Wall clock time and date at job start Tue Mar 31 2020 02:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47265 * 2 1 4 4 H 1.09004 * 110.27713 * 52.90626 * 3 2 1 5 5 C 1.54946 * 110.31335 * 175.00160 * 3 2 1 6 6 C 1.55300 * 100.94537 * 155.35839 * 5 3 2 7 7 C 1.54380 * 102.25447 * 325.86754 * 6 5 3 8 8 H 1.08997 * 109.83302 * 261.84675 * 7 6 5 9 9 C 1.50697 * 109.83121 * 140.86569 * 7 6 5 10 10 O 1.21280 * 120.00315 * 250.37497 * 9 7 6 11 11 N 1.34782 * 119.99894 * 70.37887 * 9 7 6 12 12 C 1.46497 * 119.99750 * 4.66466 * 11 9 7 13 13 C 1.46493 * 119.99908 * 184.67159 * 11 9 7 14 14 C 1.53950 * 113.74047 * 216.67319 * 13 11 9 15 15 N 1.47583 * 86.11680 * 222.04931 * 14 13 11 16 16 C 1.36943 * 134.49239 * 204.64321 * 15 14 13 17 17 H 1.07993 * 119.99872 * 179.97438 * 16 15 14 18 18 C 1.38817 * 119.99566 * 359.97438 * 16 15 14 19 19 N 1.31615 * 120.00230 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99695 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47320 * 59.99591 * 20 18 16 22 22 H 1.48498 * 109.47385 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46930 * 299.99770 * 20 18 16 24 24 C 1.47576 * 91.01775 * 24.63708 * 15 14 13 25 25 O 1.43248 * 107.58787 * 21.35653 * 7 6 5 26 26 H 1.08999 * 109.47079 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46722 * 300.00004 * 1 2 3 28 28 H 1.09002 * 109.47048 * 59.99834 * 1 2 3 29 29 H 1.09000 * 109.46722 * 239.99996 * 2 1 3 30 30 H 1.08994 * 109.47403 * 120.00108 * 2 1 3 31 31 H 1.09001 * 111.12327 * 37.43938 * 5 3 2 32 32 H 1.08999 * 111.16124 * 273.29819 * 5 3 2 33 33 H 1.09001 * 110.85076 * 207.67447 * 6 5 3 34 34 H 1.09007 * 110.84498 * 84.05576 * 6 5 3 35 35 H 1.09002 * 109.46782 * 84.39493 * 12 11 9 36 36 H 1.08998 * 109.47033 * 204.39165 * 12 11 9 37 37 H 1.09000 * 109.47551 * 324.39382 * 12 11 9 38 38 H 1.08998 * 112.94962 * 348.40021 * 13 11 9 39 39 H 1.09003 * 113.76840 * 336.34572 * 14 13 11 40 40 H 1.08992 * 113.77264 * 107.74464 * 14 13 11 41 41 H 0.96998 * 120.00036 * 180.02562 * 19 18 16 42 42 H 1.08996 * 113.77142 * 221.06121 * 24 15 14 43 43 H 1.08997 * 113.87328 * 89.67593 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5846 2.0042 0.8156 5 6 3.5841 1.4671 0.1266 6 6 3.9116 2.8384 -0.5245 7 6 2.8321 2.9457 -1.6229 8 1 3.2492 2.6403 -2.5825 9 6 2.3303 4.3641 -1.7098 10 8 1.2086 4.6345 -1.3364 11 7 3.1282 5.3322 -2.2024 12 6 4.4441 4.9898 -2.7478 13 6 2.6797 6.7267 -2.1925 14 6 3.1194 7.5281 -3.4312 15 7 3.4168 8.6262 -2.4910 16 6 3.4967 9.9888 -2.6013 17 1 3.7384 10.5873 -1.7355 18 6 3.2670 10.6006 -3.8260 19 7 2.9720 9.8712 -4.8810 20 14 3.3768 12.4593 -3.9766 21 1 4.7425 12.9065 -3.6025 22 1 3.0903 12.8603 -5.3774 23 1 2.3839 13.0889 -3.0692 24 6 3.5933 7.6660 -1.3843 25 8 1.7570 2.0714 -1.2601 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.0372 0.6485 -0.4326 32 1 3.8937 1.4443 1.1715 33 1 4.9102 2.8319 -0.9614 34 1 3.8093 3.6462 0.2002 35 1 4.3372 4.6806 -3.7875 36 1 5.0978 5.8603 -2.6930 37 1 4.8764 4.1738 -2.1687 38 1 1.6214 6.8310 -1.9533 39 1 4.0018 7.1226 -3.9263 40 1 2.3064 7.7497 -4.1225 41 1 2.8119 10.2987 -5.7369 42 1 3.1586 7.9976 -0.4414 43 1 4.6143 7.3000 -1.2764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042831269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:37 Heat of formation + Delta-G solvation = -23.361163 kcal Electronic energy + Delta-G solvation = -22911.078128 eV Core-core repulsion = 19572.397902 eV Total energy + Delta-G solvation = -3338.680226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52682 -38.95868 -37.32585 -34.56647 -33.75341 -32.37324 -31.86042 -29.03693 -27.50753 -26.66924 -24.81181 -24.62524 -22.88885 -22.03132 -21.19614 -19.72721 -18.49328 -17.66302 -16.83432 -16.40117 -16.19557 -15.72761 -15.12357 -14.69344 -14.16586 -14.15208 -13.85193 -13.57009 -13.45130 -13.14420 -12.85347 -12.49464 -12.24245 -12.05796 -11.89617 -11.77638 -11.64132 -11.49407 -11.29896 -11.22612 -11.04899 -10.89233 -10.78741 -10.71489 -10.24189 -10.15664 -10.07830 -9.56733 -9.04479 -8.81479 -8.12194 -6.92623 -5.79716 -3.12898 2.80406 3.11628 3.39328 3.43173 3.44509 3.76450 4.19904 4.39947 4.44437 4.55136 4.80764 4.90430 4.94991 5.04886 5.14219 5.20360 5.25521 5.31416 5.44811 5.46803 5.49413 5.54451 5.58762 5.67640 5.75537 5.77670 5.82350 5.87304 6.01525 6.08579 6.16490 6.17971 6.41766 6.56415 6.77001 6.86788 7.18837 7.34857 7.51450 7.77094 7.94400 8.48893 9.01217 9.67235 10.54304 11.37338 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.044372 B = 0.003290 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.875317 B = 8508.545257 C = 8691.649295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.076 3.924 4 H 0.072 0.928 5 C -0.150 4.150 6 C -0.145 4.145 7 C 0.067 3.933 8 H 0.102 0.898 9 C 0.498 3.502 10 O -0.529 6.529 11 N -0.598 5.598 12 C 0.071 3.929 13 C 0.091 3.909 14 C 0.157 3.843 15 N -0.606 5.606 16 C -0.225 4.225 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.920 5.920 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.108 3.892 25 O -0.347 6.347 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.032 0.968 40 H 0.077 0.923 41 H 0.255 0.745 42 H 0.046 0.954 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.717 -20.280 8.422 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.019 3.981 4 H 0.090 0.910 5 C -0.188 4.188 6 C -0.182 4.182 7 C 0.005 3.995 8 H 0.120 0.880 9 C 0.285 3.715 10 O -0.405 6.405 11 N -0.333 5.333 12 C -0.072 4.072 13 C -0.013 4.013 14 C 0.031 3.969 15 N -0.332 5.332 16 C -0.352 4.352 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.567 5.567 20 Si 0.745 3.255 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.019 4.019 25 O -0.265 6.265 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.893 -19.847 8.319 21.713 hybrid contribution 0.520 1.151 -0.157 1.273 sum 3.414 -18.696 8.162 20.683 Atomic orbital electron populations 1.21733 0.95157 1.01307 1.02707 1.21643 0.97032 0.94544 1.02425 1.23111 0.93940 0.93927 0.87153 0.90976 1.23327 0.96030 0.97250 1.02190 1.23121 0.98932 0.98534 0.97656 1.22639 0.87907 0.88930 0.99992 0.88013 1.20924 0.85683 0.87012 0.77926 1.90683 1.18974 1.82754 1.48038 1.48003 1.17352 1.07747 1.60192 1.21916 0.84804 1.01933 0.98565 1.24034 1.00143 0.76464 1.00649 1.22632 0.98197 0.84190 0.91886 1.45639 1.81511 1.00689 1.05367 1.18945 1.41738 0.79366 0.95176 0.90102 1.24808 1.01864 0.98179 0.95450 1.69803 1.53074 1.33936 0.99880 0.86163 0.77878 0.84643 0.76841 1.21144 1.21500 1.20984 1.22975 0.96260 0.89248 0.93414 1.88524 1.42075 1.58401 1.37495 0.92927 0.92792 0.91761 0.91207 0.90854 0.89979 0.89643 0.88870 0.89820 0.92446 0.89948 0.91709 0.86740 0.95018 0.90513 0.93470 0.93598 0.94756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.85 37.16 0.37 -1.03 16 2 C -0.12 -1.01 5.66 -26.73 -0.15 -1.16 16 3 C 0.08 0.80 3.40 -25.70 -0.09 0.71 16 4 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.15 -1.17 6.57 -24.48 -0.16 -1.33 16 6 C -0.14 -1.34 5.54 -24.79 -0.14 -1.47 16 7 C 0.07 0.84 3.08 -27.16 -0.08 0.76 16 8 H 0.10 1.09 7.71 -51.93 -0.40 0.69 16 9 C 0.50 8.44 6.87 -10.98 -0.08 8.37 16 10 O -0.53 -11.31 16.03 -13.97 -0.22 -11.54 16 11 N -0.60 -9.85 3.09 -175.74 -0.54 -10.39 16 12 C 0.07 0.89 8.65 59.85 0.52 1.40 16 13 C 0.09 1.85 4.41 -70.14 -0.31 1.54 16 14 C 0.16 3.72 6.90 -2.97 -0.02 3.70 16 15 N -0.61 -15.67 3.70 -178.07 -0.66 -16.33 16 16 C -0.22 -6.35 10.70 -15.05 -0.16 -6.51 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -27.34 11.38 55.49 0.63 -26.71 16 20 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.11 2.26 8.44 -2.97 -0.03 2.24 16 25 O -0.35 -4.89 10.03 -54.76 -0.55 -5.44 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.72 7.99 -51.93 -0.42 0.30 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.64 6.76 -51.93 -0.35 0.29 16 34 H 0.08 0.87 7.84 -51.92 -0.41 0.46 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.12 6.15 -51.93 -0.32 0.80 16 37 H 0.06 0.59 4.76 -51.93 -0.25 0.34 16 38 H 0.11 2.59 7.22 -51.93 -0.38 2.21 16 39 H 0.03 0.73 6.58 -51.93 -0.34 0.39 16 40 H 0.08 2.06 7.15 -51.93 -0.37 1.68 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.03 0.67 7.06 -51.93 -0.37 0.30 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -34.07 339.25 -8.62 -42.69 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.94 Total: -1.48 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -0.42 Total: 6.93 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.57 Total: -53.44 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.77 Total: -16.98 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.07 -8.62 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042831269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.324 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds