Wall clock time and date at job start Tue Mar 31 2020 02:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47250 * 2 1 4 4 H 1.09004 * 110.43451 * 52.73222 * 3 2 1 5 5 C 1.54807 * 110.49081 * 290.04291 * 3 2 1 6 6 C 1.55000 * 102.08896 * 220.44250 * 5 3 2 7 7 O 1.44570 * 103.58764 * 36.94322 * 6 5 3 8 8 C 1.43742 * 106.87249 * 320.11914 * 7 6 5 9 9 H 1.08995 * 109.88059 * 266.83211 * 8 7 6 10 10 C 1.50698 * 109.88392 * 145.82801 * 8 7 6 11 11 O 1.21290 * 119.99531 * 344.47221 * 10 8 7 12 12 N 1.34772 * 120.00450 * 164.47064 * 10 8 7 13 13 C 1.46502 * 119.99782 * 354.72311 * 12 10 8 14 14 C 1.46494 * 120.00272 * 174.71558 * 12 10 8 15 15 C 1.53496 * 114.20704 * 120.00042 * 14 12 10 16 16 N 1.47066 * 87.98334 * 87.52367 * 15 14 12 17 17 C 1.36939 * 136.05765 * 207.08732 * 16 15 14 18 18 H 1.08004 * 119.99621 * 5.68092 * 17 16 15 19 19 C 1.38807 * 120.00090 * 185.68590 * 17 16 15 20 20 N 1.31618 * 120.00161 * 354.99281 * 19 17 16 21 21 Si 1.86804 * 119.99840 * 174.72461 * 19 17 16 22 22 H 1.48501 * 109.47529 * 94.99482 * 21 19 17 23 23 H 1.48506 * 109.46698 * 214.99309 * 21 19 17 24 24 H 1.48498 * 109.47185 * 334.98598 * 21 19 17 25 25 C 1.47068 * 87.88835 * 27.34274 * 16 15 14 26 26 H 1.09000 * 109.46758 * 299.99883 * 1 2 3 27 27 H 1.09002 * 109.46658 * 59.99448 * 1 2 3 28 28 H 1.08988 * 109.46848 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46950 * 240.00872 * 2 1 3 30 30 H 1.08999 * 109.47288 * 119.99874 * 2 1 3 31 31 H 1.08995 * 110.90619 * 338.63413 * 5 3 2 32 32 H 1.08997 * 110.90894 * 102.23949 * 5 3 2 33 33 H 1.09005 * 110.61682 * 155.52196 * 6 5 3 34 34 H 1.08999 * 110.61444 * 278.36036 * 6 5 3 35 35 H 1.09003 * 109.46831 * 274.74897 * 13 12 10 36 36 H 1.08996 * 109.47542 * 34.74607 * 13 12 10 37 37 H 1.09003 * 109.46965 * 154.75264 * 13 12 10 38 38 H 1.09008 * 113.28477 * 346.93756 * 14 12 10 39 39 H 1.09005 * 113.46884 * 332.74205 * 15 14 12 40 40 H 1.09001 * 113.47176 * 202.30324 * 15 14 12 41 41 H 0.97004 * 119.99719 * 180.02562 * 20 19 17 42 42 H 1.09000 * 113.46277 * 87.43334 * 25 16 15 43 43 H 1.08999 * 113.46717 * 217.87977 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5838 2.0075 0.8129 5 6 1.7522 2.1191 -1.3623 6 6 3.0532 2.9257 -1.6056 7 8 4.0901 2.0624 -1.0864 8 6 3.5763 1.4715 0.1190 9 1 3.8700 2.0714 0.9803 10 6 4.1052 0.0682 0.2679 11 8 4.6099 -0.4934 -0.6813 12 7 4.0174 -0.5626 1.4556 13 6 3.5146 0.1540 2.6302 14 6 4.4247 -1.9650 1.5720 15 6 5.5638 -2.2086 2.5717 16 7 4.5438 -2.3349 3.6236 17 6 4.4924 -2.1311 4.9768 18 1 5.3407 -1.7040 5.4911 19 6 3.3502 -2.4735 5.6873 20 7 2.2817 -2.9015 5.0491 21 14 3.3322 -2.3340 7.5501 22 1 2.7546 -1.0235 7.9428 23 1 2.5075 -3.4294 8.1205 24 1 4.7201 -2.4384 8.0677 25 6 3.6050 -2.7825 2.5838 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.6050 1.3735 -2.1435 32 1 0.8903 2.7828 -1.2926 33 1 3.2002 3.1050 -2.6707 34 1 3.0284 3.8682 -1.0587 35 1 4.3331 0.6978 3.1020 36 1 2.7406 0.8574 2.3230 37 1 3.0960 -0.5598 3.3397 38 1 4.5637 -2.4548 0.6081 39 1 6.2182 -1.3468 2.7027 40 1 6.1134 -3.1316 2.3870 41 1 1.4834 -3.1404 5.5457 42 1 3.6384 -3.8568 2.4023 43 1 2.5906 -2.4096 2.7252 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042973279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:19 Heat of formation + Delta-G solvation = -9.751661 kcal Electronic energy + Delta-G solvation = -24086.262427 eV Core-core repulsion = 20748.172354 eV Total energy + Delta-G solvation = -3338.090073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69873 -38.92010 -37.26643 -34.95150 -33.75800 -32.14443 -30.37533 -29.36684 -27.80348 -26.13857 -24.60719 -24.16668 -23.15615 -22.58821 -21.04299 -19.62805 -18.12448 -17.10538 -16.72644 -16.37046 -16.11995 -15.22987 -14.95295 -14.80961 -14.39817 -14.27952 -13.72305 -13.50338 -13.39307 -12.79129 -12.64472 -12.50764 -12.35344 -12.05220 -11.72703 -11.60916 -11.32071 -11.25900 -11.11815 -10.97918 -10.91799 -10.69535 -10.65441 -10.52472 -10.10972 -9.97758 -9.89396 -9.46564 -9.17831 -8.83195 -7.93880 -6.94306 -5.86653 -3.17855 2.90117 3.22166 3.33093 3.40529 3.41490 4.05446 4.35410 4.39486 4.60307 4.69132 4.93754 5.09019 5.19475 5.22286 5.29492 5.40676 5.42917 5.44940 5.50898 5.57136 5.60837 5.73909 5.80219 5.82781 5.99297 6.11857 6.15795 6.16879 6.20215 6.26043 6.41183 6.48517 6.56262 6.68573 6.75985 6.96829 7.12019 7.28717 7.47973 7.86901 7.97231 8.60274 8.95811 9.61630 10.56385 11.30621 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023120 B = 0.005112 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.771488 B = 5475.911457 C = 5875.650673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.147 4.147 6 C 0.044 3.956 7 O -0.350 6.350 8 C 0.063 3.937 9 H 0.089 0.911 10 C 0.519 3.481 11 O -0.536 6.536 12 N -0.575 5.575 13 C 0.073 3.927 14 C 0.084 3.916 15 C 0.104 3.896 16 N -0.607 5.607 17 C -0.216 4.216 18 H 0.081 0.919 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.148 3.852 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.254 0.746 42 H 0.038 0.962 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 10.209 -10.059 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.126 4.126 4 H 0.110 0.890 5 C -0.185 4.185 6 C -0.033 4.033 7 O -0.268 6.268 8 C 0.002 3.998 9 H 0.106 0.894 10 C 0.306 3.694 11 O -0.413 6.413 12 N -0.307 5.307 13 C -0.070 4.070 14 C -0.021 4.021 15 C -0.023 4.023 16 N -0.333 5.333 17 C -0.343 4.343 18 H 0.098 0.902 19 C -0.202 4.202 20 N -0.565 5.565 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.022 3.978 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.138 0.862 38 H 0.115 0.885 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.291 9.870 -10.297 14.638 hybrid contribution -0.178 -0.003 1.363 1.375 sum -3.468 9.867 -8.934 13.755 Atomic orbital electron populations 1.21713 0.95287 1.01947 1.01316 1.21928 0.96544 0.94630 1.04187 1.22509 0.92945 0.98546 0.98584 0.89016 1.23224 0.98311 0.99756 0.97174 1.23620 0.86519 0.93225 0.99916 1.89018 1.37505 1.60958 1.39323 1.22749 0.93974 0.93195 0.89887 0.89357 1.20174 0.78940 0.87408 0.82858 1.90657 1.44265 1.67307 1.39093 1.47311 1.63112 1.11609 1.08676 1.22037 0.98155 0.98135 0.88655 1.22714 0.99072 0.81604 0.98709 1.22854 0.93115 0.98204 0.88175 1.45737 1.07648 1.77079 1.02855 1.18907 1.00103 1.34916 0.80394 0.90170 1.24777 0.96321 1.01259 0.97816 1.69826 1.02711 1.49896 1.34022 0.86177 0.77412 0.77257 0.85390 1.21594 1.21654 1.20675 1.22479 0.96468 0.95095 0.83779 0.92652 0.93150 0.92430 0.91406 0.89474 0.90088 0.90024 0.88845 0.92075 0.93293 0.93126 0.86213 0.88462 0.94009 0.93996 0.93563 0.94394 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.79 37.16 0.36 -1.29 16 2 C -0.14 -1.83 4.06 -26.73 -0.11 -1.94 16 3 C -0.11 -1.28 2.09 -89.09 -0.19 -1.47 16 4 H 0.09 0.95 7.90 -51.93 -0.41 0.54 16 5 C -0.15 -1.47 6.02 -24.72 -0.15 -1.62 16 6 C 0.04 0.47 7.72 38.21 0.29 0.76 16 7 O -0.35 -5.44 10.80 -54.29 -0.59 -6.03 16 8 C 0.06 0.93 2.94 -27.31 -0.08 0.85 16 9 H 0.09 1.18 7.29 -51.93 -0.38 0.80 16 10 C 0.52 9.41 5.02 -10.99 -0.06 9.36 16 11 O -0.54 -11.51 16.14 -13.51 -0.22 -11.73 16 12 N -0.57 -10.44 2.07 -173.55 -0.36 -10.80 16 13 C 0.07 1.26 8.17 59.85 0.49 1.75 16 14 C 0.08 1.65 4.66 -67.68 -0.32 1.33 16 15 C 0.10 2.16 8.31 -8.50 -0.07 2.09 16 16 N -0.61 -14.54 2.47 -184.59 -0.46 -15.00 16 17 C -0.22 -5.64 10.19 -15.06 -0.15 -5.79 16 18 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 19 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 20 N -0.92 -25.31 11.59 55.49 0.64 -24.66 16 21 Si 0.91 21.03 29.56 -169.99 -5.02 16.01 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.15 3.30 6.36 -8.36 -0.05 3.25 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.49 7.61 -51.93 -0.40 0.10 16 28 H 0.06 0.67 8.14 -51.94 -0.42 0.25 16 29 H 0.07 1.03 7.69 -51.93 -0.40 0.63 16 30 H 0.09 1.37 5.01 -51.93 -0.26 1.11 16 31 H 0.08 0.86 7.77 -51.93 -0.40 0.46 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.73 5.36 -51.93 -0.28 0.45 16 37 H 0.12 2.55 5.10 -51.93 -0.26 2.29 16 38 H 0.10 1.89 7.33 -51.92 -0.38 1.51 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.80 6.47 -51.93 -0.34 1.46 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -30.50 331.72 -7.98 -38.48 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.86 Total: 1.68 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -0.12 Total: 7.05 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.17 Total: -50.46 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.80 Total: -17.76 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.50 -7.98 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042973279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.725 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds