Wall clock time and date at job start Tue Mar 31 2020 02:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.33702 * 2 1 4 4 C 1.54476 * 110.46501 * 237.68427 * 2 1 3 5 5 C 1.54688 * 104.07697 * 217.05286 * 4 2 1 6 6 C 1.54478 * 103.98203 * 0.13244 * 5 4 2 7 7 H 1.08997 * 110.37692 * 264.96503 * 6 5 4 8 8 C 1.52998 * 110.37280 * 142.73537 * 6 5 4 9 9 C 1.50698 * 109.47169 * 176.55201 * 8 6 5 10 10 O 1.21279 * 119.99908 * 0.02562 * 9 8 6 11 11 N 1.34776 * 119.99967 * 180.02562 * 9 8 6 12 12 C 1.46502 * 120.00386 * 0.02562 * 11 9 8 13 13 C 1.46503 * 120.00035 * 179.97438 * 11 9 8 14 14 C 1.53950 * 113.74146 * 141.26178 * 13 11 9 15 15 N 1.47805 * 86.03824 * 90.88395 * 14 13 11 16 16 C 1.36942 * 134.45487 * 204.64668 * 15 14 13 17 17 H 1.08002 * 119.99602 * 179.86453 * 16 15 14 18 18 C 1.38807 * 120.00184 * 359.86555 * 16 15 14 19 19 N 1.31617 * 119.99858 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00250 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46605 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47103 * 119.99755 * 20 18 16 23 23 H 1.48496 * 109.47077 * 240.00020 * 20 18 16 24 24 C 1.47582 * 91.05413 * 24.54887 * 15 14 13 25 25 O 1.44422 * 104.89973 * 23.85459 * 6 5 4 26 26 H 1.09006 * 109.47278 * 299.20696 * 1 2 3 27 27 H 1.08995 * 109.47330 * 59.20283 * 1 2 3 28 28 H 1.08999 * 109.47520 * 179.21066 * 1 2 3 29 29 H 1.09001 * 110.51106 * 335.78621 * 4 2 1 30 30 H 1.08998 * 110.51486 * 98.36469 * 4 2 1 31 31 H 1.09007 * 110.61015 * 241.48816 * 5 4 2 32 32 H 1.09002 * 110.49491 * 118.72782 * 5 4 2 33 33 H 1.09005 * 109.46776 * 56.55397 * 8 6 5 34 34 H 1.09004 * 109.47561 * 296.55874 * 8 6 5 35 35 H 1.09004 * 109.46515 * 270.00342 * 12 11 9 36 36 H 1.09004 * 109.47024 * 29.99351 * 12 11 9 37 37 H 1.08994 * 109.47849 * 150.00001 * 12 11 9 38 38 H 1.09002 * 112.94232 * 9.66853 * 13 11 9 39 39 H 1.08999 * 113.76704 * 205.15172 * 14 13 11 40 40 H 1.09002 * 113.76463 * 336.53966 * 14 13 11 41 41 H 0.97002 * 120.00155 * 180.02562 * 19 18 16 42 42 H 1.08999 * 113.77186 * 221.15323 * 24 15 14 43 43 H 1.09004 * 113.76624 * 89.74800 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0700 -0.7737 -1.2231 5 6 3.3235 -1.5024 -0.6839 6 6 3.3882 -1.0840 0.8018 7 1 4.0523 -0.2287 0.9266 8 6 3.8618 -2.2551 1.6648 9 6 3.9987 -1.8018 3.0954 10 8 3.7422 -0.6550 3.3953 11 7 4.4062 -2.6708 4.0417 12 6 4.7166 -4.0559 3.6794 13 6 4.5398 -2.2299 5.4324 14 6 4.0839 -3.2797 6.4619 15 7 5.4861 -3.7469 6.4539 16 6 6.1027 -4.9354 6.7413 17 1 7.1756 -5.0223 6.6528 18 6 5.3489 -6.0282 7.1464 19 7 4.0414 -5.9224 7.2537 20 14 6.1901 -7.6492 7.5392 21 1 7.6550 -7.5074 7.3408 22 1 5.9148 -8.0206 8.9503 23 1 5.6693 -8.7083 6.6379 24 6 5.9543 -2.4197 6.0096 25 8 2.0328 -0.7224 1.1451 26 1 -0.3634 0.5015 0.8970 27 1 -0.3634 0.5261 -0.8827 28 1 -0.3634 -1.0275 -0.0142 29 1 1.3313 -1.4929 -1.5768 30 1 2.3427 -0.0837 -2.0216 31 1 4.2171 -1.1714 -1.2131 32 1 3.2045 -2.5823 -0.7717 33 1 4.8273 -2.6072 1.3012 34 1 3.1349 -3.0655 1.6083 35 1 3.8165 -4.6646 3.7666 36 1 5.0801 -4.0901 2.6523 37 1 5.4838 -4.4436 4.3495 38 1 4.1250 -1.2368 5.6050 39 1 3.7683 -2.8531 7.4140 40 1 3.3752 -4.0062 6.0641 41 1 3.5146 -6.6860 7.5371 42 1 6.7364 -2.4608 5.2514 43 1 6.1894 -1.7399 6.8287 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043746939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:34 Heat of formation + Delta-G solvation = -21.814672 kcal Electronic energy + Delta-G solvation = -23019.926822 eV Core-core repulsion = 19681.313657 eV Total energy + Delta-G solvation = -3338.613165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.04846 -39.16503 -37.42768 -33.92219 -32.82701 -32.24330 -31.95890 -29.31282 -27.77701 -25.97383 -24.78778 -24.74622 -22.90641 -21.65601 -20.93639 -19.79950 -18.06675 -17.06942 -16.64433 -16.21867 -16.05755 -15.50017 -14.92562 -14.74847 -14.67288 -13.88814 -13.73108 -13.49711 -13.07920 -12.74200 -12.57905 -12.46733 -12.24668 -12.04634 -11.84518 -11.67881 -11.47388 -11.27909 -11.20738 -11.10869 -10.93481 -10.88908 -10.74133 -10.55502 -10.11095 -9.74075 -9.66008 -9.52433 -9.32119 -8.79607 -7.89565 -6.87549 -5.79654 -3.12831 3.11308 3.35533 3.41931 3.44146 3.53419 3.79990 4.42498 4.45517 4.52983 4.78983 4.85051 5.00860 5.13790 5.17153 5.24636 5.34674 5.38371 5.44336 5.47120 5.59981 5.60644 5.63740 5.71628 5.79968 5.90985 5.94199 6.01571 6.06995 6.19024 6.25998 6.33679 6.49915 6.58058 6.78958 6.95719 7.01207 7.21936 7.37232 7.57437 7.93478 8.08974 8.71771 9.01197 9.67376 10.57035 11.36456 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030551 B = 0.003640 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.283885 B = 7691.280672 C = 7904.690512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.150 4.150 5 C -0.153 4.153 6 C 0.094 3.906 7 H 0.074 0.926 8 C -0.134 4.134 9 C 0.511 3.489 10 O -0.546 6.546 11 N -0.581 5.581 12 C 0.075 3.925 13 C 0.089 3.911 14 C 0.153 3.847 15 N -0.609 5.609 16 C -0.225 4.225 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.917 5.917 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.106 3.894 25 O -0.352 6.352 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.036 0.964 40 H 0.079 0.921 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 8.281 -17.097 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.083 0.917 4 C -0.188 4.188 5 C -0.191 4.191 6 C 0.035 3.965 7 H 0.092 0.908 8 C -0.173 4.173 9 C 0.299 3.701 10 O -0.424 6.424 11 N -0.312 5.312 12 C -0.068 4.068 13 C -0.016 4.016 14 C 0.027 3.973 15 N -0.336 5.336 16 C -0.352 4.352 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.564 5.564 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C -0.021 4.021 25 O -0.271 6.271 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.072 8.477 -16.634 18.921 hybrid contribution 0.582 -1.063 0.295 1.247 sum -2.489 7.414 -16.339 18.115 Atomic orbital electron populations 1.21781 0.93433 1.02786 1.02266 1.22937 0.95222 0.95600 0.85346 0.91665 1.23025 0.97682 0.99756 0.98360 1.23053 0.98468 1.01622 0.95916 1.22658 0.85588 0.96365 0.91851 0.90761 1.21779 1.03412 0.99153 0.93003 1.20418 0.76941 0.85563 0.87214 1.90658 1.50422 1.18840 1.82456 1.47435 1.65077 1.11267 1.07410 1.21965 1.03222 0.81454 1.00142 1.22876 0.98288 0.98937 0.81503 1.22662 0.89378 0.91870 0.93398 1.46220 1.03097 1.05050 1.79232 1.19040 0.91446 0.85593 1.39168 0.90291 1.24761 0.95617 0.98039 1.01741 1.69833 1.03865 1.29977 1.52688 0.86109 0.78443 0.83804 0.77770 1.20525 1.21815 1.21711 1.23010 0.95022 0.88327 0.95763 1.89281 1.26229 1.74251 1.37358 0.91761 0.91495 0.91885 0.90654 0.90833 0.90486 0.90420 0.87875 0.88254 0.92967 0.93209 0.87011 0.88926 0.94584 0.90324 0.93671 0.93686 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.53 37.15 0.35 -1.02 16 2 C 0.07 0.74 3.92 -25.96 -0.10 0.64 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.15 -1.30 6.64 -25.07 -0.17 -1.47 16 5 C -0.15 -1.40 6.65 -25.07 -0.17 -1.57 16 6 C 0.09 1.20 2.75 -25.96 -0.07 1.13 16 7 H 0.07 1.01 7.96 -51.93 -0.41 0.59 16 8 C -0.13 -1.78 3.89 -27.88 -0.11 -1.88 16 9 C 0.51 9.17 7.59 -10.99 -0.08 9.08 16 10 O -0.55 -11.48 15.05 -3.89 -0.06 -11.54 16 11 N -0.58 -10.93 3.09 -175.73 -0.54 -11.48 16 12 C 0.07 1.33 9.23 59.85 0.55 1.89 16 13 C 0.09 1.82 4.52 -70.14 -0.32 1.51 16 14 C 0.15 3.61 6.77 -2.84 -0.02 3.59 16 15 N -0.61 -14.98 2.30 -177.87 -0.41 -15.39 16 16 C -0.23 -6.00 9.77 -15.06 -0.15 -6.15 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 19 N -0.92 -26.18 11.39 55.49 0.63 -25.55 16 20 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.11 2.20 8.35 -2.96 -0.02 2.18 16 25 O -0.35 -5.31 10.51 -44.68 -0.47 -5.78 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.07 0.60 7.87 -51.93 -0.41 0.20 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 33 H 0.10 1.10 7.40 -51.93 -0.38 0.72 16 34 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 37 H 0.11 2.36 5.34 -51.93 -0.28 2.08 16 38 H 0.09 1.90 7.22 -51.93 -0.37 1.53 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 2.04 6.90 -51.93 -0.36 1.68 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 340.96 15.07 5.14 5.14 Total: -1.00 -31.79 340.96 -8.28 -40.07 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.15 Total: 0.43 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.39 Total: 7.71 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.32 Total: -52.41 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.53 Total: -17.32 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.79 -8.28 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043746939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.255 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds