Wall clock time and date at job start Tue Mar 31 2020 02:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.98899 * 2 1 4 4 O 1.43742 * 109.88424 * 238.91131 * 2 1 3 5 5 C 1.44384 * 106.97405 * 214.06499 * 4 2 1 6 6 C 1.54996 * 103.49105 * 40.05733 * 5 4 2 7 7 C 1.54106 * 109.87748 * 121.07496 * 2 1 3 8 8 C 1.53003 * 110.48721 * 2.78663 * 7 2 1 9 9 C 1.50700 * 110.60373 * 240.19099 * 7 2 1 10 10 O 1.21278 * 119.99943 * 6.34556 * 9 7 2 11 11 N 1.34772 * 120.00012 * 186.35134 * 9 7 2 12 12 C 1.46500 * 119.99999 * 185.00651 * 11 9 7 13 13 C 1.46504 * 120.00141 * 4.99784 * 11 9 7 14 14 C 1.53946 * 113.74550 * 221.49961 * 13 11 9 15 15 N 1.47580 * 86.11656 * 222.05035 * 14 13 11 16 16 C 1.36934 * 134.49350 * 204.64319 * 15 14 13 17 17 H 1.08002 * 120.00617 * 184.36185 * 16 15 14 18 18 C 1.38815 * 119.99893 * 4.35485 * 16 15 14 19 19 N 1.31621 * 119.99776 * 5.87531 * 18 16 15 20 20 Si 1.86801 * 120.00140 * 185.87364 * 18 16 15 21 21 H 1.48497 * 109.47227 * 94.97758 * 20 18 16 22 22 H 1.48497 * 109.47064 * 214.98362 * 20 18 16 23 23 H 1.48503 * 109.47063 * 334.98256 * 20 18 16 24 24 C 1.47584 * 91.01750 * 24.64044 * 15 14 13 25 25 H 1.08992 * 109.47630 * 298.92060 * 1 2 3 26 26 H 1.09001 * 109.47171 * 58.92341 * 1 2 3 27 27 H 1.09006 * 109.46732 * 178.91544 * 1 2 3 28 28 H 1.09002 * 110.61494 * 281.55269 * 5 4 2 29 29 H 1.08998 * 110.61420 * 158.56138 * 5 4 2 30 30 H 1.09002 * 110.90041 * 204.77655 * 6 5 4 31 31 H 1.09000 * 110.93293 * 81.19136 * 6 5 4 32 32 H 1.08997 * 109.47144 * 180.95654 * 8 7 2 33 33 H 1.09005 * 109.46661 * 300.95062 * 8 7 2 34 34 H 1.08995 * 109.47280 * 60.94608 * 8 7 2 35 35 H 1.09004 * 109.47311 * 93.92306 * 12 11 9 36 36 H 1.08994 * 109.47015 * 213.91882 * 12 11 9 37 37 H 1.08998 * 109.47008 * 333.92342 * 12 11 9 38 38 H 1.08999 * 112.94314 * 353.23602 * 13 11 9 39 39 H 1.09000 * 113.76655 * 336.35219 * 14 13 11 40 40 H 1.08998 * 113.76455 * 107.75156 * 14 13 11 41 41 H 0.97002 * 119.99592 * 180.02562 * 19 18 16 42 42 H 1.08997 * 113.77215 * 221.06089 * 24 15 14 43 43 H 1.08995 * 113.87016 * 89.67345 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0189 -0.6980 -1.1576 5 6 3.2380 -1.3642 -0.7644 6 6 2.9195 -1.8913 0.6579 7 6 2.0539 -0.7480 1.2413 8 6 0.8897 -1.3189 2.0535 9 6 2.8937 0.1659 2.0960 10 8 2.9764 1.3448 1.8233 11 7 3.5529 -0.3267 3.1632 12 6 4.2796 0.5783 4.0571 13 6 3.5426 -1.7673 3.4296 14 6 3.3708 -2.1213 4.9180 15 7 4.4064 -3.1477 4.6901 16 6 4.7339 -4.3315 5.2953 17 1 5.6054 -4.8810 4.9711 18 6 3.9457 -4.8255 6.3258 19 7 2.8221 -4.2184 6.6439 20 14 4.4798 -6.3519 7.2609 21 1 5.2117 -5.9494 8.4887 22 1 3.2829 -7.1466 7.6360 23 1 5.3697 -7.1730 6.4011 24 6 4.9475 -2.3857 3.5478 25 1 -0.3634 0.4969 0.8994 26 1 -0.3633 0.5305 -0.8802 27 1 -0.3633 -1.0276 -0.0195 28 1 4.0686 -0.6588 -0.7354 29 1 3.4586 -2.1908 -1.4397 30 1 3.8332 -2.0222 1.2378 31 1 2.3542 -2.8221 0.6108 32 1 1.2776 -1.8291 2.9352 33 1 0.2309 -0.5077 2.3636 34 1 0.3313 -2.0262 1.4405 35 1 3.6362 0.8598 4.8908 36 1 5.1688 0.0762 4.4380 37 1 4.5744 1.4724 3.5077 38 1 2.8754 -2.3174 2.7661 39 1 3.6811 -1.3272 5.5970 40 1 2.3910 -2.5323 5.1614 41 1 2.2716 -4.5634 7.3642 42 1 5.2266 -3.0078 2.6974 43 1 5.7213 -1.6690 3.8226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043445142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:54 Heat of formation + Delta-G solvation = -7.608934 kcal Electronic energy + Delta-G solvation = -24119.182122 eV Core-core repulsion = 20781.184964 eV Total energy + Delta-G solvation = -3337.997158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.10764 -38.80318 -37.70309 -34.41991 -33.87820 -31.96992 -31.59706 -28.00351 -27.64905 -26.83972 -25.27573 -24.99060 -23.60112 -22.32309 -20.97797 -19.52049 -18.65170 -17.12830 -16.58529 -16.15850 -15.87402 -15.44763 -15.17248 -14.80938 -14.73944 -14.10236 -13.95823 -13.80961 -13.22579 -12.88952 -12.59708 -12.45428 -12.13588 -12.04831 -11.98903 -11.71699 -11.63181 -11.42405 -11.13933 -11.02360 -10.95614 -10.88320 -10.77908 -10.58765 -10.40214 -10.13257 -9.70375 -9.65164 -9.36670 -8.92252 -8.23724 -7.02675 -5.89283 -3.24315 2.74341 3.19002 3.32246 3.38059 3.39470 3.83925 4.31983 4.40628 4.56022 4.71933 4.88012 5.04045 5.11645 5.19554 5.26266 5.37787 5.40316 5.50605 5.54323 5.57097 5.68290 5.69074 5.75455 5.78267 5.81893 5.93559 5.95753 5.99837 6.03356 6.10975 6.17629 6.30705 6.32100 6.38336 6.75142 6.91390 7.00524 7.12072 7.39440 7.69717 7.85024 8.33597 8.90722 9.57502 10.42480 11.26249 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.004811 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.261093 B = 5818.554988 C = 6088.115386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.086 3.914 3 H 0.090 0.910 4 O -0.375 6.375 5 C 0.048 3.952 6 C -0.154 4.154 7 C -0.110 4.110 8 C -0.147 4.147 9 C 0.527 3.473 10 O -0.552 6.552 11 N -0.594 5.594 12 C 0.084 3.916 13 C 0.067 3.933 14 C 0.148 3.852 15 N -0.603 5.603 16 C -0.226 4.226 17 H 0.082 0.918 18 C -0.004 4.004 19 N -0.917 5.917 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.106 3.894 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.031 0.969 40 H 0.086 0.914 41 H 0.255 0.745 42 H 0.048 0.952 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 6.391 -10.593 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.028 3.972 3 H 0.108 0.892 4 O -0.294 6.294 5 C -0.029 4.029 6 C -0.192 4.192 7 C -0.113 4.113 8 C -0.204 4.204 9 C 0.314 3.686 10 O -0.430 6.430 11 N -0.325 5.325 12 C -0.058 4.058 13 C -0.036 4.036 14 C 0.022 3.978 15 N -0.330 5.330 16 C -0.353 4.353 17 H 0.099 0.901 18 C -0.201 4.201 19 N -0.564 5.564 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.022 4.022 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.143 0.857 39 H 0.048 0.952 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.229 6.728 -10.685 12.822 hybrid contribution 0.557 -0.852 1.044 1.458 sum -1.673 5.876 -9.641 11.414 Atomic orbital electron populations 1.22014 0.93594 1.02789 1.02235 1.22757 0.95103 0.96668 0.82692 0.89196 1.88844 1.39575 1.67880 1.33096 1.23530 0.87879 0.96318 0.95136 1.23574 1.01062 0.97911 0.96630 1.22047 0.96796 0.95973 0.96507 1.22164 0.96381 1.01445 1.00372 1.20232 0.79442 0.88099 0.80777 1.90620 1.64076 1.17223 1.71116 1.47935 1.50149 1.08544 1.25872 1.21628 0.96722 0.93960 0.93537 1.24578 0.99659 0.77998 1.01415 1.22738 0.96306 0.89466 0.89294 1.45611 1.34742 1.19023 1.33603 1.18985 1.08207 0.94870 1.13260 0.90054 1.24789 0.96701 0.99213 0.99396 1.69805 1.13068 1.41504 1.31997 0.86087 0.77527 0.82070 0.79994 1.21572 1.21578 1.20457 1.23018 0.94056 0.93335 0.91747 0.90994 0.92170 0.91567 0.92263 0.88712 0.88658 0.88998 0.90338 0.91523 0.90845 0.92642 0.90894 0.90820 0.85684 0.95180 0.89638 0.93478 0.93425 0.94352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.40 37.16 0.31 -1.38 16 2 C 0.09 1.17 3.66 -26.16 -0.10 1.07 16 3 H 0.09 1.39 6.48 -51.93 -0.34 1.06 16 4 O -0.37 -5.27 11.19 -35.23 -0.39 -5.67 16 5 C 0.05 0.58 7.72 38.21 0.29 0.88 16 6 C -0.15 -1.95 4.70 -24.73 -0.12 -2.07 16 7 C -0.11 -1.51 0.62 -154.13 -0.10 -1.60 16 8 C -0.15 -1.87 6.95 37.16 0.26 -1.61 16 9 C 0.53 8.47 6.48 -10.99 -0.07 8.40 16 10 O -0.55 -10.15 14.79 5.56 0.08 -10.07 16 11 N -0.59 -9.47 3.09 -175.74 -0.54 -10.01 16 12 C 0.08 1.25 9.12 59.85 0.55 1.80 16 13 C 0.07 1.16 1.86 -70.14 -0.13 1.03 16 14 C 0.15 3.20 7.23 -2.97 -0.02 3.18 16 15 N -0.60 -14.32 3.69 -178.09 -0.66 -14.97 16 16 C -0.23 -5.97 10.69 -15.06 -0.16 -6.13 16 17 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 18 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 19 N -0.92 -25.74 11.30 55.49 0.63 -25.12 16 20 Si 0.91 21.18 29.56 -169.99 -5.02 16.16 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 24 C 0.11 1.98 8.06 -2.97 -0.02 1.96 16 25 H 0.07 0.77 6.81 -51.93 -0.35 0.41 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.70 6.74 -51.93 -0.35 0.35 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.27 5.12 -51.93 -0.27 1.01 16 31 H 0.09 1.09 7.83 -51.93 -0.41 0.68 16 32 H 0.08 1.13 5.47 -51.93 -0.28 0.84 16 33 H 0.07 0.81 6.66 -51.93 -0.35 0.46 16 34 H 0.07 0.83 6.84 -51.93 -0.36 0.47 16 35 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.07 1.07 6.45 -51.93 -0.34 0.73 16 37 H 0.07 1.07 7.25 -51.93 -0.38 0.69 16 38 H 0.13 2.06 3.48 -51.93 -0.18 1.88 16 39 H 0.03 0.66 7.00 -51.93 -0.36 0.30 16 40 H 0.09 2.07 6.87 -51.93 -0.36 1.71 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 43 H 0.04 0.71 6.61 -51.93 -0.34 0.36 16 LS Contribution 321.99 15.07 4.85 4.85 Total: -1.00 -30.24 321.99 -6.75 -36.99 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.29 Total: 2.53 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 0.60 Total: 5.31 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.57 Total: -50.10 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.31 Total: -15.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.24 -6.75 -36.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043445142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.377 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds