Wall clock time and date at job start Tue Mar 31 2020 02:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47607 * 2 1 4 4 H 1.09000 * 110.27572 * 304.36615 * 3 2 1 5 5 C 1.54950 * 110.31335 * 182.16615 * 3 2 1 6 6 C 1.55306 * 100.94218 * 204.63914 * 5 3 2 7 7 C 1.54386 * 102.25271 * 34.13402 * 6 5 3 8 8 H 1.09002 * 109.83191 * 98.15473 * 7 6 5 9 9 C 1.50701 * 109.90638 * 219.08477 * 7 6 5 10 10 O 1.21283 * 119.99959 * 114.75988 * 9 7 6 11 11 N 1.34779 * 120.00084 * 294.77025 * 9 7 6 12 12 C 1.46504 * 119.99800 * 359.97438 * 11 9 7 13 13 C 1.46497 * 120.00040 * 179.97438 * 11 9 7 14 14 C 1.53941 * 113.74035 * 218.73737 * 13 11 9 15 15 N 1.47813 * 86.03596 * 222.08508 * 14 13 11 16 16 C 1.36941 * 134.45765 * 204.64672 * 15 14 13 17 17 H 1.08001 * 119.99906 * 179.86621 * 16 15 14 18 18 C 1.38810 * 119.99812 * 359.86638 * 16 15 14 19 19 N 1.31614 * 120.00139 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47093 * 59.99967 * 20 18 16 22 22 H 1.48500 * 109.47461 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47231 * 300.00223 * 20 18 16 24 24 C 1.47578 * 91.05065 * 24.55035 * 15 14 13 25 25 O 1.43241 * 107.58949 * 338.64218 * 7 6 5 26 26 H 1.09001 * 109.47472 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46911 * 300.00002 * 1 2 3 28 28 H 1.09004 * 109.47167 * 59.99999 * 1 2 3 29 29 H 1.08996 * 109.47200 * 239.99622 * 2 1 3 30 30 H 1.09005 * 109.46772 * 120.00357 * 2 1 3 31 31 H 1.09002 * 111.12166 * 322.56108 * 5 3 2 32 32 H 1.08997 * 111.12456 * 86.67754 * 5 3 2 33 33 H 1.09000 * 110.84977 * 275.94122 * 6 5 3 34 34 H 1.09001 * 110.84521 * 152.32116 * 6 5 3 35 35 H 1.08999 * 109.47095 * 90.00518 * 12 11 9 36 36 H 1.08991 * 109.46879 * 210.00142 * 12 11 9 37 37 H 1.08996 * 109.47047 * 330.00503 * 12 11 9 38 38 H 1.09000 * 112.94650 * 350.33224 * 13 11 9 39 39 H 1.09002 * 113.77351 * 336.34737 * 14 13 11 40 40 H 1.08998 * 113.76819 * 107.75345 * 14 13 11 41 41 H 0.97003 * 120.00160 * 179.97438 * 19 18 16 42 42 H 1.09002 * 113.77219 * 221.15085 * 24 15 14 43 43 H 1.09003 * 113.87363 * 89.76784 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6218 1.9909 -0.8440 5 6 3.5884 1.4654 -0.0549 6 6 3.8857 2.8474 0.5881 7 6 2.7562 2.9724 1.6331 8 1 3.1280 2.6831 2.6160 9 6 2.2509 4.3916 1.6753 10 8 1.1145 4.6411 1.3331 11 7 3.0621 5.3836 2.0931 12 6 4.4348 5.0821 2.5067 13 6 2.5711 6.7632 2.1336 14 6 3.6165 7.8061 1.6984 15 7 3.1273 8.6188 2.8320 16 6 3.1184 9.9577 3.1189 17 1 2.6853 10.3090 4.0438 18 6 3.6662 10.8635 2.2210 19 7 4.1937 10.4355 1.0937 20 14 3.6548 12.6900 2.6126 21 1 4.4074 12.9314 3.8698 22 1 4.2952 13.4386 1.5014 23 1 2.2532 13.1520 2.7782 24 6 2.6504 7.4085 3.5290 25 8 1.6988 2.0919 1.2350 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 4.0145 0.6562 0.5382 32 1 3.9456 1.4251 -1.0839 33 1 3.8177 3.6431 -0.1538 34 1 4.8628 2.8484 1.0711 35 1 5.0975 5.1504 1.6441 36 1 4.7511 5.7978 3.2654 37 1 4.4770 4.0737 2.9184 38 1 1.6025 6.8840 1.6486 39 1 4.6469 7.4692 1.8118 40 1 3.4169 8.2472 0.7219 41 1 4.5761 11.0685 0.4660 42 1 1.6808 7.5326 4.0114 43 1 3.3949 6.9532 4.1820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042831268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:35 Heat of formation + Delta-G solvation = -24.439755 kcal Electronic energy + Delta-G solvation = -22931.497752 eV Core-core repulsion = 19592.770755 eV Total energy + Delta-G solvation = -3338.726997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51866 -38.94599 -37.31323 -34.58232 -33.73691 -32.34832 -31.83642 -29.02655 -27.49782 -26.66854 -24.82383 -24.62426 -22.88310 -21.99094 -21.17508 -19.71355 -18.49450 -17.67153 -16.82893 -16.36479 -16.18621 -15.89086 -14.95237 -14.70136 -14.18632 -14.13507 -13.83840 -13.53408 -13.41399 -13.11092 -12.86776 -12.48962 -12.18118 -12.11397 -11.88358 -11.75241 -11.65495 -11.51887 -11.30080 -11.22083 -11.02691 -10.89435 -10.78307 -10.71419 -10.26938 -10.11950 -10.08165 -9.56596 -9.03468 -8.81624 -8.13085 -6.92606 -5.79996 -3.12796 2.83431 3.10158 3.39333 3.43165 3.44347 3.75738 4.22734 4.42066 4.45003 4.55799 4.80451 4.91726 4.95644 5.07100 5.18943 5.20968 5.24825 5.32930 5.44701 5.49042 5.49148 5.56971 5.59759 5.71262 5.74919 5.76674 5.83107 5.86209 6.02868 6.08770 6.16622 6.19062 6.43573 6.57486 6.76491 6.87368 7.17823 7.34488 7.50205 7.76729 7.93943 8.49195 9.01016 9.67185 10.54272 11.37195 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041142 B = 0.003331 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.413820 B = 8404.779332 C = 8554.655956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.076 3.924 4 H 0.072 0.928 5 C -0.151 4.151 6 C -0.145 4.145 7 C 0.067 3.933 8 H 0.103 0.897 9 C 0.497 3.503 10 O -0.529 6.529 11 N -0.598 5.598 12 C 0.076 3.924 13 C 0.091 3.909 14 C 0.158 3.842 15 N -0.606 5.606 16 C -0.224 4.224 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.108 3.892 25 O -0.347 6.347 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.255 0.745 42 H 0.047 0.953 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 -21.220 -1.659 21.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.018 3.982 4 H 0.090 0.910 5 C -0.188 4.188 6 C -0.183 4.183 7 C 0.006 3.994 8 H 0.120 0.880 9 C 0.284 3.716 10 O -0.404 6.404 11 N -0.333 5.333 12 C -0.068 4.068 13 C -0.013 4.013 14 C 0.032 3.968 15 N -0.333 5.333 16 C -0.351 4.351 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.745 3.255 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.019 4.019 25 O -0.265 6.265 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.920 -20.762 -1.801 20.860 hybrid contribution 0.492 1.145 0.200 1.262 sum 1.412 -19.617 -1.601 19.732 Atomic orbital electron populations 1.21721 0.95153 1.01254 1.02742 1.21638 0.97055 0.94526 1.02388 1.23115 0.93581 0.93681 0.87812 0.90981 1.23325 0.95970 0.97231 1.02288 1.23144 0.98544 0.98339 0.98279 1.22625 0.88024 0.88819 0.99966 0.87998 1.20922 0.85996 0.87022 0.77693 1.90687 1.18568 1.83714 1.47478 1.48025 1.12829 1.07936 1.64478 1.21862 0.82979 1.01175 1.00761 1.24029 1.00918 0.77469 0.98862 1.22656 0.93290 0.86161 0.94740 1.45690 1.68487 1.00153 1.18931 1.18955 1.33343 0.79522 1.03285 0.90093 1.24798 1.00573 0.98199 0.96763 1.69802 1.43802 1.33294 1.09896 0.86162 0.77746 0.84496 0.77123 1.21149 1.21516 1.20981 1.22968 0.97395 0.87529 0.94005 1.88521 1.41125 1.57360 1.39489 0.92970 0.91759 0.92771 0.90849 0.91291 0.90030 0.89629 0.89734 0.88918 0.92349 0.90245 0.91791 0.86742 0.95051 0.90569 0.93511 0.93507 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.83 37.15 0.37 -1.05 16 2 C -0.12 -1.01 5.68 -26.74 -0.15 -1.16 16 3 C 0.08 0.80 3.43 -25.71 -0.09 0.71 16 4 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 5 C -0.15 -1.21 6.57 -24.48 -0.16 -1.37 16 6 C -0.15 -1.38 5.32 -24.78 -0.13 -1.51 16 7 C 0.07 0.84 3.08 -27.16 -0.08 0.76 16 8 H 0.10 1.07 7.18 -51.93 -0.37 0.70 16 9 C 0.50 8.41 6.96 -10.98 -0.08 8.33 16 10 O -0.53 -11.32 16.00 -14.10 -0.23 -11.55 16 11 N -0.60 -9.79 3.09 -175.75 -0.54 -10.33 16 12 C 0.08 0.93 7.68 59.85 0.46 1.39 16 13 C 0.09 1.84 4.40 -70.15 -0.31 1.54 16 14 C 0.16 3.70 6.97 -2.84 -0.02 3.68 16 15 N -0.61 -15.70 3.70 -177.90 -0.66 -16.36 16 16 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 17 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -27.24 11.39 55.49 0.63 -26.61 16 20 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.11 2.29 8.45 -2.97 -0.03 2.26 16 25 O -0.35 -4.88 9.90 -54.88 -0.54 -5.42 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.72 7.91 -51.93 -0.41 0.31 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 34 H 0.09 0.66 7.46 -51.93 -0.39 0.27 16 35 H 0.06 0.66 8.02 -51.93 -0.42 0.24 16 36 H 0.08 1.06 6.35 -51.93 -0.33 0.73 16 37 H 0.06 0.58 5.98 -51.93 -0.31 0.27 16 38 H 0.11 2.58 7.22 -51.93 -0.37 2.21 16 39 H 0.03 0.72 6.83 -51.93 -0.35 0.36 16 40 H 0.08 2.01 7.16 -51.93 -0.37 1.64 16 41 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.69 6.84 -51.93 -0.36 0.33 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -33.99 339.49 -8.74 -42.73 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.02 Total: -1.55 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.48 Total: 6.81 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.57 Total: -53.29 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.77 Total: -16.97 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.99 -8.74 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042831268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.294 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds