Wall clock time and date at job start Tue Mar 31 2020 02:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.98652 * 2 1 4 4 O 1.43747 * 109.87426 * 121.07862 * 2 1 3 5 5 C 1.44383 * 106.96849 * 145.94348 * 4 2 1 6 6 C 1.54999 * 103.49253 * 319.93439 * 5 4 2 7 7 C 1.54093 * 109.88125 * 238.91479 * 2 1 3 8 8 C 1.52998 * 110.48824 * 357.35101 * 7 2 1 9 9 C 1.50701 * 110.48976 * 119.86896 * 7 2 1 10 10 O 1.21278 * 119.99815 * 354.41086 * 9 7 2 11 11 N 1.34772 * 120.00051 * 174.40464 * 9 7 2 12 12 C 1.46505 * 120.00122 * 184.48607 * 11 9 7 13 13 C 1.46505 * 120.00020 * 4.49486 * 11 9 7 14 14 C 1.53493 * 114.20772 * 118.38492 * 13 11 9 15 15 N 1.47068 * 87.98577 * 87.51795 * 14 13 11 16 16 C 1.36941 * 136.06128 * 207.08527 * 15 14 13 17 17 H 1.08002 * 119.99259 * 9.49782 * 16 15 14 18 18 C 1.38809 * 120.00230 * 189.50096 * 16 15 14 19 19 N 1.31616 * 119.99955 * 193.73718 * 18 16 15 20 20 Si 1.86800 * 120.00063 * 14.00913 * 18 16 15 21 21 H 1.48496 * 109.47261 * 269.72761 * 20 18 16 22 22 H 1.48501 * 109.46971 * 29.72989 * 20 18 16 23 23 H 1.48495 * 109.46871 * 149.72501 * 20 18 16 24 24 C 1.47068 * 87.88455 * 27.34050 * 15 14 13 25 25 H 1.09006 * 109.46790 * 181.08398 * 1 2 3 26 26 H 1.08999 * 109.47532 * 301.08386 * 1 2 3 27 27 H 1.09000 * 109.47197 * 61.08660 * 1 2 3 28 28 H 1.08995 * 110.62162 * 78.44091 * 5 4 2 29 29 H 1.09001 * 110.61481 * 201.28091 * 5 4 2 30 30 H 1.08996 * 110.91250 * 278.83397 * 6 5 4 31 31 H 1.08997 * 110.90485 * 155.22001 * 6 5 4 32 32 H 1.09005 * 109.47474 * 181.36190 * 8 7 2 33 33 H 1.08993 * 109.47700 * 301.36662 * 8 7 2 34 34 H 1.09006 * 109.47046 * 61.36638 * 8 7 2 35 35 H 1.08999 * 109.47282 * 271.46233 * 12 11 9 36 36 H 1.09004 * 109.46642 * 31.45669 * 12 11 9 37 37 H 1.08993 * 109.46842 * 151.45920 * 12 11 9 38 38 H 1.08997 * 113.28231 * 345.31401 * 13 11 9 39 39 H 1.08997 * 113.46741 * 332.73914 * 14 13 11 40 40 H 1.09001 * 113.52039 * 202.30199 * 14 13 11 41 41 H 0.97008 * 120.00181 * 355.17997 * 19 18 16 42 42 H 1.08998 * 113.46571 * 87.44043 * 24 15 14 43 43 H 1.09001 * 113.46547 * 217.87489 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0187 -0.6978 1.1578 5 6 3.2379 -1.3640 0.7649 6 6 2.9196 -1.8915 -0.6574 7 6 2.0540 -0.7482 -1.2410 8 6 0.8898 -1.3163 -2.0550 9 6 2.8946 0.1675 -2.0931 10 8 2.9877 1.3431 -1.8103 11 7 3.5428 -0.3201 -3.1694 12 6 4.4376 0.5467 -3.9405 13 6 3.3526 -1.7169 -3.5685 14 6 2.7478 -1.8948 -4.9679 15 7 4.1146 -1.8434 -5.5085 16 6 4.6928 -1.4765 -6.6944 17 1 4.1046 -0.9773 -7.4502 18 6 6.0348 -1.7462 -6.9250 19 7 6.6593 -1.1675 -7.9287 20 14 6.9524 -2.9362 -5.8153 21 1 7.5588 -2.1903 -4.6835 22 1 6.0058 -3.9518 -5.2884 23 1 8.0221 -3.6125 -6.5921 24 6 4.5865 -2.3655 -4.2172 25 1 -0.3633 -1.0276 0.0194 26 1 -0.3634 0.5306 0.8801 27 1 -0.3633 0.4969 -0.8996 28 1 4.0684 -0.6587 0.7358 29 1 3.4599 -2.1889 1.4419 30 1 2.3540 -2.8220 -0.6097 31 1 3.8333 -2.0223 -1.2372 32 1 1.2794 -1.8619 -2.9145 33 1 0.3052 -1.9917 -1.4306 34 1 0.2553 -0.4999 -2.4002 35 1 3.8678 1.0598 -4.7152 36 1 4.8922 1.2820 -3.2765 37 1 5.2183 -0.0569 -4.4032 38 1 2.8805 -2.3249 -2.7968 39 1 2.1252 -1.0569 -5.2815 40 1 2.2602 -2.8591 -5.1117 41 1 6.1662 -0.6076 -8.5487 42 1 4.5840 -3.4541 -4.1621 43 1 5.5304 -1.9287 -3.8912 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043445144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:56 Heat of formation + Delta-G solvation = 3.482359 kcal Electronic energy + Delta-G solvation = -24382.089305 eV Core-core repulsion = 21044.573102 eV Total energy + Delta-G solvation = -3337.516203 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23749 -39.20476 -37.88793 -34.46273 -33.79687 -32.30567 -31.67063 -28.47215 -27.78672 -26.63363 -25.61408 -25.13268 -23.32723 -22.28600 -21.06654 -19.95595 -18.59294 -17.54654 -16.76395 -16.38707 -15.98370 -15.59690 -15.26775 -14.94008 -14.59742 -14.26909 -14.13161 -13.80485 -13.41124 -13.34884 -12.95253 -12.65860 -12.56112 -12.19749 -11.92830 -11.87789 -11.59181 -11.48544 -11.29937 -11.22641 -11.01140 -10.92124 -10.78154 -10.55217 -10.32347 -9.82940 -9.69964 -9.47112 -9.30527 -8.81738 -8.26289 -7.29914 -6.39031 -3.34040 2.69332 3.15654 3.30967 3.37745 3.52418 3.72619 4.25503 4.41469 4.48671 4.52593 4.61015 4.76873 4.88159 4.99114 5.06744 5.24894 5.28224 5.38838 5.42039 5.49778 5.52884 5.60010 5.62528 5.67313 5.75150 5.85789 5.87480 6.00085 6.03596 6.05968 6.10580 6.17119 6.18498 6.25892 6.41556 6.61638 6.78017 6.82455 6.99707 7.70786 8.15136 8.31099 8.87470 9.39438 10.24621 11.09948 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.005293 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.100198 B = 5288.815422 C = 5460.090737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.085 3.915 3 H 0.092 0.908 4 O -0.374 6.374 5 C 0.048 3.952 6 C -0.151 4.151 7 C -0.111 4.111 8 C -0.149 4.149 9 C 0.525 3.475 10 O -0.545 6.545 11 N -0.574 5.574 12 C 0.094 3.906 13 C 0.076 3.924 14 C 0.103 3.897 15 N -0.617 5.617 16 C -0.304 4.304 17 H 0.082 0.918 18 C -0.021 4.021 19 N -0.929 5.929 20 Si 1.058 2.942 21 H -0.293 1.293 22 H -0.281 1.281 23 H -0.294 1.294 24 C 0.089 3.911 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.263 0.737 42 H 0.059 0.941 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 -3.234 15.545 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.027 3.973 3 H 0.110 0.890 4 O -0.293 6.293 5 C -0.029 4.029 6 C -0.188 4.188 7 C -0.114 4.114 8 C -0.206 4.206 9 C 0.312 3.688 10 O -0.423 6.423 11 N -0.304 5.304 12 C -0.047 4.047 13 C -0.029 4.029 14 C -0.024 4.024 15 N -0.346 5.346 16 C -0.430 4.430 17 H 0.099 0.901 18 C -0.221 4.221 19 N -0.571 5.571 20 Si 0.889 3.111 21 H -0.221 1.221 22 H -0.207 1.207 23 H -0.222 1.222 24 C -0.037 4.037 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.788 -3.171 15.907 18.448 hybrid contribution -1.338 0.443 -0.866 1.654 sum -10.126 -2.728 15.042 18.336 Atomic orbital electron populations 1.22013 0.93563 1.02657 1.02356 1.22775 0.95093 0.96846 0.82577 0.89047 1.88851 1.39497 1.67873 1.33102 1.23520 0.88041 0.96449 0.94871 1.23451 1.00708 0.97826 0.96864 1.22065 0.96760 0.96017 0.96590 1.22237 0.96548 1.01648 1.00163 1.20153 0.79745 0.88126 0.80777 1.90648 1.63402 1.16962 1.71262 1.47343 1.44515 1.11099 1.27426 1.21689 0.94170 0.94151 0.94728 1.23066 1.00070 0.82560 0.97226 1.22861 0.90469 0.98948 0.90168 1.46266 1.01568 1.75284 1.11445 1.20098 0.95442 1.34779 0.92707 0.90065 1.25754 0.93751 1.01333 1.01250 1.70892 1.36673 1.32713 1.16777 0.83842 0.75648 0.76764 0.74808 1.22104 1.20721 1.22159 1.23138 0.96350 0.97443 0.86798 0.91646 0.92087 0.91011 0.92117 0.88666 0.89086 0.89011 0.90510 0.90857 0.91490 0.92848 0.92264 0.88701 0.87177 0.93284 0.93601 0.92712 0.92326 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.40 37.16 0.31 -1.21 16 2 C 0.08 1.08 3.66 -26.16 -0.10 0.98 16 3 H 0.09 1.38 6.46 -51.93 -0.34 1.04 16 4 O -0.37 -4.85 11.19 -35.23 -0.39 -5.25 16 5 C 0.05 0.52 7.72 38.21 0.29 0.82 16 6 C -0.15 -1.59 4.73 -24.72 -0.12 -1.71 16 7 C -0.11 -1.37 0.61 -154.13 -0.09 -1.46 16 8 C -0.15 -1.54 6.92 37.16 0.26 -1.28 16 9 C 0.52 8.43 6.46 -10.99 -0.07 8.36 16 10 O -0.54 -10.42 14.92 5.56 0.08 -10.34 16 11 N -0.57 -9.59 3.05 -173.55 -0.53 -10.12 16 12 C 0.09 1.79 9.51 59.85 0.57 2.36 16 13 C 0.08 1.17 2.29 -67.68 -0.15 1.02 16 14 C 0.10 1.81 7.66 -8.51 -0.07 1.75 16 15 N -0.62 -13.64 2.34 -184.61 -0.43 -14.07 16 16 C -0.30 -8.12 10.69 -15.06 -0.16 -8.28 16 17 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 18 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 19 N -0.93 -28.12 13.70 55.49 0.76 -27.36 16 20 Si 1.06 25.02 25.53 -169.99 -4.34 20.68 16 21 H -0.29 -6.67 7.00 56.52 0.40 -6.27 16 22 H -0.28 -6.02 5.56 56.52 0.31 -5.71 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C 0.09 1.66 4.61 -8.37 -0.04 1.62 16 25 H 0.06 0.59 6.68 -51.93 -0.35 0.25 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.70 6.86 -51.93 -0.36 0.34 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.78 7.87 -51.93 -0.41 0.37 16 31 H 0.09 1.01 6.21 -51.93 -0.32 0.69 16 32 H 0.08 0.81 4.47 -51.93 -0.23 0.58 16 33 H 0.07 0.61 6.74 -51.93 -0.35 0.26 16 34 H 0.07 0.70 6.81 -51.93 -0.35 0.35 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.08 7.53 -51.93 -0.39 0.69 16 37 H 0.09 2.01 5.34 -51.93 -0.28 1.73 16 38 H 0.11 1.33 3.64 -51.93 -0.19 1.15 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.26 7.90 8.73 -40.82 -0.36 7.54 16 42 H 0.06 1.03 6.94 -51.93 -0.36 0.67 16 43 H 0.06 1.13 5.38 -51.93 -0.28 0.85 16 LS Contribution 315.76 15.07 4.76 4.76 Total: -1.00 -31.53 315.76 -5.96 -37.49 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.41 Total: 1.93 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 0.54 Total: 2.29 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.20 Total: -51.55 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.31 Total: -15.59 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -4.34 Total: 20.68 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.53 -5.96 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043445144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.970 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds