Wall clock time and date at job start Tue Mar 31 2020 02:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47603 * 2 1 4 4 H 1.09002 * 109.47482 * 305.02367 * 3 2 1 5 5 C 1.53093 * 109.48175 * 185.00392 * 3 2 1 6 6 C 1.53182 * 109.16203 * 182.39602 * 5 3 2 7 7 H 1.09000 * 109.54513 * 176.93676 * 6 5 3 8 8 C 1.50701 * 109.54043 * 297.11019 * 6 5 3 9 9 O 1.21278 * 120.00389 * 0.02562 * 8 6 5 10 10 N 1.34778 * 119.99914 * 179.97438 * 8 6 5 11 11 C 1.46493 * 120.00335 * 180.02562 * 10 8 6 12 12 C 1.53493 * 114.20968 * 155.00388 * 11 10 8 13 13 N 1.47058 * 87.98843 * 87.51984 * 12 11 10 14 14 C 1.36939 * 136.05576 * 206.86742 * 13 12 11 15 15 H 1.07999 * 120.00262 * 6.89608 * 14 13 12 16 16 C 1.38820 * 119.99870 * 186.90334 * 14 13 12 17 17 N 1.31623 * 119.99962 * 7.45800 * 16 14 13 18 18 Si 1.86800 * 119.99890 * 187.46108 * 16 14 13 19 19 H 1.48508 * 109.46943 * 94.79809 * 18 16 14 20 20 H 1.48498 * 109.46995 * 214.79830 * 18 16 14 21 21 H 1.48493 * 109.47191 * 334.80093 * 18 16 14 22 22 C 1.47065 * 87.88764 * 27.11926 * 13 12 11 23 23 C 1.53173 * 109.03483 * 56.97670 * 6 5 3 24 24 C 1.53093 * 109.16633 * 303.02134 * 23 6 5 25 25 O 1.42896 * 109.41616 * 57.60820 * 24 23 6 26 26 H 1.08994 * 109.47458 * 59.99947 * 1 2 3 27 27 H 1.09002 * 109.47619 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46590 * 300.00229 * 1 2 3 29 29 H 1.09011 * 109.46980 * 239.99960 * 2 1 3 30 30 H 1.09004 * 109.47505 * 120.00214 * 2 1 3 31 31 H 1.09002 * 109.52384 * 62.48930 * 5 3 2 32 32 H 1.08997 * 109.52314 * 302.30000 * 5 3 2 33 33 H 0.97005 * 119.99687 * 0.02562 * 10 8 6 34 34 H 1.09008 * 113.41523 * 21.79880 * 11 10 8 35 35 H 1.09000 * 113.46649 * 332.73137 * 12 11 10 36 36 H 1.09007 * 113.46791 * 202.30009 * 12 11 10 37 37 H 0.96998 * 119.99720 * 180.02562 * 17 16 14 38 38 H 1.09003 * 113.46183 * 87.65927 * 22 13 12 39 39 H 1.08992 * 113.47023 * 218.10216 * 22 13 12 40 40 H 1.09005 * 109.52611 * 62.92693 * 23 6 5 41 41 H 1.09006 * 109.51902 * 183.11493 * 23 6 5 42 42 H 1.09003 * 109.47841 * 297.62646 * 24 23 6 43 43 H 1.08997 * 109.48065 * 177.59604 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6052 1.9817 -0.8416 5 6 3.5658 1.4444 -0.1259 6 6 4.0735 2.8884 -0.0649 7 1 5.1629 2.8937 -0.0993 8 6 3.5284 3.6642 -1.2363 9 8 2.8045 3.1179 -2.0415 10 7 3.8446 4.9655 -1.3885 11 6 3.3143 5.7199 -2.5268 12 6 3.2226 7.2338 -2.2908 13 7 4.6105 7.3395 -2.7654 14 6 5.6600 8.1951 -2.5609 15 1 5.5838 8.9754 -1.8181 16 6 6.8218 8.0595 -3.3085 17 7 6.8635 7.2080 -4.3113 18 14 8.3260 9.0855 -2.8912 19 1 9.2247 8.3072 -2.0012 20 1 9.0484 9.4358 -4.1405 21 1 7.9007 10.3291 -2.2000 22 6 4.3734 6.1257 -3.5612 23 6 3.5970 3.5307 1.2415 24 6 2.0701 3.4481 1.3145 25 8 1.6633 2.0814 1.2214 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 3.8534 0.9971 -1.0774 32 1 3.9996 0.8709 0.6932 33 1 4.4233 5.4026 -0.7442 34 1 2.4149 5.2793 -2.9573 35 1 3.1008 7.5030 -1.2416 36 1 2.5026 7.7316 -2.9405 37 1 7.6755 7.1130 -4.8334 38 1 3.9600 6.3284 -4.5492 39 1 5.2302 5.4527 -3.5921 40 1 4.0314 2.9994 2.0883 41 1 3.9070 4.5754 1.2679 42 1 1.6356 4.0136 0.4902 43 1 1.7284 3.8654 2.2617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031217192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:46 Heat of formation + Delta-G solvation = -60.097663 kcal Electronic energy + Delta-G solvation = -23255.889444 eV Core-core repulsion = 19915.616204 eV Total energy + Delta-G solvation = -3340.273240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.76129 -40.18067 -38.79329 -35.32741 -34.72507 -34.57544 -33.55415 -30.69353 -29.60859 -26.91927 -26.42470 -25.22943 -24.51936 -23.30498 -22.10500 -20.99783 -20.59128 -18.75669 -17.80525 -17.34214 -17.22774 -16.93847 -16.88191 -16.04138 -15.68950 -15.41594 -15.30270 -14.78308 -14.61696 -14.52451 -14.34715 -14.08958 -13.57852 -13.35293 -13.18600 -13.09317 -12.80044 -12.70880 -12.53054 -12.41944 -12.14567 -12.04825 -11.81016 -11.79274 -11.58873 -11.33769 -11.26974 -10.94784 -10.71724 -10.20309 -9.87058 -8.98038 -7.93974 -5.27226 1.46221 1.47453 1.56726 1.63111 2.21633 2.45974 2.89719 3.28976 3.42386 3.55924 3.70770 3.79266 3.85544 3.96952 4.08640 4.29598 4.32141 4.47212 4.47684 4.53944 4.55573 4.64548 4.74636 4.77959 4.85334 4.89115 4.91912 4.94493 5.04611 5.07700 5.12143 5.13667 5.17990 5.21420 5.34439 5.44584 5.46540 5.71059 5.86513 6.35444 6.63907 6.86555 7.28422 7.57597 8.57261 9.24599 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030572 B = 0.003845 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.643835 B = 7280.884582 C = 7425.048894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.078 3.922 4 H 0.056 0.944 5 C -0.125 4.125 6 C -0.110 4.110 7 H 0.114 0.886 8 C 0.514 3.486 9 O -0.577 6.577 10 N -0.687 5.687 11 C 0.110 3.890 12 C 0.115 3.885 13 N -0.631 5.631 14 C -0.227 4.227 15 H 0.092 0.908 16 C -0.067 4.067 17 N -0.955 5.955 18 Si 0.980 3.020 19 H -0.285 1.285 20 H -0.300 1.300 21 H -0.264 1.264 22 C 0.146 3.854 23 C -0.139 4.139 24 C 0.056 3.944 25 O -0.388 6.388 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.409 0.591 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.247 0.753 38 H 0.021 0.979 39 H 0.026 0.974 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.030 0.970 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 -11.177 13.638 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C 0.021 3.979 4 H 0.074 0.926 5 C -0.163 4.163 6 C -0.131 4.131 7 H 0.132 0.868 8 C 0.302 3.698 9 O -0.457 6.457 10 N -0.336 5.336 11 C 0.003 3.997 12 C -0.011 4.011 13 N -0.357 5.357 14 C -0.355 4.355 15 H 0.110 0.890 16 C -0.260 4.260 17 N -0.604 5.604 18 Si 0.808 3.192 19 H -0.212 1.212 20 H -0.228 1.228 21 H -0.188 1.188 22 C 0.018 3.982 23 C -0.177 4.177 24 C -0.020 4.020 25 O -0.308 6.308 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.245 0.755 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.039 0.961 39 H 0.044 0.956 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.048 0.952 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.186 -11.487 13.180 19.750 hybrid contribution 1.470 1.165 -0.774 2.029 sum -7.717 -10.322 12.407 17.889 Atomic orbital electron populations 1.21682 0.95267 1.01995 1.01434 1.21534 0.96812 0.93606 1.03024 1.22377 0.93853 0.94864 0.86801 0.92607 1.21985 0.96518 0.94366 1.03388 1.21489 1.02811 0.95830 0.93009 0.86781 1.21163 0.79877 0.81722 0.87004 1.90608 1.39147 1.69420 1.46522 1.45479 1.50614 1.10408 1.27143 1.22219 0.96586 0.92528 0.88359 1.22869 0.86745 0.92012 0.99426 1.46102 1.07752 1.29476 1.52400 1.19386 0.91069 1.09596 1.15466 0.89034 1.25696 1.01688 1.01381 0.97240 1.70065 1.27659 1.40963 1.21664 0.85036 0.79150 0.78475 0.76500 1.21202 1.22756 1.18839 1.22388 0.94673 0.87973 0.93151 1.22189 0.96821 1.02619 0.96045 1.22661 0.94001 0.82908 1.02464 1.87849 1.79087 1.24912 1.38937 0.93865 0.91334 0.92789 0.90244 0.90473 0.91222 0.88606 0.75487 0.87862 0.91446 0.92529 0.94415 0.96104 0.95595 0.87924 0.89188 0.95154 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.81 71.98 0.71 -2.14 16 2 C -0.11 -2.26 5.64 30.59 0.17 -2.09 16 3 C 0.08 1.92 2.35 30.63 0.07 1.99 16 4 H 0.06 1.73 5.80 -2.39 -0.01 1.72 16 5 C -0.12 -2.79 4.56 30.69 0.14 -2.65 16 6 C -0.11 -2.54 3.04 -11.42 -0.03 -2.58 16 7 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 8 C 0.51 16.04 5.82 87.66 0.51 16.55 16 9 O -0.58 -21.62 13.43 -3.02 -0.04 -21.66 16 10 N -0.69 -22.28 5.27 -441.95 -2.33 -24.61 16 11 C 0.11 4.10 4.61 45.47 0.21 4.31 16 12 C 0.12 4.32 8.45 83.18 0.70 5.02 16 13 N -0.63 -30.87 3.76 -738.58 -2.78 -33.65 16 14 C -0.23 -12.17 10.73 84.04 0.90 -11.27 16 15 H 0.09 4.60 7.84 -2.91 -0.02 4.58 16 16 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 17 N -0.96 -57.73 11.86 21.65 0.26 -57.47 16 18 Si 0.98 44.54 29.56 68.60 2.03 46.57 16 19 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 C 0.15 6.98 7.02 83.18 0.58 7.57 16 23 C -0.14 -2.53 5.57 30.68 0.17 -2.36 16 24 C 0.06 1.17 6.62 72.01 0.48 1.65 16 25 O -0.39 -9.38 9.94 -148.98 -1.48 -10.86 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.10 7.83 -2.38 -0.02 1.09 16 29 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 1.70 8.03 -2.39 -0.02 1.68 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.41 12.40 8.18 -92.70 -0.76 11.64 16 34 H 0.10 3.75 7.46 -2.38 -0.02 3.73 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.03 1.40 7.63 -2.39 -0.02 1.39 16 40 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.09 1.48 7.52 -2.38 -0.02 1.46 16 42 H 0.03 0.75 7.38 -2.39 -0.02 0.73 16 43 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -68.38 340.39 0.96 -67.41 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.23 Total: 23.52 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 5.08 Total: 10.75 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -4.85 Total: -115.73 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -1.52 Total: -32.52 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -68.38 0.96 -67.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031217192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.314 kcal (2) G-P(sol) polarization free energy of solvation -68.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds