63 -51.93 -0.40 1.22 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.78 7.52 -51.93 -0.39 0.39 16 42 H 0.05 0.65 7.38 -51.93 -0.38 0.27 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -31.30 340.39 -8.62 -39.92 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.21 Total: 4.68 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.92 Total: 2.75 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.32 Total: -53.67 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.28 Total: -15.41 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.30 -8.62 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031217192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.738 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds