Wall clock time and date at job start Tue Mar 31 2020 02:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47028 * 2 1 4 4 H 1.09005 * 109.98888 * 306.08160 * 3 2 1 5 5 C 1.54100 * 109.87946 * 185.00109 * 3 2 1 6 6 C 1.54808 * 104.30468 * 238.48296 * 5 3 2 7 7 C 1.55228 * 101.98787 * 339.25470 * 6 5 3 8 8 H 1.09002 * 110.52568 * 278.38991 * 7 6 5 9 9 C 1.50697 * 110.78005 * 155.50237 * 7 6 5 10 10 O 1.21282 * 120.00216 * 253.39210 * 9 7 6 11 11 N 1.34774 * 119.99741 * 73.38460 * 9 7 6 12 12 C 1.46508 * 120.00037 * 185.03469 * 11 9 7 13 13 C 1.46498 * 120.00209 * 5.04381 * 11 9 7 14 14 C 1.53946 * 113.73917 * 218.73803 * 13 11 9 15 15 N 1.47819 * 86.03566 * 222.08113 * 14 13 11 16 16 C 1.36938 * 134.45438 * 204.64830 * 15 14 13 17 17 H 1.07997 * 119.99369 * 179.86496 * 16 15 14 18 18 C 1.38810 * 120.00068 * 359.86232 * 16 15 14 19 19 N 1.31616 * 120.00507 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99752 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47390 * 90.00032 * 20 18 16 22 22 H 1.48500 * 109.47021 * 210.00169 * 20 18 16 23 23 H 1.48503 * 109.47126 * 329.99583 * 20 18 16 24 24 C 1.47582 * 91.04900 * 24.55009 * 15 14 13 25 25 O 1.43742 * 109.87883 * 67.16588 * 3 2 1 26 26 H 1.08994 * 109.47009 * 300.00169 * 1 2 3 27 27 H 1.09005 * 109.46974 * 59.99990 * 1 2 3 28 28 H 1.09003 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47028 * 240.00118 * 2 1 3 30 30 H 1.08998 * 109.46622 * 119.99885 * 2 1 3 31 31 H 1.09008 * 110.48393 * 357.22191 * 5 3 2 32 32 H 1.08994 * 110.49068 * 119.73528 * 5 3 2 33 33 H 1.08998 * 110.91213 * 97.37716 * 6 5 3 34 34 H 1.09004 * 110.90674 * 220.98711 * 6 5 3 35 35 H 1.09002 * 109.46396 * 86.55787 * 12 11 9 36 36 H 1.08996 * 109.46918 * 206.56209 * 12 11 9 37 37 H 1.09006 * 109.46813 * 326.56186 * 12 11 9 38 38 H 1.09001 * 112.94034 * 350.32322 * 13 11 9 39 39 H 1.09000 * 113.77252 * 336.34663 * 14 13 11 40 40 H 1.08995 * 113.77007 * 107.74374 * 14 13 11 41 41 H 0.96997 * 120.00660 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.76427 * 221.15659 * 24 15 14 43 43 H 1.08994 * 113.77057 * 89.75743 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9949 -0.8279 5 6 3.5758 1.4553 -0.1263 6 6 4.0574 2.2052 1.1395 7 6 2.7842 2.9910 1.5528 8 1 2.6915 3.9047 0.9657 9 6 2.8065 3.3086 3.0258 10 8 2.0782 2.7076 3.7869 11 7 3.6360 4.2605 3.4973 12 6 3.7387 4.4934 4.9401 13 6 4.4348 5.0623 2.5672 14 6 5.8594 5.3584 3.0698 15 7 5.6465 6.7272 2.5538 16 6 6.4747 7.7307 2.1268 17 1 6.0574 8.6664 1.7851 18 6 7.8503 7.5454 2.1332 19 7 8.3588 6.4049 2.5492 20 14 8.9799 8.9147 1.5514 21 1 9.3411 9.7810 2.7021 22 1 10.2126 8.3257 0.9692 23 1 8.2842 9.7257 0.5202 24 6 4.1839 6.5769 2.6812 25 8 1.7084 2.0781 1.2458 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9661 0.4376 -0.1385 32 1 3.8802 1.9904 -1.0258 33 1 4.3511 1.5028 1.9196 34 1 4.8760 2.8845 0.9013 35 1 4.4808 3.8176 5.3652 36 1 4.0407 5.5250 5.1209 37 1 2.7710 4.3108 5.4074 38 1 4.3994 4.6873 1.5443 39 1 5.9621 5.3086 4.1538 40 1 6.6356 4.8045 2.5419 41 1 9.3201 6.2752 2.5534 42 1 3.6249 6.9938 1.8434 43 1 3.7933 6.8858 3.6507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042831271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:41 Heat of formation + Delta-G solvation = -24.321352 kcal Electronic energy + Delta-G solvation = -23184.033176 eV Core-core repulsion = 19845.311313 eV Total energy + Delta-G solvation = -3338.721863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.43232 -38.93912 -37.63631 -34.19626 -33.69307 -32.17212 -31.92550 -29.30414 -27.67204 -26.55899 -24.94683 -24.04529 -23.18934 -21.99305 -20.99065 -20.02358 -18.58918 -17.42584 -16.83860 -16.42757 -16.05696 -15.40537 -15.09333 -14.74262 -14.63138 -13.91931 -13.67056 -13.61187 -13.52883 -13.13964 -12.95477 -12.46414 -12.07399 -11.88782 -11.81793 -11.71673 -11.62885 -11.51001 -11.39333 -11.13278 -10.95053 -10.88792 -10.80197 -10.63061 -10.41861 -10.14721 -9.82321 -9.66256 -9.31671 -8.89862 -8.19766 -7.02003 -5.88219 -3.21637 2.77307 3.02716 3.33176 3.38472 3.40103 3.93210 4.34140 4.43327 4.52748 4.74191 4.82900 5.01243 5.06758 5.08105 5.16761 5.21386 5.29601 5.41133 5.44029 5.55238 5.60782 5.70040 5.71393 5.74483 5.81658 5.86397 5.94092 5.98181 5.99546 6.08246 6.14569 6.22219 6.34449 6.42532 6.71254 6.91198 7.04567 7.10128 7.39610 7.72075 7.85151 8.42094 8.92771 9.59047 10.44380 11.28790 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.004079 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.831913 B = 6863.074973 C = 7521.988414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.073 3.927 4 H 0.070 0.930 5 C -0.151 4.151 6 C -0.142 4.142 7 C 0.060 3.940 8 H 0.094 0.906 9 C 0.520 3.480 10 O -0.535 6.535 11 N -0.596 5.596 12 C 0.088 3.912 13 C 0.075 3.925 14 C 0.158 3.842 15 N -0.606 5.606 16 C -0.225 4.225 17 H 0.082 0.918 18 C -0.005 4.005 19 N -0.920 5.920 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.107 3.893 25 O -0.344 6.344 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.255 0.745 42 H 0.048 0.952 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 -9.982 -4.770 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.015 3.985 4 H 0.088 0.912 5 C -0.188 4.188 6 C -0.180 4.180 7 C -0.001 4.001 8 H 0.111 0.889 9 C 0.307 3.693 10 O -0.412 6.412 11 N -0.329 5.329 12 C -0.054 4.054 13 C -0.029 4.029 14 C 0.032 3.968 15 N -0.333 5.333 16 C -0.353 4.353 17 H 0.100 0.900 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.020 4.020 25 O -0.263 6.263 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.128 0.872 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.325 -10.191 -4.316 15.136 hybrid contribution 0.993 0.955 -0.328 1.416 sum -9.333 -9.236 -4.644 13.928 Atomic orbital electron populations 1.21729 0.95357 1.01347 1.02360 1.21704 0.96835 0.94783 1.02488 1.22863 0.94261 0.94202 0.87212 0.91240 1.23014 0.95186 1.02006 0.98623 1.23151 0.97142 0.99721 0.97996 1.23011 0.88136 0.94852 0.94084 0.88863 1.20113 0.79919 0.79769 0.89522 1.90669 1.40719 1.50930 1.58834 1.47928 1.42051 1.35261 1.07705 1.21598 1.02034 1.02005 0.79752 1.24242 0.94357 0.90822 0.93483 1.22661 0.91250 0.85955 0.96950 1.45759 0.99713 1.13813 1.74027 1.18992 0.87039 0.93331 1.35901 0.90012 1.24792 0.96449 0.97565 1.01365 1.69796 1.11409 1.23524 1.51922 0.86100 0.80353 0.80880 0.78296 1.21541 1.21553 1.20528 1.22990 0.88223 0.92071 0.98728 1.88989 1.41421 1.56699 1.39148 0.91783 0.92987 0.92967 0.90934 0.91093 0.90067 0.90170 0.89992 0.88620 0.92723 0.90465 0.91193 0.87226 0.94691 0.90354 0.93480 0.93332 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.83 37.16 0.37 -1.10 16 2 C -0.12 -1.19 5.42 -26.73 -0.14 -1.33 16 3 C 0.07 0.81 3.41 -26.16 -0.09 0.73 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.15 -1.53 6.64 -25.20 -0.17 -1.69 16 6 C -0.14 -1.77 6.16 -24.60 -0.15 -1.92 16 7 C 0.06 0.87 2.72 -26.70 -0.07 0.80 16 8 H 0.09 1.24 7.24 -51.93 -0.38 0.86 16 9 C 0.52 8.93 7.05 -10.99 -0.08 8.85 16 10 O -0.53 -10.88 16.19 -13.38 -0.22 -11.09 16 11 N -0.60 -9.81 3.09 -175.73 -0.54 -10.35 16 12 C 0.09 1.36 9.09 59.85 0.54 1.90 16 13 C 0.08 1.31 4.02 -70.14 -0.28 1.03 16 14 C 0.16 3.42 6.94 -2.83 -0.02 3.40 16 15 N -0.61 -14.53 3.70 -177.87 -0.66 -15.19 16 16 C -0.23 -6.00 10.70 -15.06 -0.16 -6.16 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 18 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 19 N -0.92 -25.92 11.39 55.49 0.63 -25.29 16 20 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.11 2.05 8.44 -2.97 -0.03 2.03 16 25 O -0.34 -5.20 10.13 -54.17 -0.55 -5.75 16 26 H 0.06 0.74 7.91 -51.93 -0.41 0.33 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.73 7.70 -51.92 -0.40 0.33 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 34 H 0.10 1.18 6.97 -51.93 -0.36 0.82 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.17 6.22 -51.93 -0.32 0.85 16 37 H 0.07 1.05 7.46 -51.93 -0.39 0.67 16 38 H 0.11 1.76 4.82 -51.93 -0.25 1.51 16 39 H 0.04 0.78 6.75 -51.93 -0.35 0.43 16 40 H 0.08 1.87 7.16 -51.93 -0.37 1.50 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.73 6.89 -51.93 -0.36 0.38 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -31.49 339.75 -8.55 -40.04 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.94 Total: -0.01 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -0.38 Total: 6.30 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.57 Total: -50.83 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.77 Total: -16.84 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.49 -8.55 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042831271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.720 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds