Wall clock time and date at job start Tue Mar 31 2020 01:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00028 * 2 1 4 4 O 1.21273 * 120.00295 * 5.39579 * 3 2 1 5 5 C 1.50699 * 119.99927 * 185.39829 * 3 2 1 6 6 C 1.53005 * 109.54500 * 60.90569 * 5 3 2 7 7 C 1.53179 * 109.54667 * 300.63666 * 5 3 2 8 8 C 1.53089 * 109.16546 * 297.11785 * 7 5 3 9 9 O 1.42907 * 109.41155 * 302.38920 * 8 7 5 10 10 C 1.42904 * 114.10075 * 61.15688 * 9 8 7 11 11 C 1.53091 * 109.41229 * 298.84527 * 10 9 8 12 12 C 1.46506 * 119.99921 * 179.97438 * 2 1 3 13 13 C 1.53487 * 114.20698 * 299.27214 * 12 2 1 14 14 N 1.47071 * 87.98461 * 87.52087 * 13 12 2 15 15 C 1.36938 * 136.05736 * 207.08562 * 14 13 12 16 16 H 1.07996 * 120.00094 * 356.49593 * 15 14 13 17 17 C 1.38813 * 119.99884 * 176.77497 * 15 14 13 18 18 N 1.31624 * 119.99696 * 5.93678 * 17 15 14 19 19 Si 1.86796 * 120.00097 * 185.93543 * 17 15 14 20 20 H 1.48495 * 109.47312 * 94.98897 * 19 17 15 21 21 H 1.48507 * 109.47064 * 214.99092 * 19 17 15 22 22 H 1.48504 * 109.47048 * 334.98749 * 19 17 15 23 23 C 1.47070 * 87.88189 * 27.34328 * 14 13 12 24 24 H 1.08997 * 109.46945 * 266.64559 * 1 2 3 25 25 H 1.08996 * 109.46907 * 26.64120 * 1 2 3 26 26 H 1.09005 * 109.46939 * 146.64535 * 1 2 3 27 27 H 1.09004 * 109.47014 * 70.43077 * 6 5 3 28 28 H 1.09001 * 109.47333 * 190.42757 * 6 5 3 29 29 H 1.08998 * 109.47330 * 310.43096 * 6 5 3 30 30 H 1.09004 * 109.51871 * 57.01993 * 7 5 3 31 31 H 1.08996 * 109.52476 * 177.20409 * 7 5 3 32 32 H 1.08994 * 109.48147 * 182.40126 * 8 7 5 33 33 H 1.09002 * 109.49076 * 62.37238 * 8 7 5 34 34 H 1.08997 * 109.48031 * 178.85678 * 10 9 8 35 35 H 1.09003 * 109.48588 * 58.83081 * 10 9 8 36 36 H 1.09000 * 109.52099 * 297.69938 * 11 10 9 37 37 H 1.09005 * 109.52216 * 177.51614 * 11 10 9 38 38 H 1.09004 * 113.41004 * 166.07112 * 12 2 1 39 39 H 1.09002 * 113.47157 * 332.74037 * 13 12 2 40 40 H 1.09004 * 113.46941 * 202.29866 * 13 12 2 41 41 H 0.97000 * 119.99436 * 179.97438 * 18 17 15 42 42 H 1.08996 * 113.46928 * 87.44299 * 23 14 13 43 43 H 1.09003 * 113.46258 * 217.87799 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5366 2.2152 0.0988 5 6 3.6408 1.1701 -0.1228 6 6 4.0470 0.5300 -1.4518 7 6 4.2514 0.3778 1.0374 8 6 3.9035 1.0709 2.3573 9 8 4.3843 2.4163 2.3285 10 6 3.8124 3.2183 1.2932 11 6 4.1566 2.6114 -0.0695 12 6 2.1975 -1.2688 0.0006 13 6 1.9194 -2.1555 1.2221 14 7 0.7794 -2.7225 0.4860 15 6 -0.4194 -3.2969 0.8149 16 1 -0.6724 -3.4625 1.8517 17 6 -1.3069 -3.6717 -0.1845 18 7 -0.9501 -3.5836 -1.4484 19 14 -3.0075 -4.3009 0.2643 20 1 -3.9791 -3.1790 0.2161 21 1 -3.4170 -5.3522 -0.7013 22 1 -2.9782 -4.8719 1.6348 23 6 1.4964 -2.4072 -0.7588 24 1 -0.3633 -0.0601 1.0259 25 1 -0.3633 0.9185 -0.4608 26 1 -0.3633 -0.8584 -0.5651 27 1 3.7751 1.1935 -2.2728 28 1 5.1242 0.3635 -1.4608 29 1 3.5311 -0.4230 -1.5688 30 1 3.8470 -0.6344 1.0398 31 1 5.3344 0.3380 0.9212 32 1 4.3711 0.5353 3.1834 33 1 2.8218 1.0743 2.4922 34 1 4.2144 4.2297 1.3528 35 1 2.7295 3.2499 1.4140 36 1 5.2377 2.6168 -0.2080 37 1 3.6845 3.1967 -0.8586 38 1 3.2549 -1.1585 -0.2403 39 1 1.6270 -1.5934 2.1091 40 1 2.7098 -2.8789 1.4224 41 1 -1.5701 -3.8458 -2.1467 42 1 2.1753 -3.1968 -1.0807 43 1 0.8437 -2.0594 -1.5595 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044051396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:07 Heat of formation + Delta-G solvation = 0.931382 kcal Electronic energy + Delta-G solvation = -24583.390167 eV Core-core repulsion = 21245.763345 eV Total energy + Delta-G solvation = -3337.626822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08353 -38.71402 -37.55504 -34.90701 -33.77100 -32.05478 -31.03581 -28.56034 -27.91343 -26.51116 -24.74754 -24.13059 -23.38618 -22.80331 -21.39175 -19.93715 -18.23890 -16.82612 -16.26537 -16.11011 -15.90135 -15.32518 -15.17931 -14.74090 -14.61234 -14.18880 -14.02530 -13.64768 -13.07111 -12.81824 -12.75105 -12.59509 -12.22291 -11.97816 -11.86238 -11.83702 -11.50457 -11.38704 -11.15261 -10.95875 -10.88052 -10.70443 -10.45511 -10.41744 -10.11938 -9.94174 -9.56532 -9.37714 -9.12719 -8.85678 -7.99874 -7.01673 -5.89001 -3.21055 2.91147 3.32982 3.38963 3.40560 3.44403 3.97437 4.35571 4.49596 4.59667 4.80791 5.00609 5.04454 5.08898 5.18964 5.32001 5.34001 5.50039 5.59341 5.63023 5.65507 5.72918 5.77228 5.80829 5.93923 5.98853 6.06395 6.08391 6.15470 6.22487 6.27886 6.31148 6.41110 6.47401 6.75678 6.97052 7.02142 7.10386 7.28725 7.40601 7.84137 7.98901 8.54521 8.92200 9.58626 10.49388 11.28042 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030234 B = 0.005041 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.890123 B = 5553.120859 C = 5561.528045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.569 5.569 3 C 0.519 3.481 4 O -0.552 6.552 5 C -0.080 4.080 6 C -0.153 4.153 7 C -0.163 4.163 8 C 0.061 3.939 9 O -0.387 6.387 10 C 0.050 3.950 11 C -0.125 4.125 12 C 0.055 3.945 13 C 0.102 3.898 14 N -0.602 5.602 15 C -0.217 4.217 16 H 0.081 0.919 17 C -0.004 4.004 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.142 3.858 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.255 0.745 42 H 0.037 0.963 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.720 8.129 1.681 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.299 5.299 3 C 0.307 3.693 4 O -0.431 6.431 5 C -0.084 4.084 6 C -0.210 4.210 7 C -0.200 4.200 8 C -0.016 4.016 9 O -0.306 6.306 10 C -0.027 4.027 11 C -0.163 4.163 12 C -0.050 4.050 13 C -0.026 4.026 14 N -0.328 5.328 15 C -0.344 4.344 16 H 0.098 0.902 17 C -0.201 4.201 18 N -0.566 5.566 19 Si 0.740 3.260 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.016 3.984 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.154 8.570 1.802 14.181 hybrid contribution -1.102 -0.835 -0.047 1.383 sum 10.052 7.735 1.755 12.805 Atomic orbital electron populations 1.21709 0.77914 1.03073 1.02314 1.47331 1.07484 1.04513 1.70543 1.20380 0.89259 0.83401 0.76240 1.90592 1.70307 1.31195 1.51056 1.20801 0.92416 0.97671 0.97476 1.22133 1.02110 1.01904 0.94859 1.22760 1.02028 1.00979 0.94261 1.22536 0.99018 0.82898 0.97131 1.87861 1.67534 1.22213 1.53014 1.22807 0.99974 0.93812 0.86077 1.21999 1.00936 0.94159 0.99243 1.23407 0.95738 0.84768 1.01131 1.22889 0.91249 0.93458 0.94968 1.45661 1.14057 1.71157 1.01973 1.18906 0.89511 1.33446 0.92551 0.90166 1.24751 0.98526 1.01576 0.95201 1.69814 1.35130 1.53307 0.98320 0.86130 0.84257 0.78206 0.77361 1.21433 1.21715 1.20637 1.22564 0.92686 0.90598 0.92600 0.93365 0.92654 0.87749 0.91953 0.91454 0.90307 0.88264 0.90118 0.88744 0.93228 0.89464 0.90654 0.90870 0.90364 0.86985 0.93832 0.93959 0.93520 0.94501 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.85 9.46 59.85 0.57 2.42 16 2 N -0.57 -10.18 3.11 -173.56 -0.54 -10.72 16 3 C 0.52 8.79 5.12 -10.99 -0.06 8.74 16 4 O -0.55 -10.78 13.46 5.56 0.07 -10.71 16 5 C -0.08 -1.06 0.50 -155.48 -0.08 -1.14 16 6 C -0.15 -1.76 8.11 37.16 0.30 -1.45 16 7 C -0.16 -1.95 4.53 -26.59 -0.12 -2.07 16 8 C 0.06 0.80 6.62 37.20 0.25 1.05 16 9 O -0.39 -5.52 10.77 -35.23 -0.38 -5.90 16 10 C 0.05 0.67 6.55 37.20 0.24 0.92 16 11 C -0.13 -1.56 4.54 -26.59 -0.12 -1.68 16 12 C 0.05 0.92 2.22 -67.68 -0.15 0.77 16 13 C 0.10 1.88 7.66 -8.51 -0.07 1.81 16 14 N -0.60 -13.93 2.51 -184.62 -0.46 -14.39 16 15 C -0.22 -5.64 10.51 -15.06 -0.16 -5.80 16 16 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 17 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 18 N -0.92 -25.41 11.52 55.49 0.64 -24.77 16 19 Si 0.91 21.23 29.56 -169.99 -5.02 16.21 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 C 0.14 2.97 6.46 -8.37 -0.05 2.92 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 1.09 7.40 -51.93 -0.38 0.70 16 26 H 0.10 2.41 5.63 -51.93 -0.29 2.12 16 27 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 28 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 29 H 0.08 0.97 5.08 -51.93 -0.26 0.71 16 30 H 0.10 1.20 3.90 -51.93 -0.20 0.99 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.75 7.38 -51.93 -0.38 0.37 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.20 5.84 -51.93 -0.30 0.90 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.99 8.01 -51.93 -0.42 0.58 16 38 H 0.11 1.55 3.12 -51.93 -0.16 1.38 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.88 6.14 -51.93 -0.32 1.56 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -29.49 320.04 -6.91 -36.40 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.50 Total: 2.78 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 0.46 Total: 6.29 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.36 Total: -49.88 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.30 Total: -16.61 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.49 -6.91 -36.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044051396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.331 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds