Wall clock time and date at job start Tue Mar 31 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34775 * 120.00094 * 2 1 4 4 O 1.21286 * 119.99765 * 4.80300 * 3 2 1 5 5 C 1.50699 * 119.99820 * 184.80846 * 3 2 1 6 6 C 1.52995 * 109.57684 * 59.38889 * 5 3 2 7 7 C 1.53177 * 109.51969 * 179.54583 * 5 3 2 8 8 C 1.53184 * 109.10972 * 62.96954 * 7 5 3 9 9 C 1.53089 * 109.16214 * 56.93536 * 8 7 5 10 10 O 1.42904 * 109.41600 * 302.38903 * 9 8 7 11 11 C 1.42902 * 114.09498 * 61.16048 * 10 9 8 12 12 C 1.46498 * 119.99803 * 180.02562 * 2 1 3 13 13 C 1.53944 * 113.74429 * 35.94804 * 12 2 1 14 14 N 1.47579 * 86.12049 * 222.04685 * 13 12 2 15 15 C 1.36929 * 134.49580 * 204.63833 * 14 13 12 16 16 H 1.07999 * 120.00086 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00167 * 0.02562 * 15 14 13 18 18 N 1.31621 * 119.99835 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00175 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47190 * 60.00049 * 19 17 15 21 21 H 1.48506 * 109.46799 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47030 * 299.99578 * 19 17 15 23 23 C 1.47588 * 91.01039 * 24.64427 * 14 13 12 24 24 H 1.09000 * 109.47498 * 90.63993 * 1 2 3 25 25 H 1.08997 * 109.47240 * 210.64019 * 1 2 3 26 26 H 1.08997 * 109.47114 * 330.63634 * 1 2 3 27 27 H 1.08995 * 109.47319 * 191.12732 * 6 5 3 28 28 H 1.09001 * 109.47319 * 311.12593 * 6 5 3 29 29 H 1.08999 * 109.47103 * 71.12821 * 6 5 3 30 30 H 1.08995 * 109.54520 * 303.05457 * 7 5 3 31 31 H 1.09005 * 109.54307 * 182.87961 * 7 5 3 32 32 H 1.08997 * 109.51882 * 176.83859 * 8 7 5 33 33 H 1.09000 * 109.51822 * 297.02489 * 8 7 5 34 34 H 1.08997 * 109.48435 * 62.37507 * 9 8 7 35 35 H 1.09004 * 109.47619 * 182.40743 * 9 8 7 36 36 H 1.08997 * 109.48436 * 58.82567 * 11 10 9 37 37 H 1.09000 * 109.48140 * 178.84708 * 11 10 9 38 38 H 1.08998 * 112.94342 * 167.68706 * 12 2 1 39 39 H 1.08996 * 113.77062 * 336.35693 * 13 12 2 40 40 H 1.09001 * 113.76640 * 107.75087 * 13 12 2 41 41 H 0.97002 * 120.00090 * 179.97438 * 18 17 15 42 42 H 1.09004 * 113.76556 * 221.05211 * 23 14 13 43 43 H 1.09001 * 113.87390 * 89.67645 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5356 2.2157 0.0879 5 6 3.6419 1.1694 -0.1094 6 6 4.0620 0.4888 -1.4136 7 6 4.1538 2.6131 -0.0975 8 6 3.7969 3.2606 1.2441 9 6 4.3915 2.4240 2.3799 10 8 3.8969 1.0860 2.2935 11 6 4.2408 0.4141 1.0801 12 6 2.1975 -1.2687 -0.0006 13 6 1.5194 -2.3755 -0.8283 14 7 1.8711 -3.2822 0.2817 15 6 2.0778 -4.6315 0.3900 16 1 2.3326 -5.0637 1.3464 17 6 1.9597 -5.4439 -0.7294 18 7 1.6486 -4.9172 -1.8948 19 14 2.2409 -7.2847 -0.5815 20 1 1.2675 -7.8582 0.3823 21 1 2.0567 -7.9218 -1.9102 22 1 3.6225 -7.5371 -0.0992 23 6 1.9105 -2.1505 1.2283 24 1 -0.3634 -0.0115 -1.0276 25 1 -0.3633 -0.8842 0.5237 26 1 -0.3633 0.8956 0.5039 27 1 5.1377 0.3135 -1.4019 28 1 3.5398 -0.4630 -1.5114 29 1 3.8077 1.1309 -2.2569 30 1 3.6867 3.1723 -0.9080 31 1 5.2360 2.6173 -0.2279 32 1 4.2069 4.2698 1.2819 33 1 2.7130 3.3026 1.3513 34 1 5.4781 2.4160 2.2953 35 1 4.1046 2.8564 3.3385 36 1 5.3255 0.3799 0.9783 37 1 3.8456 -0.6015 1.1024 38 1 3.2592 -1.1463 -0.2146 39 1 0.4464 -2.2334 -0.9565 40 1 2.0340 -2.6037 -1.7617 41 1 1.5664 -5.4848 -2.6771 42 1 2.7373 -2.1992 1.9369 43 1 0.9532 -1.9411 1.7055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044101591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:36 Heat of formation + Delta-G solvation = -5.389494 kcal Electronic energy + Delta-G solvation = -24312.845619 eV Core-core repulsion = 20974.944704 eV Total energy + Delta-G solvation = -3337.900916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01433 -38.55849 -37.60057 -34.50049 -34.24125 -32.10828 -31.88880 -27.75966 -27.04289 -26.89501 -25.18679 -24.76129 -23.74973 -22.34163 -21.23489 -19.60625 -18.51532 -17.02910 -16.68712 -16.11031 -15.69532 -15.36865 -15.27227 -14.75272 -14.49992 -14.34889 -13.98395 -13.70543 -13.13833 -12.67746 -12.59061 -12.52144 -12.25063 -12.11842 -12.01842 -11.73329 -11.58191 -11.39558 -11.23033 -10.95467 -10.91829 -10.82746 -10.44367 -10.37073 -10.23395 -10.11169 -9.62619 -9.51578 -9.10740 -8.85060 -8.10433 -6.98330 -5.84949 -3.18197 2.90494 3.32213 3.36629 3.41240 3.42268 3.93253 4.38051 4.50946 4.63286 4.79791 4.94149 5.05154 5.13240 5.21581 5.28988 5.36697 5.43397 5.46243 5.57358 5.59287 5.65939 5.72869 5.75550 5.85608 5.90804 5.92159 5.95918 6.03704 6.14041 6.18017 6.26545 6.42642 6.44868 6.49577 6.86041 7.09237 7.14115 7.21536 7.43046 7.82472 7.88781 8.50784 8.96383 9.62400 10.48411 11.32082 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027646 B = 0.004865 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.564208 B = 5754.451760 C = 6000.397421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.594 5.594 3 C 0.535 3.465 4 O -0.551 6.551 5 C -0.115 4.115 6 C -0.158 4.158 7 C -0.093 4.093 8 C -0.166 4.166 9 C 0.058 3.942 10 O -0.373 6.373 11 C 0.055 3.945 12 C 0.060 3.940 13 C 0.157 3.843 14 N -0.605 5.605 15 C -0.225 4.225 16 H 0.082 0.918 17 C -0.005 4.005 18 N -0.921 5.921 19 Si 0.914 3.086 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.107 3.893 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.255 0.745 42 H 0.049 0.951 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 13.535 3.212 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.325 5.325 3 C 0.323 3.677 4 O -0.429 6.429 5 C -0.119 4.119 6 C -0.215 4.215 7 C -0.130 4.130 8 C -0.203 4.203 9 C -0.019 4.019 10 O -0.292 6.292 11 C -0.022 4.022 12 C -0.043 4.043 13 C 0.031 3.969 14 N -0.332 5.332 15 C -0.352 4.352 16 H 0.099 0.901 17 C -0.201 4.201 18 N -0.568 5.568 19 Si 0.743 3.257 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.210 1.210 23 C -0.020 4.020 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.133 13.642 3.275 14.939 hybrid contribution 0.147 -0.995 -0.223 1.030 sum 5.280 12.647 3.052 14.040 Atomic orbital electron populations 1.21574 0.79591 1.02763 1.01613 1.47878 1.06847 1.06035 1.71778 1.20154 0.89026 0.83305 0.75240 1.90560 1.70206 1.31367 1.50802 1.21436 0.93465 0.98681 0.98313 1.22169 1.02487 1.02007 0.94854 1.21402 0.99962 0.93087 0.98598 1.22378 1.04590 0.98683 0.94648 1.22612 0.97097 0.83039 0.99141 1.88006 1.77395 1.26220 1.37537 1.23231 0.99119 0.97083 0.82790 1.24645 0.97971 0.81269 1.00447 1.22626 0.96849 0.83467 0.93985 1.45711 1.80810 1.02095 1.04610 1.18951 1.40924 0.80235 0.95096 0.90051 1.24785 1.01677 0.98204 0.95481 1.69792 1.53635 1.34346 0.98991 0.86183 0.78101 0.84637 0.76731 1.21127 1.21523 1.20976 1.23030 0.98686 0.87016 0.93282 0.92881 0.90878 0.91100 0.91270 0.89677 0.91624 0.90898 0.91605 0.91425 0.88532 0.93608 0.89221 0.92302 0.86465 0.85563 0.94792 0.90394 0.93456 0.93252 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 9.07 59.85 0.54 1.93 16 2 N -0.59 -9.99 3.09 -175.74 -0.54 -10.53 16 3 C 0.53 8.89 5.91 -10.99 -0.06 8.83 16 4 O -0.55 -10.26 13.37 5.55 0.07 -10.19 16 5 C -0.12 -1.58 0.51 -155.52 -0.08 -1.66 16 6 C -0.16 -1.97 8.09 37.16 0.30 -1.67 16 7 C -0.09 -1.13 4.43 -26.54 -0.12 -1.24 16 8 C -0.17 -2.02 5.82 -26.59 -0.15 -2.17 16 9 C 0.06 0.68 6.84 37.20 0.25 0.94 16 10 O -0.37 -5.55 10.46 -35.23 -0.37 -5.92 16 11 C 0.05 0.75 5.16 37.21 0.19 0.94 16 12 C 0.06 1.08 1.92 -70.14 -0.13 0.94 16 13 C 0.16 3.46 6.93 -2.98 -0.02 3.44 16 14 N -0.61 -14.72 3.70 -178.07 -0.66 -15.38 16 15 C -0.22 -6.04 10.70 -15.06 -0.16 -6.20 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 18 N -0.92 -26.18 11.38 55.49 0.63 -25.55 16 19 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.11 2.12 8.07 -2.97 -0.02 2.10 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.17 6.39 -51.93 -0.33 0.83 16 26 H 0.07 1.10 7.34 -51.93 -0.38 0.72 16 27 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.08 1.21 4.90 -51.93 -0.25 0.96 16 29 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.07 0.92 8.03 -51.93 -0.42 0.51 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.47 5.81 -51.93 -0.30 1.16 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.12 1.76 3.74 -51.93 -0.19 1.56 16 38 H 0.13 2.11 3.04 -51.93 -0.16 1.95 16 39 H 0.03 0.77 6.69 -51.93 -0.35 0.42 16 40 H 0.08 1.89 7.15 -51.93 -0.37 1.52 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.05 0.94 7.60 -51.93 -0.39 0.54 16 43 H 0.04 0.77 7.02 -51.93 -0.36 0.40 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -30.74 320.72 -7.06 -37.80 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.44 Total: 2.60 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 0.44 Total: 5.94 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.57 Total: -51.46 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.29 Total: -16.11 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.74 -7.06 -37.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044101591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.408 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds