Wall clock time and date at job start Tue Mar 31 2020 02:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.87003 * 2 1 4 4 O 1.43744 * 109.87673 * 121.00477 * 2 1 3 5 5 C 1.44388 * 106.97561 * 145.93712 * 4 2 1 6 6 C 1.54994 * 103.48659 * 319.93586 * 5 4 2 7 7 C 1.54104 * 109.87773 * 238.98832 * 2 1 3 8 8 C 1.52999 * 110.48548 * 119.87359 * 7 2 1 9 9 C 1.50700 * 110.48742 * 357.22133 * 7 2 1 10 10 O 1.21277 * 119.99684 * 30.67311 * 9 7 2 11 11 N 1.34776 * 120.00186 * 210.66840 * 9 7 2 12 12 C 1.46501 * 119.99968 * 354.22183 * 11 9 7 13 13 C 1.46493 * 120.00063 * 174.21767 * 11 9 7 14 14 C 1.53948 * 113.74029 * 216.67753 * 13 11 9 15 15 N 1.47585 * 86.11576 * 222.04700 * 14 13 11 16 16 C 1.36937 * 134.49214 * 204.64402 * 15 14 13 17 17 H 1.07994 * 119.99910 * 184.90545 * 16 15 14 18 18 C 1.38815 * 120.00166 * 4.89433 * 16 15 14 19 19 N 1.31622 * 119.99967 * 5.15526 * 18 16 15 20 20 Si 1.86793 * 120.00057 * 185.14762 * 18 16 15 21 21 H 1.48502 * 109.46853 * 95.00368 * 20 18 16 22 22 H 1.48503 * 109.47282 * 215.00167 * 20 18 16 23 23 H 1.48498 * 109.47385 * 335.00344 * 20 18 16 24 24 C 1.47577 * 91.01514 * 24.63976 * 15 14 13 25 25 H 1.09003 * 109.47135 * 290.81383 * 1 2 3 26 26 H 1.09005 * 109.47177 * 50.80735 * 1 2 3 27 27 H 1.08999 * 109.47254 * 170.80887 * 1 2 3 28 28 H 1.08999 * 110.61351 * 78.43713 * 5 4 2 29 29 H 1.08996 * 110.61796 * 201.43364 * 5 4 2 30 30 H 1.08998 * 110.90349 * 155.22139 * 6 5 4 31 31 H 1.08995 * 110.90995 * 278.78867 * 6 5 4 32 32 H 1.08994 * 109.47554 * 65.03111 * 8 7 2 33 33 H 1.09006 * 109.47004 * 185.02915 * 8 7 2 34 34 H 1.09000 * 109.47089 * 305.02214 * 8 7 2 35 35 H 1.09005 * 109.47195 * 90.28583 * 12 11 9 36 36 H 1.08995 * 109.47090 * 210.28805 * 12 11 9 37 37 H 1.09004 * 109.46979 * 330.28835 * 12 11 9 38 38 H 1.09002 * 112.94332 * 348.41085 * 13 11 9 39 39 H 1.08998 * 113.77319 * 336.34852 * 14 13 11 40 40 H 1.09007 * 113.76740 * 107.74914 * 14 13 11 41 41 H 0.96991 * 119.99960 * 179.97438 * 19 18 16 42 42 H 1.08995 * 113.77226 * 221.05407 * 24 15 14 43 43 H 1.09000 * 113.77084 * 89.65751 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0187 -0.6963 1.1587 5 6 3.2379 -1.3632 0.7667 6 6 2.9194 -1.8925 -0.6549 7 6 2.0539 -0.7467 -1.2421 8 6 2.9073 0.1841 -2.1059 9 6 0.9072 -1.3079 -2.0428 10 8 -0.1633 -0.7380 -2.0504 11 7 1.0714 -2.4430 -2.7506 12 6 2.3957 -3.0625 -2.8448 13 6 -0.0743 -3.0574 -3.4258 14 6 -0.0529 -4.5966 -3.4061 15 7 -0.4931 -4.5207 -4.8128 16 6 -1.1737 -5.3618 -5.6521 17 1 -1.3075 -5.0966 -6.6904 18 6 -1.6914 -6.5556 -5.1684 19 7 -1.6175 -6.8324 -3.8838 20 14 -2.4933 -7.7689 -6.3407 21 1 -1.4944 -8.7837 -6.7622 22 1 -3.6258 -8.4433 -5.6567 23 1 -2.9970 -7.0442 -7.5349 24 6 0.0947 -3.1742 -4.9515 25 1 -0.3633 0.3652 0.9606 26 1 -0.3634 0.6494 -0.7965 27 1 -0.3634 -1.0145 -0.1641 28 1 4.0684 -0.6579 0.7365 29 1 3.4584 -2.1888 1.4432 30 1 3.8330 -2.0243 -1.2345 31 1 2.3544 -2.8232 -0.6058 32 1 3.8026 0.4720 -1.5549 33 1 3.1948 -0.3323 -3.0219 34 1 2.3325 1.0757 -2.3566 35 1 2.5229 -3.7739 -2.0288 36 1 2.4863 -3.5830 -3.7981 37 1 3.1631 -2.2914 -2.7775 38 1 -1.0281 -2.6262 -3.1216 39 1 0.9432 -5.0206 -3.2798 40 1 -0.7923 -5.0378 -2.7376 41 1 -1.9796 -7.6663 -3.5458 42 1 -0.5266 -2.4797 -5.5168 43 1 1.1343 -3.1802 -5.2790 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043445149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:57 Heat of formation + Delta-G solvation = -8.773683 kcal Electronic energy + Delta-G solvation = -23865.643051 eV Core-core repulsion = 20527.595386 eV Total energy + Delta-G solvation = -3338.047665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.30685 -40.21667 -38.90701 -36.42622 -34.67759 -33.79839 -32.12570 -29.64269 -29.42837 -27.94775 -26.63278 -26.14598 -24.86193 -23.23390 -22.86437 -20.75617 -19.96131 -18.85710 -17.92442 -17.34095 -17.22982 -16.89593 -16.73706 -16.19228 -15.80469 -15.54965 -15.06824 -14.93308 -14.42899 -14.23276 -13.74988 -13.61698 -13.53044 -13.40591 -13.28728 -13.18760 -13.10364 -12.81723 -12.62587 -12.55616 -12.41657 -11.99293 -11.94745 -11.75442 -11.67553 -11.55898 -11.51283 -10.90946 -10.62722 -10.23732 -9.46069 -8.96959 -7.93890 -5.30481 1.44760 1.46677 1.56007 1.58973 1.96090 2.46773 2.90091 3.22936 3.32766 3.36404 3.45012 3.79892 3.84715 3.95368 4.11912 4.24223 4.28595 4.29942 4.42881 4.43789 4.57932 4.65366 4.69819 4.70680 4.77062 4.81437 4.88922 4.89957 4.93340 4.96628 5.08884 5.13769 5.17029 5.23007 5.28266 5.44462 5.46212 5.70554 5.89087 5.98356 6.49349 6.86367 7.19204 7.55196 8.48692 9.21544 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032609 B = 0.004078 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.450943 B = 6864.899208 C = 6889.891898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.093 3.907 3 H 0.095 0.905 4 O -0.400 6.400 5 C 0.041 3.959 6 C -0.153 4.153 7 C -0.104 4.104 8 C -0.130 4.130 9 C 0.515 3.485 10 O -0.568 6.568 11 N -0.597 5.597 12 C 0.063 3.937 13 C 0.118 3.882 14 C 0.154 3.846 15 N -0.636 5.636 16 C -0.237 4.237 17 H 0.085 0.915 18 C -0.064 4.064 19 N -0.952 5.952 20 Si 0.982 3.018 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.116 3.884 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.043 0.957 41 H 0.250 0.750 42 H 0.046 0.954 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.952 13.204 6.520 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.036 3.964 3 H 0.113 0.887 4 O -0.320 6.320 5 C -0.035 4.035 6 C -0.190 4.190 7 C -0.108 4.108 8 C -0.188 4.188 9 C 0.305 3.695 10 O -0.447 6.447 11 N -0.329 5.329 12 C -0.079 4.079 13 C 0.013 3.987 14 C 0.027 3.973 15 N -0.363 5.363 16 C -0.365 4.365 17 H 0.103 0.897 18 C -0.257 4.257 19 N -0.600 5.600 20 Si 0.810 3.190 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.191 1.191 24 C -0.010 4.010 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.119 13.222 6.612 21.145 hybrid contribution -0.971 -1.163 -0.695 1.667 sum 14.148 12.059 5.917 19.509 Atomic orbital electron populations 1.22169 0.94389 1.02158 1.00342 1.22686 0.94773 0.95943 0.83042 0.88727 1.88900 1.41289 1.68371 1.33423 1.23837 0.87267 0.97217 0.95139 1.23901 1.00938 0.96962 0.97172 1.22209 0.94330 0.98143 0.96085 1.21856 0.99477 0.97966 0.99455 1.20973 0.89467 0.79954 0.79122 1.90724 1.30296 1.59961 1.63741 1.47995 1.10008 1.24991 1.49871 1.22531 0.82723 0.99739 1.02874 1.23215 0.89545 0.93569 0.92389 1.22593 0.97018 0.91009 0.86632 1.45909 1.63082 1.16306 1.10965 1.19392 1.26509 0.98952 0.91694 0.89706 1.25663 1.02002 1.00267 0.97748 1.70014 1.51721 1.25086 1.13191 0.85014 0.77390 0.78704 0.77939 1.21065 1.22126 1.19141 1.23070 0.97314 0.86166 0.94442 0.93996 0.89965 0.94806 0.89310 0.87878 0.85385 0.90802 0.88167 0.90660 0.92036 0.91265 0.91528 0.87100 0.89633 0.94239 0.93868 0.94117 0.93573 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 7.89 71.98 0.57 -3.43 16 2 C 0.09 2.19 3.72 30.97 0.12 2.30 16 3 H 0.10 1.81 7.69 -2.39 -0.02 1.79 16 4 O -0.40 -9.75 11.19 -148.98 -1.67 -11.41 16 5 C 0.04 0.63 7.72 72.66 0.56 1.19 16 6 C -0.15 -2.42 4.06 32.01 0.13 -2.29 16 7 C -0.10 -2.15 0.61 -51.82 -0.03 -2.18 16 8 C -0.13 -1.80 8.03 71.98 0.58 -1.23 16 9 C 0.52 15.65 5.68 87.66 0.50 16.15 16 10 O -0.57 -21.53 11.43 -3.02 -0.03 -21.56 16 11 N -0.60 -18.34 3.01 -828.31 -2.49 -20.84 16 12 C 0.06 1.37 7.14 127.77 0.91 2.28 16 13 C 0.12 4.78 4.37 46.75 0.20 4.98 16 14 C 0.15 7.34 7.14 86.48 0.62 7.96 16 15 N -0.64 -33.06 3.69 -717.32 -2.65 -35.71 16 16 C -0.24 -13.46 10.69 84.03 0.90 -12.56 16 17 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 18 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 19 N -0.95 -57.85 11.29 21.65 0.24 -57.61 16 20 Si 0.98 45.82 29.56 68.60 2.03 47.85 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 C 0.12 4.79 8.46 86.48 0.73 5.52 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 2.58 6.53 -2.38 -0.02 2.57 16 27 H 0.03 1.21 6.24 -2.39 -0.01 1.20 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.13 1.09 6.36 -2.39 -0.02 1.08 16 31 H 0.07 1.50 5.83 -2.39 -0.01 1.49 16 32 H 0.10 0.80 8.13 -2.39 -0.02 0.78 16 33 H 0.07 0.94 6.92 -2.38 -0.02 0.92 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.42 6.49 -2.38 -0.02 1.41 16 36 H 0.07 1.60 6.37 -2.39 -0.02 1.58 16 37 H 0.11 1.55 3.93 -2.38 -0.01 1.54 16 38 H 0.09 3.96 7.29 -2.39 -0.02 3.95 16 39 H 0.04 1.79 6.72 -2.39 -0.02 1.77 16 40 H 0.04 2.41 6.86 -2.38 -0.02 2.39 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 43 H 0.06 2.26 6.97 -2.39 -0.02 2.24 16 Total: -1.00 -73.46 321.68 2.69 -70.77 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.01 Total: 12.99 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 6.25 Total: 15.52 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -4.90 Total: -114.16 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.70 Total: -32.97 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -73.46 2.69 -70.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043445149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.999 kcal (2) G-P(sol) polarization free energy of solvation -73.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds