Wall clock time and date at job start Tue Mar 31 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34775 * 120.00552 * 2 1 4 4 O 1.21283 * 119.99875 * 5.64740 * 3 2 1 5 5 C 1.50700 * 120.00170 * 185.65231 * 3 2 1 6 6 C 1.53006 * 109.51864 * 301.05191 * 5 3 2 7 7 C 1.53177 * 109.52054 * 180.92742 * 5 3 2 8 8 C 1.53174 * 109.03779 * 297.07224 * 7 5 3 9 9 C 1.53099 * 109.16277 * 303.02316 * 8 7 5 10 10 O 1.42899 * 109.41576 * 57.60427 * 9 8 7 11 11 C 1.42903 * 114.10315 * 298.84560 * 10 9 8 12 12 C 1.46507 * 119.99424 * 180.02562 * 2 1 3 13 13 C 1.53496 * 114.20711 * 295.92245 * 12 2 1 14 14 N 1.47067 * 87.98553 * 87.51980 * 13 12 2 15 15 C 1.36934 * 136.06035 * 207.08124 * 14 13 12 16 16 H 1.08002 * 120.00020 * 6.42250 * 15 14 13 17 17 C 1.38807 * 120.00328 * 186.41623 * 15 14 13 18 18 N 1.31625 * 119.99791 * 22.72518 * 17 15 14 19 19 Si 1.86802 * 120.00282 * 202.72968 * 17 15 14 20 20 H 1.48506 * 109.47038 * 89.99410 * 19 17 15 21 21 H 1.48501 * 109.46918 * 329.99852 * 19 17 15 22 22 H 1.48492 * 109.47153 * 209.99855 * 19 17 15 23 23 C 1.47072 * 87.88224 * 27.34090 * 14 13 12 24 24 H 1.09007 * 109.46975 * 274.61210 * 1 2 3 25 25 H 1.08998 * 109.47030 * 34.60272 * 1 2 3 26 26 H 1.08994 * 109.47364 * 154.60811 * 1 2 3 27 27 H 1.09001 * 109.47001 * 67.14589 * 6 5 3 28 28 H 1.09004 * 109.46754 * 187.14556 * 6 5 3 29 29 H 1.09001 * 109.47160 * 307.14395 * 6 5 3 30 30 H 1.09003 * 109.54156 * 56.94191 * 7 5 3 31 31 H 1.09004 * 109.54265 * 177.11611 * 7 5 3 32 32 H 1.09001 * 109.52245 * 62.92287 * 8 7 5 33 33 H 1.08996 * 109.52191 * 183.05508 * 8 7 5 34 34 H 1.09000 * 109.48066 * 177.59292 * 9 8 7 35 35 H 1.08999 * 109.47709 * 297.61655 * 9 8 7 36 36 H 1.08999 * 109.47691 * 301.17631 * 11 10 9 37 37 H 1.08993 * 109.48718 * 181.13788 * 11 10 9 38 38 H 1.08996 * 113.27969 * 162.85928 * 12 2 1 39 39 H 1.09000 * 113.46436 * 332.74091 * 13 12 2 40 40 H 1.08996 * 113.46738 * 202.30083 * 13 12 2 41 41 H 0.96998 * 120.00102 * 6.05628 * 18 17 15 42 42 H 1.09004 * 113.46665 * 87.43645 * 23 14 13 43 43 H 1.09000 * 113.46848 * 217.87106 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5371 2.2150 0.1034 5 6 3.6405 1.1702 -0.1285 6 6 4.2536 0.3674 1.0207 7 6 4.1556 2.6119 -0.0778 8 6 3.5957 3.3849 -1.2758 9 6 3.9977 2.6693 -2.5681 10 8 3.5142 1.3250 -2.5369 11 6 4.0409 0.5401 -1.4651 12 6 2.1974 -1.2689 -0.0006 13 6 1.9820 -2.1205 1.2582 14 7 0.8066 -2.7072 0.5971 15 6 -0.3736 -3.2711 1.0023 16 1 -0.6455 -3.2622 2.0475 17 6 -1.2206 -3.8540 0.0699 18 7 -0.7423 -4.2716 -1.0831 19 14 -3.0392 -4.0458 0.4512 20 1 -3.7712 -2.8377 -0.0074 21 1 -3.2232 -4.2098 1.9156 22 1 -3.5688 -5.2420 -0.2514 23 6 1.4595 -2.4277 -0.6908 24 1 -0.3633 0.0826 1.0244 25 1 -0.3633 0.8459 -0.5836 26 1 -0.3634 -0.9283 -0.4406 27 1 3.9905 -0.6846 0.9099 28 1 5.3382 0.4748 1.0008 29 1 3.8690 0.7402 1.9700 30 1 3.8261 3.0845 0.8475 31 1 5.2449 2.6116 -0.1193 32 1 2.5087 3.4274 -1.2061 33 1 4.0004 4.3969 -1.2777 34 1 3.5660 3.1912 -3.4221 35 1 5.0841 2.6630 -2.6572 36 1 5.1277 0.5058 -1.5397 37 1 3.6402 -0.4718 -1.5244 38 1 3.2414 -1.1635 -0.2956 39 1 1.7346 -1.5332 2.1424 40 1 2.7820 -2.8384 1.4386 41 1 0.2135 -4.2531 -1.2470 42 1 2.1218 -3.2267 -1.0241 43 1 0.7669 -2.1023 -1.4670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044101589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:34 Heat of formation + Delta-G solvation = 1.563976 kcal Electronic energy + Delta-G solvation = -24524.176943 eV Core-core repulsion = 21186.577552 eV Total energy + Delta-G solvation = -3337.599391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.07420 -38.90352 -37.66348 -34.59180 -34.09211 -32.18345 -32.01541 -27.84887 -27.08782 -26.53398 -25.19793 -24.86856 -23.71016 -22.33286 -21.32606 -19.98799 -18.34930 -17.42095 -16.89760 -16.15928 -15.71823 -15.34273 -15.17476 -14.62988 -14.36571 -14.15421 -13.98520 -13.91247 -13.41469 -13.06653 -12.93559 -12.66731 -12.30769 -12.15941 -12.01501 -11.89686 -11.69327 -11.19088 -11.07380 -10.98058 -10.83777 -10.70624 -10.48257 -10.23560 -10.09744 -9.93251 -9.62441 -9.46058 -9.16616 -8.62089 -8.06665 -7.12040 -6.19409 -3.19566 2.90960 3.37937 3.47783 3.50588 3.65670 3.84691 4.41146 4.46058 4.55877 4.72910 4.88583 4.92036 5.02119 5.06489 5.16017 5.27317 5.31598 5.38001 5.46127 5.50419 5.58893 5.65891 5.73464 5.81885 5.87525 5.91075 6.08397 6.12430 6.18249 6.19918 6.31392 6.36946 6.44363 6.56953 6.62830 6.79902 6.99823 7.14521 7.19570 7.92367 8.25672 8.54281 8.83295 9.67759 10.40323 11.20703 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028925 B = 0.005080 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.802704 B = 5510.728850 C = 5598.452871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.572 5.572 3 C 0.532 3.468 4 O -0.546 6.546 5 C -0.116 4.116 6 C -0.157 4.157 7 C -0.092 4.092 8 C -0.167 4.167 9 C 0.059 3.941 10 O -0.374 6.374 11 C 0.062 3.938 12 C 0.069 3.931 13 C 0.103 3.897 14 N -0.608 5.608 15 C -0.317 4.317 16 H 0.075 0.925 17 C -0.028 4.028 18 N -0.926 5.926 19 Si 1.071 2.929 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.289 1.289 23 C 0.120 3.880 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.265 0.735 42 H 0.045 0.955 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.963 11.080 0.230 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.302 5.302 3 C 0.320 3.680 4 O -0.425 6.425 5 C -0.120 4.120 6 C -0.214 4.214 7 C -0.130 4.130 8 C -0.205 4.205 9 C -0.018 4.018 10 O -0.292 6.292 11 C -0.015 4.015 12 C -0.037 4.037 13 C -0.024 4.024 14 N -0.335 5.335 15 C -0.443 4.443 16 H 0.093 0.907 17 C -0.228 4.228 18 N -0.567 5.567 19 Si 0.900 3.100 20 H -0.219 1.219 21 H -0.219 1.219 22 H -0.215 1.215 23 C -0.007 4.007 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.752 10.950 -0.367 15.351 hybrid contribution 1.777 0.282 1.039 2.078 sum 12.530 11.232 0.672 16.840 Atomic orbital electron populations 1.21651 0.78015 1.03312 1.01614 1.47283 1.07383 1.04393 1.71113 1.20072 0.88821 0.83239 0.75841 1.90575 1.70161 1.31101 1.50653 1.21456 0.93683 0.98715 0.98141 1.22230 1.00853 1.01231 0.97109 1.21390 0.99199 0.92649 0.99746 1.22394 1.04888 0.98704 0.94465 1.22618 0.97844 0.83092 0.98229 1.88017 1.69708 1.22773 1.48685 1.23008 0.98416 0.95609 0.84478 1.23239 0.95378 0.84648 1.00412 1.22882 0.90738 0.93621 0.95203 1.45998 1.14595 1.71575 1.01346 1.19768 0.93070 1.36049 0.95418 0.90749 1.25730 1.05366 0.96805 0.94907 1.70758 1.15528 1.44591 1.25862 0.83412 0.75246 0.76633 0.74670 1.21872 1.21948 1.21519 1.22673 0.94116 0.92032 0.91853 0.93277 0.92693 0.88386 0.89942 0.91536 0.91673 0.90880 0.91628 0.88377 0.91341 0.89105 0.93588 0.92211 0.87288 0.87306 0.93566 0.94180 0.92373 0.93782 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.96 9.52 59.85 0.57 2.53 16 2 N -0.57 -10.49 3.11 -173.55 -0.54 -11.03 16 3 C 0.53 9.25 5.90 -10.99 -0.06 9.18 16 4 O -0.55 -10.90 13.52 5.55 0.08 -10.82 16 5 C -0.12 -1.53 0.50 -155.52 -0.08 -1.60 16 6 C -0.16 -1.73 8.05 37.16 0.30 -1.43 16 7 C -0.09 -1.09 4.45 -26.55 -0.12 -1.21 16 8 C -0.17 -2.05 5.81 -26.59 -0.15 -2.20 16 9 C 0.06 0.68 6.84 37.21 0.25 0.94 16 10 O -0.37 -5.46 10.45 -35.23 -0.37 -5.83 16 11 C 0.06 0.77 5.24 37.21 0.19 0.97 16 12 C 0.07 1.17 2.49 -67.68 -0.17 1.00 16 13 C 0.10 1.96 7.73 -8.51 -0.07 1.89 16 14 N -0.61 -14.42 2.45 -184.62 -0.45 -14.87 16 15 C -0.32 -8.54 10.27 -15.06 -0.15 -8.69 16 16 H 0.07 2.02 7.93 -52.49 -0.42 1.61 16 17 C -0.03 -0.77 5.42 -17.43 -0.09 -0.86 16 18 N -0.93 -27.33 13.29 55.49 0.74 -26.60 16 19 Si 1.07 25.05 29.98 -169.99 -5.10 19.95 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.12 2.53 5.23 -8.37 -0.04 2.48 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 26 H 0.10 2.26 5.22 -51.93 -0.27 1.98 16 27 H 0.08 0.93 4.08 -51.93 -0.21 0.72 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 30 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.54 5.78 -51.93 -0.30 1.24 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.11 1.42 4.96 -51.93 -0.26 1.16 16 38 H 0.11 1.51 2.81 -51.93 -0.15 1.36 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.27 7.75 6.25 -40.82 -0.26 7.50 16 42 H 0.04 0.91 8.02 -51.93 -0.42 0.49 16 43 H 0.06 1.43 6.97 -51.93 -0.36 1.07 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -31.97 320.70 -6.91 -38.88 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.47 Total: 2.49 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 0.37 Total: 2.99 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.25 Total: -52.49 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.29 Total: -16.65 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.10 Total: 19.95 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.97 -6.91 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044101589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.441 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds