Wall clock time and date at job start Tue Mar 31 2020 02:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00092 * 2 1 4 4 H 1.08999 * 109.46917 * 29.99512 * 3 2 1 5 5 C 1.50703 * 109.46803 * 269.99688 * 3 2 1 6 6 O 1.21282 * 120.00282 * 331.04306 * 5 3 2 7 7 N 1.34780 * 119.99645 * 151.04119 * 5 3 2 8 8 C 1.47861 * 126.94786 * 354.72021 * 7 5 3 9 9 C 1.56019 * 105.10684 * 181.97854 * 8 7 5 10 10 H 1.08997 * 116.24747 * 159.68273 * 9 8 7 11 11 C 1.57084 * 99.60375 * 32.80715 * 9 8 7 12 12 C 1.49287 * 126.93928 * 174.69360 * 7 5 3 13 13 H 1.09004 * 116.16048 * 15.86500 * 12 7 5 14 14 C 1.56018 * 104.09322 * 246.71816 * 12 7 5 15 15 N 1.47861 * 105.10592 * 288.77186 * 14 12 7 16 16 C 1.36942 * 126.94601 * 181.96412 * 15 14 12 17 17 H 1.07995 * 120.00197 * 180.02562 * 16 15 14 18 18 C 1.38808 * 120.00108 * 0.04542 * 16 15 14 19 19 N 1.31624 * 119.99984 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00358 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46943 * 89.99599 * 20 18 16 22 22 H 1.48499 * 109.47085 * 209.99647 * 20 18 16 23 23 H 1.48496 * 109.46718 * 329.99677 * 20 18 16 24 24 C 1.52996 * 109.46946 * 149.99812 * 3 2 1 25 25 C 1.53004 * 109.46944 * 185.64092 * 24 3 2 26 26 C 1.52996 * 109.47247 * 305.64387 * 24 3 2 27 27 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47347 * 300.00344 * 1 2 3 29 29 H 1.09000 * 109.46515 * 60.00255 * 1 2 3 30 30 H 1.09007 * 110.31731 * 63.07321 * 8 7 5 31 31 H 1.08997 * 110.31883 * 300.89282 * 8 7 5 32 32 H 1.08996 * 112.36922 * 64.27095 * 11 9 8 33 33 H 1.09006 * 112.36676 * 191.71761 * 11 9 8 34 34 H 1.09000 * 110.31967 * 169.86154 * 14 12 7 35 35 H 1.09004 * 110.31297 * 47.68039 * 14 12 7 36 36 H 0.96993 * 120.00202 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.47518 * 65.64511 * 24 3 2 38 38 H 1.08999 * 109.47621 * 295.79774 * 25 24 3 39 39 H 1.09006 * 109.46670 * 55.79599 * 25 24 3 40 40 H 1.09004 * 109.47105 * 175.78802 * 25 24 3 41 41 H 1.08995 * 109.47209 * 60.00325 * 26 24 3 42 42 H 1.09006 * 109.47361 * 180.02562 * 26 24 3 43 43 H 1.09005 * 109.47146 * 300.00080 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2146 1.7643 -1.4209 6 8 2.4090 0.9505 -2.2989 7 7 2.1814 3.0790 -1.7158 8 6 1.8513 4.1882 -0.7955 9 6 1.9166 5.4771 -1.6723 10 1 1.3855 6.3483 -1.2890 11 6 1.4299 4.8860 -3.0439 12 6 2.4709 3.7095 -3.0377 13 1 2.4723 3.0413 -3.8989 14 6 3.7802 4.5218 -2.7925 15 7 3.3736 5.6604 -1.9412 16 6 4.1723 6.6771 -1.4900 17 1 3.7553 7.4567 -0.8697 18 6 5.5177 6.7060 -1.8301 19 7 6.0260 5.7558 -2.5859 20 14 6.6074 8.0925 -1.2139 21 1 7.2012 7.7120 0.0929 22 1 7.6924 8.3433 -2.1964 23 1 5.7949 9.3244 -1.0486 24 6 3.3589 1.2632 0.7213 25 6 3.9156 2.6830 0.8452 26 6 3.1723 0.6649 2.1170 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 2.5830 4.2416 0.0107 31 1 0.8484 4.0573 -0.3892 32 1 0.4008 4.5294 -3.0001 33 1 1.5887 5.5759 -3.8727 34 1 4.1849 4.8820 -3.7383 35 1 4.5161 3.9062 -2.2751 36 1 6.9661 5.7761 -2.8239 37 1 4.0561 0.6480 0.1525 38 1 4.1188 3.0817 -0.1486 39 1 3.1856 3.3168 1.3488 40 1 4.8390 2.6619 1.4241 41 1 2.7757 -0.3465 2.0286 42 1 4.1331 0.6352 2.6310 43 1 2.4751 1.2801 2.6858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032605026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:08 Heat of formation + Delta-G solvation = -22.543826 kcal Electronic energy + Delta-G solvation = -24334.900167 eV Core-core repulsion = 20996.255384 eV Total energy + Delta-G solvation = -3338.644783 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39473 -38.71931 -36.84491 -34.96670 -33.57035 -31.52124 -29.25897 -28.60880 -27.78735 -26.99300 -25.79370 -25.09035 -23.34014 -21.26680 -19.96138 -19.89113 -18.42661 -17.58239 -16.76383 -16.28199 -15.85983 -15.49528 -14.90286 -14.51452 -14.30214 -14.03605 -13.54252 -13.21451 -13.08173 -12.70714 -12.50191 -12.22812 -12.15358 -11.82350 -11.71362 -11.43778 -11.25685 -11.16880 -10.96284 -10.90442 -10.86508 -10.72911 -10.60876 -10.47643 -10.33527 -10.16428 -10.02988 -9.65529 -8.99792 -8.68833 -7.98194 -6.95203 -5.79194 -3.13870 2.98723 3.24429 3.35163 3.40186 3.42863 3.84267 4.39401 4.73065 4.90282 4.95964 5.10497 5.17083 5.22557 5.31581 5.34862 5.36106 5.45413 5.53887 5.60671 5.61499 5.75040 5.75847 5.79134 5.88965 5.97808 6.09368 6.17858 6.25456 6.27424 6.38610 6.40095 6.48463 6.57196 6.62498 6.70161 7.06147 7.40367 7.47031 7.69796 8.06154 8.10219 8.61306 9.07665 9.68588 10.37681 11.32716 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.005856 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.651864 B = 4780.148602 C = 5417.487887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.086 3.914 4 H 0.076 0.924 5 C 0.506 3.494 6 O -0.542 6.542 7 N -0.603 5.603 8 C 0.066 3.934 9 C 0.141 3.859 10 H 0.106 0.894 11 C -0.150 4.150 12 C 0.096 3.904 13 H 0.112 0.888 14 C 0.175 3.825 15 N -0.595 5.595 16 C -0.232 4.232 17 H 0.080 0.920 18 C -0.004 4.004 19 N -0.918 5.918 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.084 4.084 25 C -0.155 4.155 26 C -0.139 4.139 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.254 0.746 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 -5.799 6.830 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.025 3.975 4 H 0.093 0.907 5 C 0.294 3.706 6 O -0.419 6.419 7 N -0.339 5.339 8 C -0.059 4.059 9 C 0.032 3.968 10 H 0.124 0.876 11 C -0.190 4.190 12 C -0.007 4.007 13 H 0.130 0.870 14 C 0.050 3.950 15 N -0.320 5.320 16 C -0.359 4.359 17 H 0.098 0.902 18 C -0.201 4.201 19 N -0.565 5.565 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.103 4.103 25 C -0.212 4.212 26 C -0.196 4.196 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.233 -6.420 6.379 13.661 hybrid contribution 0.446 0.926 0.292 1.069 sum -9.787 -5.494 6.671 13.056 Atomic orbital electron populations 1.22825 0.81271 1.02828 0.99820 1.87973 1.19403 1.25750 1.94477 1.22152 0.97006 0.85654 0.92716 0.90659 1.20821 0.77531 0.81113 0.91163 1.90658 1.49804 1.52337 1.49111 1.49300 1.67089 1.04613 1.12850 1.23680 0.98903 0.88560 0.94728 1.23165 0.87768 0.93499 0.92353 0.87647 1.24136 0.97094 0.97779 0.99966 1.24361 0.98243 0.92407 0.85675 0.86983 1.21931 0.90124 0.87263 0.95713 1.45221 1.02419 1.26100 1.58229 1.19025 0.89900 1.00836 1.26180 0.90199 1.24798 0.96884 0.98452 0.99946 1.69912 1.13027 1.33389 1.40162 0.86145 0.80426 0.81378 0.77924 1.21613 1.21710 1.20673 1.21102 0.93908 0.98747 0.96559 1.22114 1.00876 0.94154 1.04086 1.21739 1.01598 1.01193 0.95087 0.89421 0.94027 0.94147 0.89490 0.93296 0.91807 0.89805 0.92680 0.93399 0.93567 0.90030 0.90297 0.92275 0.91898 0.91881 0.92390 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.81 101.05 1.09 1.43 16 2 O -0.36 -5.54 9.14 -53.23 -0.49 -6.03 16 3 C 0.09 1.33 1.81 -27.88 -0.05 1.28 16 4 H 0.08 1.02 6.89 -51.93 -0.36 0.66 16 5 C 0.51 9.61 6.43 -10.98 -0.07 9.54 16 6 O -0.54 -12.27 17.07 -12.44 -0.21 -12.48 16 7 N -0.60 -11.01 2.35 -156.78 -0.37 -11.38 16 8 C 0.07 1.09 5.02 -1.68 -0.01 1.08 16 9 C 0.14 2.52 5.53 -62.55 -0.35 2.17 16 10 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 11 C -0.15 -2.51 6.81 -22.30 -0.15 -2.66 16 12 C 0.10 1.85 5.25 -62.55 -0.33 1.52 16 13 H 0.11 2.16 8.03 -51.93 -0.42 1.74 16 14 C 0.17 4.09 4.76 -1.68 -0.01 4.08 16 15 N -0.60 -13.73 3.02 -156.35 -0.47 -14.20 16 16 C -0.23 -5.94 10.38 -15.06 -0.16 -6.09 16 17 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 18 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 19 N -0.92 -26.11 10.56 55.49 0.59 -25.53 16 20 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.08 -1.25 2.68 -90.62 -0.24 -1.49 16 25 C -0.16 -2.43 7.38 37.16 0.27 -2.15 16 26 C -0.14 -1.66 8.99 37.16 0.33 -1.32 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.51 4.36 -51.93 -0.23 1.28 16 31 H 0.05 0.66 7.99 -51.93 -0.42 0.25 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.06 1.43 7.46 -51.93 -0.39 1.05 16 35 H 0.05 1.28 7.36 -51.93 -0.38 0.90 16 36 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.54 5.91 -51.93 -0.31 1.23 16 39 H 0.06 0.84 6.74 -51.93 -0.35 0.49 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.75 7.54 -51.93 -0.39 0.36 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 334.14 15.07 5.04 5.04 Total: -1.00 -31.03 334.14 -7.71 -38.74 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.00 Total: 2.45 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 0.24 Total: 7.18 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.26 Total: -51.11 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.70 Total: -18.51 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.03 -7.71 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032605026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.195 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds