Wall clock time and date at job start Tue Mar 31 2020 02:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.41899 * 2 1 4 4 O 1.44426 * 110.37395 * 237.69820 * 2 1 3 5 5 C 1.44426 * 105.27664 * 200.65544 * 4 2 1 6 6 C 1.54482 * 104.79963 * 40.50864 * 5 4 2 7 7 C 1.54472 * 110.37503 * 122.31183 * 2 1 3 8 8 C 1.52994 * 110.51636 * 261.45683 * 7 2 1 9 9 C 1.50698 * 110.62763 * 24.10977 * 7 2 1 10 10 O 1.21290 * 120.00058 * 1.52304 * 9 7 2 11 11 N 1.34782 * 120.00165 * 181.52263 * 9 7 2 12 12 C 1.46491 * 120.00121 * 0.02562 * 11 9 7 13 13 C 1.46500 * 119.99703 * 179.97438 * 11 9 7 14 14 C 1.53939 * 113.74133 * 216.67301 * 13 11 9 15 15 N 1.47580 * 86.12149 * 222.05225 * 14 13 11 16 16 C 1.36939 * 134.49308 * 204.64327 * 15 14 13 17 17 H 1.08000 * 119.99848 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00021 * 359.97438 * 16 15 14 19 19 N 1.31616 * 120.00185 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99690 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47393 * 359.97438 * 20 18 16 22 22 H 1.48509 * 109.47145 * 120.00010 * 20 18 16 23 23 H 1.48501 * 109.47280 * 239.99674 * 20 18 16 24 24 C 1.47582 * 91.01152 * 24.64303 * 15 14 13 25 25 H 1.08996 * 109.47295 * 276.71684 * 1 2 3 26 26 H 1.09000 * 109.47624 * 36.72023 * 1 2 3 27 27 H 1.09005 * 109.46947 * 156.71819 * 1 2 3 28 28 H 1.08997 * 110.37074 * 281.67564 * 5 4 2 29 29 H 1.09001 * 110.37280 * 159.33783 * 5 4 2 30 30 H 1.09006 * 110.50714 * 217.37796 * 6 5 4 31 31 H 1.09002 * 110.51225 * 94.66996 * 6 5 4 32 32 H 1.09003 * 109.47102 * 303.90670 * 8 7 2 33 33 H 1.09006 * 109.46996 * 63.89851 * 8 7 2 34 34 H 1.08999 * 109.48019 * 183.90347 * 8 7 2 35 35 H 1.09001 * 109.47369 * 89.99773 * 12 11 9 36 36 H 1.09002 * 109.47716 * 210.00238 * 12 11 9 37 37 H 1.09002 * 109.47079 * 329.99866 * 12 11 9 38 38 H 1.08999 * 112.95162 * 348.41324 * 13 11 9 39 39 H 1.09007 * 113.76955 * 336.35612 * 14 13 11 40 40 H 1.08999 * 113.77066 * 107.74736 * 14 13 11 41 41 H 0.97003 * 120.00116 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.76422 * 221.06007 * 24 15 14 43 43 H 1.08993 * 113.87495 * 89.67655 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 8 2.0328 -0.7235 -1.1444 5 6 3.3874 -1.0870 -0.7997 6 6 3.3177 -1.5057 0.6857 7 6 2.0678 -0.7740 1.2238 8 6 2.4540 0.1945 2.3435 9 6 1.0458 -1.7665 1.7153 10 8 -0.0134 -1.8835 1.1361 11 7 1.3088 -2.5243 2.7985 12 6 2.5879 -2.3827 3.4984 13 6 0.3151 -3.4887 3.2765 14 6 0.2560 -3.6092 4.8100 15 7 0.1471 -5.0647 4.5912 16 6 -0.3681 -6.1078 5.3135 17 1 -0.3226 -7.1122 4.9190 18 6 -0.9487 -5.8743 6.5525 19 7 -1.0036 -4.6504 7.0334 20 14 -1.6508 -7.2975 7.5379 21 1 -1.4650 -8.5622 6.7822 22 1 -0.9467 -7.3915 8.8421 23 1 -3.0994 -7.0700 7.7728 24 6 0.8165 -4.9443 3.2815 25 1 -0.3634 0.1202 1.0206 26 1 -0.3634 0.8237 -0.6144 27 1 -0.3633 -0.9440 -0.4062 28 1 4.0525 -0.2322 -0.9222 29 1 3.7242 -1.9221 -1.4139 30 1 4.2109 -1.1772 1.2173 31 1 3.1955 -2.5853 0.7729 32 1 3.1775 0.9169 1.9655 33 1 1.5648 0.7195 2.6925 34 1 2.8949 -0.3627 3.1700 35 1 2.4943 -1.6255 4.2769 36 1 2.8626 -3.3360 3.9499 37 1 3.3588 -2.0812 2.7891 38 1 -0.6603 -3.3622 2.8067 39 1 1.1765 -3.3078 5.3102 40 1 -0.6351 -3.1635 5.2518 41 1 -1.4090 -4.4873 7.8994 42 1 0.3726 -5.5645 2.5027 43 1 1.9015 -5.0350 3.3305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043445139.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:52 Heat of formation + Delta-G solvation = 7.785827 kcal Electronic energy + Delta-G solvation = -23814.184040 eV Core-core repulsion = 20476.854449 eV Total energy + Delta-G solvation = -3337.329591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12156 -38.83308 -37.37927 -35.12108 -33.45171 -31.94133 -31.26658 -28.34850 -27.61027 -26.96801 -24.89922 -24.82727 -23.51511 -22.23696 -21.65910 -19.31375 -18.58394 -17.00618 -16.69463 -16.18045 -15.84615 -15.60688 -15.24490 -14.93649 -14.59602 -14.05859 -13.82968 -13.76496 -13.35518 -12.91150 -12.69851 -12.46324 -12.10698 -12.05305 -11.82580 -11.78385 -11.53570 -11.35243 -11.22448 -11.11882 -11.04406 -10.88291 -10.73438 -10.57840 -10.21501 -10.04037 -9.85771 -9.58786 -8.84017 -8.82248 -8.11955 -6.94084 -5.81871 -3.14704 2.82855 3.22725 3.37450 3.42892 3.45075 3.78370 4.31358 4.34990 4.44708 4.64357 4.84461 4.87020 5.05900 5.18145 5.28402 5.32464 5.37912 5.41488 5.44892 5.47120 5.48771 5.58344 5.69170 5.71249 5.74762 5.85467 5.94202 6.03146 6.08738 6.12080 6.18070 6.41303 6.55364 6.61176 6.77397 6.93162 7.16411 7.31971 7.49347 7.77163 7.92648 8.49323 8.99713 9.65601 10.52509 11.35425 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036531 B = 0.003970 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.281182 B = 7050.992503 C = 7110.350303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.095 3.905 3 H 0.071 0.929 4 O -0.367 6.367 5 C 0.045 3.955 6 C -0.144 4.144 7 C -0.112 4.112 8 C -0.153 4.153 9 C 0.523 3.477 10 O -0.529 6.529 11 N -0.596 5.596 12 C 0.068 3.932 13 C 0.091 3.909 14 C 0.158 3.842 15 N -0.606 5.606 16 C -0.223 4.223 17 H 0.082 0.918 18 C -0.006 4.006 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.108 3.892 25 H 0.068 0.932 26 H 0.033 0.967 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.388 11.041 -11.086 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.037 3.963 3 H 0.089 0.911 4 O -0.286 6.286 5 C -0.032 4.032 6 C -0.182 4.182 7 C -0.116 4.116 8 C -0.210 4.210 9 C 0.311 3.689 10 O -0.406 6.406 11 N -0.328 5.328 12 C -0.075 4.075 13 C -0.012 4.012 14 C 0.031 3.969 15 N -0.332 5.332 16 C -0.350 4.350 17 H 0.100 0.900 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.744 3.256 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.216 1.216 24 C -0.019 4.019 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.531 10.749 -11.294 18.815 hybrid contribution 0.059 -0.738 1.034 1.272 sum 10.590 10.011 -10.259 17.822 Atomic orbital electron populations 1.22074 0.91628 1.02761 1.02286 1.22936 0.96812 0.93801 0.82736 0.91100 1.89200 1.26512 1.74653 1.38213 1.23371 0.85296 0.99832 0.94686 1.23102 0.96798 1.01710 0.96625 1.22169 0.95491 0.96103 0.97834 1.22189 1.02391 0.98672 0.97771 1.20241 0.87491 0.81198 0.79990 1.90739 1.26278 1.67779 1.55850 1.48038 1.17653 1.38826 1.28276 1.22111 0.85265 1.02900 0.97224 1.24021 0.92232 0.86960 0.98001 1.22613 1.00040 0.85085 0.89118 1.45662 1.66079 1.03930 1.17546 1.19047 1.30694 0.86792 0.98486 0.89999 1.24795 1.01251 0.96854 0.97403 1.69823 1.49211 1.18370 1.19358 0.86021 0.78561 0.81144 0.79876 1.20392 1.21698 1.21598 1.22968 0.95756 0.93552 0.89644 0.91295 0.94810 0.88646 0.92248 0.89052 0.89432 0.89949 0.91581 0.91661 0.89984 0.92236 0.90546 0.90984 0.86707 0.95134 0.90568 0.93601 0.93559 0.94817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 7.97 37.16 0.30 -1.55 16 2 C 0.10 1.18 3.37 -25.96 -0.09 1.09 16 3 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 4 O -0.37 -4.99 11.33 -35.23 -0.40 -5.39 16 5 C 0.05 0.44 7.63 37.94 0.29 0.73 16 6 C -0.14 -1.39 4.53 -25.16 -0.11 -1.50 16 7 C -0.11 -1.31 0.57 -154.10 -0.09 -1.40 16 8 C -0.15 -1.41 7.90 37.15 0.29 -1.12 16 9 C 0.52 8.22 5.89 -10.98 -0.06 8.15 16 10 O -0.53 -10.01 11.20 5.55 0.06 -9.95 16 11 N -0.60 -9.43 3.09 -175.74 -0.54 -9.97 16 12 C 0.07 0.84 7.19 59.84 0.43 1.27 16 13 C 0.09 1.81 4.40 -70.14 -0.31 1.50 16 14 C 0.16 3.65 6.93 -2.98 -0.02 3.63 16 15 N -0.61 -15.53 3.70 -178.08 -0.66 -16.19 16 16 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 19 N -0.92 -27.10 11.38 55.49 0.63 -26.46 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 C 0.11 2.25 8.46 -2.97 -0.03 2.23 16 25 H 0.07 1.02 6.80 -51.93 -0.35 0.67 16 26 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 1.61 6.29 -51.93 -0.33 1.29 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.61 7.31 -51.93 -0.38 0.23 16 31 H 0.08 0.89 7.45 -51.93 -0.39 0.51 16 32 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.71 4.22 -51.93 -0.22 0.49 16 35 H 0.06 0.69 7.03 -51.93 -0.37 0.32 16 36 H 0.08 1.03 6.36 -51.93 -0.33 0.70 16 37 H 0.07 0.68 3.98 -51.93 -0.21 0.48 16 38 H 0.12 2.50 7.24 -51.93 -0.38 2.12 16 39 H 0.03 0.69 6.71 -51.92 -0.35 0.35 16 40 H 0.08 2.00 7.16 -51.93 -0.37 1.62 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.03 0.66 6.98 -51.93 -0.36 0.30 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -32.53 322.97 -7.23 -39.76 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.51 Total: -0.04 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 0.34 Total: 6.34 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.57 Total: -52.62 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.34 Total: -15.34 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.53 -7.23 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043445139.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.547 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds