Wall clock time and date at job start Tue Mar 31 2020 02:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.41748 * 2 1 4 4 C 1.54479 * 110.37261 * 122.31291 * 2 1 3 5 5 C 1.54506 * 104.06283 * 142.80988 * 4 2 1 6 6 C 1.54481 * 104.06275 * 359.97438 * 5 4 2 7 7 H 1.09005 * 110.37330 * 94.96543 * 6 5 4 8 8 C 1.53001 * 110.37367 * 217.18941 * 6 5 4 9 9 C 1.50699 * 109.47045 * 184.99890 * 8 6 5 10 10 O 1.21279 * 120.00406 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99563 * 179.97438 * 9 8 6 12 12 C 1.46499 * 120.00229 * 0.02562 * 11 9 8 13 13 C 1.46499 * 119.99546 * 180.02562 * 11 9 8 14 14 C 1.53949 * 113.74026 * 216.67704 * 13 11 9 15 15 N 1.47577 * 86.11711 * 222.04984 * 14 13 11 16 16 C 1.36938 * 134.49181 * 204.64118 * 15 14 13 17 17 H 1.07995 * 120.00333 * 179.97438 * 16 15 14 18 18 C 1.38819 * 120.00122 * 359.97438 * 16 15 14 19 19 N 1.31625 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00144 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47297 * 89.99812 * 20 18 16 22 22 H 1.48507 * 109.47220 * 210.00154 * 20 18 16 23 23 H 1.48504 * 109.47175 * 329.99807 * 20 18 16 24 24 C 1.47569 * 91.01592 * 24.64103 * 15 14 13 25 25 O 1.44422 * 104.80412 * 336.02375 * 6 5 4 26 26 H 1.09006 * 109.47164 * 297.68856 * 1 2 3 27 27 H 1.09004 * 109.47186 * 57.68546 * 1 2 3 28 28 H 1.08996 * 109.47475 * 177.68655 * 1 2 3 29 29 H 1.08998 * 110.50893 * 24.16038 * 4 2 1 30 30 H 1.09006 * 110.62519 * 261.51461 * 4 2 1 31 31 H 1.08999 * 110.51243 * 241.35321 * 5 4 2 32 32 H 1.08999 * 110.51310 * 118.64337 * 5 4 2 33 33 H 1.09004 * 109.47016 * 65.00131 * 8 6 5 34 34 H 1.09002 * 109.47172 * 305.00345 * 8 6 5 35 35 H 1.09002 * 109.47391 * 89.99442 * 12 11 9 36 36 H 1.09001 * 109.46813 * 329.99499 * 12 11 9 37 37 H 1.09004 * 109.47041 * 209.99626 * 12 11 9 38 38 H 1.09000 * 112.94929 * 348.40775 * 13 11 9 39 39 H 1.09004 * 113.77050 * 336.35425 * 14 13 11 40 40 H 1.09005 * 113.76742 * 107.74887 * 14 13 11 41 41 H 0.97001 * 119.99979 * 179.97438 * 19 18 16 42 42 H 1.09003 * 113.76954 * 221.06191 * 24 15 14 43 43 H 1.08998 * 113.87296 * 89.67275 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0678 -0.7741 1.2239 5 6 3.3177 -1.5057 0.6858 6 6 3.3869 -1.0876 -0.7997 7 1 4.0535 -0.2340 -0.9231 8 6 3.8597 -2.2600 -1.6616 9 6 4.0376 -1.7976 -3.0848 10 8 3.8092 -0.6438 -3.3806 11 7 4.4515 -2.6660 -4.0288 12 6 4.7279 -4.0596 -3.6714 13 6 4.6249 -2.2163 -5.4122 14 6 4.2215 -3.2685 -6.4611 15 7 5.4357 -2.8584 -7.1928 16 6 5.8261 -2.9014 -8.5047 17 1 6.7966 -2.5248 -8.7919 18 6 4.9742 -3.4289 -9.4654 19 7 3.7914 -3.8883 -9.1153 20 14 5.5069 -3.4882 -11.2548 21 1 6.2012 -4.7733 -11.5223 22 1 4.3127 -3.3789 -12.1308 23 1 6.4304 -2.3592 -11.5340 24 6 6.0603 -2.3835 -5.9430 25 8 2.0323 -0.7244 -1.1443 26 1 -0.3634 0.4775 0.9100 27 1 -0.3634 0.5494 -0.8685 28 1 -0.3634 -1.0268 -0.0415 29 1 1.3275 -1.4919 1.5771 30 1 2.3426 -0.0857 2.0232 31 1 3.1955 -2.5853 0.7730 32 1 4.2109 -1.1773 1.2173 33 1 3.1174 -3.0576 -1.6288 34 1 4.8101 -2.6322 -1.2790 35 1 3.8193 -4.6510 -3.7850 36 1 5.0664 -4.1089 -2.6365 37 1 5.5036 -4.4558 -4.3267 38 1 4.2020 -1.2283 -5.5941 39 1 4.2563 -4.2933 -6.0914 40 1 3.2937 -3.0348 -6.9835 41 1 3.1960 -4.2566 -9.7867 42 1 6.6007 -1.4432 -6.0516 43 1 6.6360 -3.1470 -5.4197 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043746935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:30 Heat of formation + Delta-G solvation = -25.388397 kcal Electronic energy + Delta-G solvation = -22641.347409 eV Core-core repulsion = 19302.579276 eV Total energy + Delta-G solvation = -3338.768133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12954 -39.20451 -37.47136 -34.36859 -32.91151 -32.31317 -31.90671 -29.42709 -27.58494 -26.55151 -24.85253 -24.76373 -22.95424 -21.65747 -20.95949 -19.65011 -18.37602 -17.11142 -16.80007 -16.33443 -16.13635 -15.75018 -15.06711 -14.90588 -14.72612 -13.95328 -13.78885 -13.55364 -13.22056 -12.89598 -12.52367 -12.42765 -12.25352 -12.04053 -11.95250 -11.79000 -11.67087 -11.47253 -11.26254 -11.21504 -10.99029 -10.87349 -10.80147 -10.66853 -10.18843 -10.04896 -9.72740 -9.53759 -9.32171 -8.78961 -8.05205 -6.89228 -5.77084 -3.09984 2.99627 3.34118 3.41292 3.45686 3.47429 3.72910 4.38896 4.42990 4.49072 4.70706 4.76092 4.89929 5.07213 5.17394 5.20889 5.26042 5.27387 5.34983 5.40831 5.48948 5.54128 5.54927 5.56466 5.63521 5.75585 5.84554 5.90111 5.91906 5.95621 6.01303 6.14273 6.23277 6.46975 6.61598 6.85877 6.89066 7.22450 7.39113 7.54922 7.85998 7.97302 8.58497 9.04071 9.69976 10.57731 11.40058 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037573 B = 0.003184 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.044878 B = 8792.110496 C = 9092.255887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.066 0.934 4 C -0.151 4.151 5 C -0.153 4.153 6 C 0.092 3.908 7 H 0.076 0.924 8 C -0.135 4.135 9 C 0.511 3.489 10 O -0.536 6.536 11 N -0.603 5.603 12 C 0.078 3.922 13 C 0.092 3.908 14 C 0.157 3.843 15 N -0.606 5.606 16 C -0.223 4.223 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.108 3.892 25 O -0.353 6.353 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 2.052 22.852 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.084 0.916 4 C -0.188 4.188 5 C -0.190 4.190 6 C 0.034 3.966 7 H 0.094 0.906 8 C -0.175 4.175 9 C 0.298 3.702 10 O -0.413 6.413 11 N -0.337 5.337 12 C -0.065 4.065 13 C -0.012 4.012 14 C 0.031 3.969 15 N -0.333 5.333 16 C -0.350 4.350 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.019 4.019 25 O -0.272 6.272 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.132 0.868 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.424 2.548 22.120 22.398 hybrid contribution 0.468 -0.363 -0.788 0.986 sum -1.957 2.184 21.332 21.533 Atomic orbital electron populations 1.21785 0.93378 1.02877 1.02254 1.22948 0.95268 0.95623 0.85228 0.91561 1.22997 0.97674 0.99778 0.98400 1.23020 0.98572 1.01523 0.95925 1.22673 0.85724 0.96403 0.91816 0.90615 1.21811 1.03278 0.99232 0.93202 1.20463 0.76834 0.85829 0.87066 1.90693 1.50174 1.18274 1.82113 1.48043 1.66097 1.10067 1.09446 1.21760 1.01732 0.82498 1.00507 1.23975 0.97999 1.01234 0.77991 1.22623 0.93364 0.93452 0.87497 1.45656 1.15349 1.71295 1.00973 1.18996 1.00478 1.34956 0.80616 0.90076 1.24811 0.96512 1.00887 0.98196 1.69823 1.08400 1.45850 1.32626 0.86086 0.77353 0.77749 0.84362 1.21603 1.21574 1.20560 1.22971 0.94273 0.97069 0.87627 1.89278 1.26245 1.74154 1.37558 0.91445 0.91759 0.91847 0.90654 0.90774 0.90480 0.90481 0.88235 0.87865 0.92551 0.91787 0.90434 0.86781 0.95095 0.90575 0.93566 0.93607 0.94800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.52 37.16 0.35 -0.96 16 2 C 0.07 0.71 3.92 -25.96 -0.10 0.60 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.15 -1.19 6.63 -25.16 -0.17 -1.36 16 5 C -0.15 -1.24 6.63 -25.16 -0.17 -1.41 16 6 C 0.09 1.09 2.74 -25.95 -0.07 1.02 16 7 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 8 C -0.14 -1.56 3.88 -27.88 -0.11 -1.67 16 9 C 0.51 8.51 7.60 -10.98 -0.08 8.42 16 10 O -0.54 -11.13 15.10 -0.99 -0.01 -11.15 16 11 N -0.60 -10.13 3.09 -175.74 -0.54 -10.67 16 12 C 0.08 1.01 8.84 59.85 0.53 1.54 16 13 C 0.09 1.90 4.40 -70.14 -0.31 1.60 16 14 C 0.16 3.78 6.93 -2.98 -0.02 3.76 16 15 N -0.61 -15.94 3.70 -178.09 -0.66 -16.60 16 16 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 17 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -27.60 11.39 55.49 0.63 -26.97 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.11 2.31 8.46 -2.98 -0.03 2.28 16 25 O -0.35 -5.08 10.61 -41.78 -0.44 -5.53 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 34 H 0.10 0.87 7.40 -51.93 -0.38 0.49 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.59 6.44 -51.93 -0.33 0.26 16 37 H 0.08 1.08 6.36 -51.93 -0.33 0.75 16 38 H 0.11 2.62 7.24 -51.93 -0.38 2.24 16 39 H 0.03 0.73 6.71 -51.93 -0.35 0.38 16 40 H 0.08 2.07 7.16 -51.93 -0.37 1.70 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.03 0.68 6.98 -51.93 -0.36 0.32 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -34.55 341.83 -8.41 -42.96 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.08 Total: -1.55 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.43 Total: 6.99 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.57 Total: -54.24 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.46 Total: -16.68 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.55 -8.41 -42.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043746935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.574 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds