Wall clock time and date at job start Tue Mar 31 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.27072 * 2 1 4 4 C 1.54940 * 110.39411 * 237.84587 * 2 1 3 5 5 C 1.55453 * 100.98748 * 204.64682 * 4 2 1 6 6 C 1.54381 * 102.18663 * 34.04291 * 5 4 2 7 7 H 1.08992 * 109.83076 * 98.29886 * 6 5 4 8 8 C 1.53004 * 109.82678 * 219.18316 * 6 5 4 9 9 C 1.50703 * 109.46570 * 184.81521 * 8 6 5 10 10 O 1.21282 * 120.00172 * 359.97438 * 9 8 6 11 11 N 1.34783 * 119.99665 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.00050 * 359.97438 * 11 9 8 13 13 C 1.46503 * 119.99739 * 179.97438 * 11 9 8 14 14 C 1.53944 * 113.73762 * 222.42717 * 13 11 9 15 15 N 1.47583 * 86.11230 * 222.04878 * 14 13 11 16 16 C 1.36944 * 134.49146 * 204.64199 * 15 14 13 17 17 H 1.07994 * 119.99970 * 184.90908 * 16 15 14 18 18 C 1.38817 * 119.99571 * 4.90855 * 16 15 14 19 19 N 1.31615 * 120.00088 * 354.87198 * 18 16 15 20 20 Si 1.86797 * 119.99593 * 174.87657 * 18 16 15 21 21 H 1.48506 * 109.47315 * 94.99879 * 20 18 16 22 22 H 1.48495 * 109.47200 * 214.99962 * 20 18 16 23 23 H 1.48497 * 109.47281 * 334.99969 * 20 18 16 24 24 C 1.47572 * 91.01584 * 24.64329 * 15 14 13 25 25 O 1.43243 * 107.66210 * 338.73690 * 6 5 4 26 26 H 1.09000 * 109.47341 * 299.36846 * 1 2 3 27 27 H 1.08996 * 109.47032 * 59.36987 * 1 2 3 28 28 H 1.09000 * 109.47349 * 179.36738 * 1 2 3 29 29 H 1.08997 * 111.12787 * 322.51679 * 4 2 1 30 30 H 1.09006 * 111.12471 * 86.63756 * 4 2 1 31 31 H 1.09000 * 110.83607 * 275.88987 * 5 4 2 32 32 H 1.09002 * 110.92412 * 152.23291 * 5 4 2 33 33 H 1.08995 * 109.47466 * 64.81696 * 8 6 5 34 34 H 1.09000 * 109.47216 * 304.81085 * 8 6 5 35 35 H 1.08993 * 109.47056 * 265.01366 * 12 11 9 36 36 H 1.09003 * 109.46778 * 25.01303 * 12 11 9 37 37 H 1.08993 * 109.46731 * 145.00925 * 12 11 9 38 38 H 1.08994 * 112.94460 * 354.15517 * 13 11 9 39 39 H 1.09005 * 113.77193 * 336.34756 * 14 13 11 40 40 H 1.09002 * 113.77118 * 107.74822 * 14 13 11 41 41 H 0.97005 * 119.99344 * 179.97438 * 19 18 16 42 42 H 1.09007 * 113.76626 * 221.05876 * 24 15 14 43 43 H 1.09001 * 113.77305 * 89.66167 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0699 -0.7729 -1.2295 5 6 3.4732 -1.2023 -0.7168 6 6 3.2125 -1.4393 0.7863 7 1 3.0656 -2.5030 0.9728 8 6 4.3990 -0.9277 1.6058 9 6 4.1900 -1.2688 3.0588 10 8 3.1904 -1.8621 3.4048 11 7 5.1136 -0.9135 3.9739 12 6 6.3208 -0.1963 3.5560 13 6 4.9103 -1.2445 5.3865 14 6 5.2832 -0.1035 6.3503 15 7 5.8990 -1.1492 7.1901 16 6 6.1869 -1.2627 8.5242 17 1 6.7252 -2.1250 8.8889 18 6 5.7869 -0.2694 9.4074 19 7 5.2210 0.8279 8.9514 20 14 6.0519 -0.4900 11.2433 21 1 7.3253 0.1621 11.6416 22 1 4.9248 0.1310 11.9843 23 1 6.1164 -1.9386 11.5636 24 6 6.0799 -2.0234 6.0151 25 8 2.0285 -0.7155 1.1414 26 1 -0.3634 0.5040 0.8956 27 1 -0.3633 0.5236 -0.8842 28 1 -0.3634 -1.0276 -0.0113 29 1 1.4506 -1.6423 -1.4501 30 1 2.1509 -0.1206 -2.0991 31 1 4.2005 -0.4037 -0.8632 32 1 3.8011 -2.1209 -1.2032 33 1 4.4784 0.1536 1.4942 34 1 5.3158 -1.3980 1.2504 35 1 7.1301 -0.9089 3.3973 36 1 6.1218 0.3401 2.6282 37 1 6.6084 0.5135 4.3315 38 1 3.9332 -1.6856 5.5831 39 1 5.9999 0.6054 5.9355 40 1 4.4226 0.3805 6.8120 41 1 4.9411 1.5218 9.5687 42 1 5.8554 -3.0723 6.2091 43 1 7.0305 -1.8785 5.5018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043746937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:32 Heat of formation + Delta-G solvation = -23.435501 kcal Electronic energy + Delta-G solvation = -22696.715782 eV Core-core repulsion = 19358.032333 eV Total energy + Delta-G solvation = -3338.683449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16909 -39.20005 -37.44340 -34.34409 -32.88584 -32.34921 -31.90448 -29.38523 -27.57003 -26.54451 -24.92627 -24.77711 -22.93782 -21.63396 -21.03667 -19.51094 -18.32140 -17.14387 -17.02534 -16.64695 -15.84248 -15.71572 -15.13271 -14.72814 -14.43629 -13.98612 -13.79531 -13.61397 -13.18442 -12.92805 -12.66088 -12.43533 -12.21331 -12.10713 -11.91721 -11.82781 -11.70534 -11.37165 -11.22291 -11.20023 -11.03865 -10.93049 -10.88486 -10.63470 -10.16517 -10.03923 -9.55687 -9.52038 -9.28026 -8.73485 -8.02304 -6.88565 -5.76927 -3.09471 3.03051 3.35421 3.42176 3.46264 3.48294 3.70140 4.27354 4.46816 4.53689 4.55587 4.81028 4.95150 5.04792 5.16576 5.19204 5.27212 5.33021 5.34454 5.43436 5.47327 5.49191 5.53576 5.55181 5.60791 5.71573 5.83218 5.89715 5.91276 6.04522 6.07151 6.15853 6.23874 6.49594 6.64551 6.84888 7.11517 7.24446 7.41862 7.56288 7.88900 7.98221 8.62472 9.04359 9.70648 10.58717 11.40151 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035093 B = 0.003270 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.690479 B = 8561.795414 C = 8940.691926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 H 0.066 0.934 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.098 3.902 7 H 0.086 0.914 8 C -0.152 4.152 9 C 0.511 3.489 10 O -0.533 6.533 11 N -0.604 5.604 12 C 0.074 3.926 13 C 0.092 3.908 14 C 0.152 3.848 15 N -0.606 5.606 16 C -0.223 4.223 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.109 3.891 25 O -0.355 6.355 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 -0.890 -23.020 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.012 3.988 3 H 0.084 0.916 4 C -0.189 4.189 5 C -0.190 4.190 6 C 0.040 3.960 7 H 0.104 0.896 8 C -0.192 4.192 9 C 0.299 3.701 10 O -0.409 6.409 11 N -0.338 5.338 12 C -0.069 4.069 13 C -0.011 4.011 14 C 0.026 3.974 15 N -0.332 5.332 16 C -0.351 4.351 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.744 3.256 21 H -0.217 1.217 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.019 4.019 25 O -0.274 6.274 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.133 0.867 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.821 -1.106 -22.265 22.470 hybrid contribution 0.626 0.150 0.795 1.023 sum -2.195 -0.956 -21.470 21.603 Atomic orbital electron populations 1.21861 0.93883 1.02777 1.02234 1.22972 0.94993 0.95601 0.85263 0.91571 1.23340 0.96205 1.00893 0.98459 1.23228 0.97838 1.02668 0.95278 1.22444 0.84760 0.96999 0.91844 0.89598 1.22171 0.99874 1.03501 0.93640 1.20459 0.82914 0.79214 0.87536 1.90699 1.27901 1.41035 1.81314 1.48035 1.20742 1.56783 1.08203 1.21826 0.87232 0.96967 1.00915 1.23935 1.00397 0.99786 0.77006 1.22697 0.96849 0.90927 0.86940 1.45670 1.71068 1.15001 1.01504 1.18996 1.30903 1.05025 0.80172 0.90115 1.24819 1.00917 0.96397 0.98170 1.69827 1.45910 1.07570 1.33269 0.86083 0.77209 0.77529 0.84822 1.21679 1.21535 1.20500 1.22960 0.95269 0.95471 0.88164 1.88670 1.41524 1.64360 1.32837 0.91733 0.91593 0.91959 0.90327 0.90159 0.90339 0.89916 0.88712 0.88297 0.92887 0.91586 0.90153 0.86653 0.95201 0.90366 0.93582 0.93602 0.94782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.62 37.16 0.36 -1.03 16 2 C 0.07 0.71 4.07 -25.71 -0.10 0.60 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.15 -1.15 6.58 -24.40 -0.16 -1.31 16 5 C -0.15 -1.18 6.56 -24.70 -0.16 -1.34 16 6 C 0.10 1.15 3.04 -26.01 -0.08 1.07 16 7 H 0.09 1.12 7.94 -51.93 -0.41 0.70 16 8 C -0.15 -1.75 3.75 -27.88 -0.10 -1.85 16 9 C 0.51 8.60 7.57 -10.98 -0.08 8.52 16 10 O -0.53 -11.22 14.95 -6.71 -0.10 -11.32 16 11 N -0.60 -10.24 3.10 -175.76 -0.54 -10.78 16 12 C 0.07 0.96 9.42 59.85 0.56 1.52 16 13 C 0.09 1.94 4.43 -70.16 -0.31 1.62 16 14 C 0.15 3.68 7.10 -2.97 -0.02 3.66 16 15 N -0.61 -16.00 3.70 -178.12 -0.66 -16.65 16 16 C -0.22 -6.40 10.70 -15.05 -0.16 -6.56 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 19 N -0.92 -27.65 11.35 55.49 0.63 -27.02 16 20 Si 0.91 22.44 29.56 -169.99 -5.02 17.41 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.11 2.33 8.52 -2.98 -0.03 2.31 16 25 O -0.35 -5.11 10.05 -47.49 -0.48 -5.58 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.51 7.85 -51.93 -0.41 0.10 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.98 7.42 -51.93 -0.39 0.59 16 34 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 35 H 0.05 0.61 7.98 -51.93 -0.41 0.20 16 36 H 0.07 0.65 6.26 -51.93 -0.33 0.32 16 37 H 0.08 1.17 5.83 -51.93 -0.30 0.86 16 38 H 0.12 2.68 7.19 -51.93 -0.37 2.30 16 39 H 0.03 0.71 5.94 -51.93 -0.31 0.40 16 40 H 0.08 2.14 7.06 -51.93 -0.37 1.78 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.03 0.68 7.38 -51.93 -0.38 0.30 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -34.73 341.03 -8.45 -43.18 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.02 Total: -1.32 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.39 Total: 6.94 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.57 Total: -54.45 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.58 Total: -16.90 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.73 -8.45 -43.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043746937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.742 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds