Wall clock time and date at job start Tue Mar 31 2020 01:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.45686 * 2 1 4 4 C 1.34775 * 119.99715 * 300.00111 * 3 2 1 5 5 O 1.21275 * 120.00111 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99809 * 180.02562 * 4 3 2 7 7 H 1.09006 * 110.33028 * 55.70108 * 6 4 3 8 8 C 1.54472 * 110.37165 * 293.45334 * 6 4 3 9 9 C 1.54510 * 104.06282 * 217.19013 * 8 6 4 10 10 C 1.54480 * 104.06242 * 359.97438 * 9 8 6 11 11 O 1.44421 * 110.37294 * 177.94853 * 6 4 3 12 12 C 1.53043 * 109.46072 * 240.02782 * 2 1 3 13 13 C 1.53194 * 109.31006 * 178.59862 * 12 2 1 14 14 N 1.46920 * 108.76787 * 54.65697 * 13 12 2 15 15 C 1.36936 * 120.63184 * 126.35501 * 14 13 12 16 16 H 1.07998 * 120.00043 * 207.69187 * 15 14 13 17 17 C 1.38812 * 119.99619 * 27.69958 * 15 14 13 18 18 N 1.31614 * 120.00126 * 17.36091 * 17 15 14 19 19 Si 1.86803 * 119.99606 * 197.35409 * 17 15 14 20 20 H 1.48496 * 109.47378 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46747 * 120.00209 * 19 17 15 22 22 H 1.48493 * 109.47340 * 239.99924 * 19 17 15 23 23 C 1.46932 * 118.73642 * 306.38275 * 14 13 12 24 24 C 1.53039 * 109.46240 * 119.97015 * 2 1 3 25 25 H 1.08994 * 109.47182 * 60.00523 * 1 2 3 26 26 H 1.08999 * 109.46888 * 299.99653 * 1 2 3 27 27 H 1.09005 * 109.46681 * 179.97438 * 1 2 3 28 28 H 0.96995 * 119.99552 * 120.00150 * 3 2 1 29 29 H 1.09002 * 110.51503 * 335.83083 * 8 6 4 30 30 H 1.09006 * 110.51881 * 98.40623 * 8 6 4 31 31 H 1.09001 * 110.51585 * 118.64289 * 9 8 6 32 32 H 1.09000 * 110.50920 * 241.35663 * 9 8 6 33 33 H 1.09002 * 110.37418 * 142.81366 * 10 9 8 34 34 H 1.08998 * 110.37795 * 265.04017 * 10 9 8 35 35 H 1.08994 * 109.49593 * 298.56594 * 12 2 1 36 36 H 1.09000 * 109.49415 * 58.66157 * 12 2 1 37 37 H 1.09000 * 109.59949 * 294.86254 * 13 12 2 38 38 H 1.09002 * 109.58309 * 174.43879 * 13 12 2 39 39 H 0.97007 * 119.99617 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.58540 * 293.81973 * 23 14 13 41 41 H 1.09007 * 109.70070 * 173.46534 * 23 14 13 42 42 H 1.08995 * 109.50117 * 301.34071 * 24 2 1 43 43 H 1.09005 * 109.49603 * 61.40603 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6922 2.2112 -1.0108 5 8 0.9954 1.8142 -1.9206 6 6 2.1946 3.6319 -1.0111 7 1 3.2819 3.6492 -0.9349 8 6 1.5613 4.4265 0.1523 9 6 1.3274 5.8350 -0.4384 10 6 1.8478 5.7248 -1.8888 11 8 1.7637 4.3174 -2.2071 12 6 2.0399 -0.7209 -1.2500 13 6 3.5714 -0.6883 -1.2643 14 7 4.0680 -1.2487 -0.0002 15 6 4.9758 -2.2739 -0.0003 16 1 5.0086 -2.9662 0.8278 17 6 5.8541 -2.4230 -1.0649 18 7 6.0604 -1.4211 -1.8931 19 14 6.7431 -4.0456 -1.3219 20 1 6.3401 -5.0042 -0.2618 21 1 6.3858 -4.6005 -2.6523 22 1 8.2097 -3.8223 -1.2565 23 6 3.5714 -0.6886 1.2642 24 6 2.0399 -0.7208 1.2500 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.5756 1.6987 0.7275 29 1 0.6149 3.9762 0.4519 30 1 2.2455 4.4742 0.9995 31 1 0.2656 6.0809 -0.4309 32 1 1.8971 6.5809 0.1157 33 1 1.2177 6.3048 -2.5631 34 1 2.8811 6.0666 -1.9482 35 1 1.6979 -1.7557 -1.2381 36 1 1.6572 -0.2209 -2.1398 37 1 3.9143 0.3412 -1.3674 38 1 3.9418 -1.2841 -2.0986 39 1 6.6739 -1.5255 -2.6373 40 1 3.9143 0.3409 1.3674 41 1 3.9417 -1.2826 2.0998 42 1 1.6573 -0.2210 2.1398 43 1 1.6975 -1.7556 1.2384 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045354240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:42 Heat of formation + Delta-G solvation = -60.203679 kcal Electronic energy + Delta-G solvation = -23883.315662 eV Core-core repulsion = 20543.037825 eV Total energy + Delta-G solvation = -3340.277837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38695 -38.96791 -36.99580 -34.36871 -32.54601 -31.78507 -30.99591 -29.87345 -29.13429 -27.41320 -24.21290 -23.84552 -22.25442 -21.66677 -21.15237 -20.22883 -18.60376 -17.53963 -16.81829 -16.45062 -15.58211 -15.06889 -14.83364 -14.49570 -14.39483 -13.87933 -13.75804 -13.42171 -13.24493 -13.23543 -12.96953 -12.38448 -11.96230 -11.88194 -11.74428 -11.57910 -11.47741 -11.36488 -11.10564 -10.93491 -10.89498 -10.71434 -10.33500 -10.21883 -10.00021 -9.91920 -9.63646 -9.52587 -8.95815 -8.55007 -8.43864 -6.64946 -5.76367 -3.19118 2.92077 3.21545 3.38533 3.46549 3.48339 4.06290 4.39344 4.51118 4.61350 4.76022 4.93866 5.06375 5.19611 5.34961 5.37353 5.44912 5.45818 5.50409 5.55212 5.60714 5.62687 5.74839 5.83019 5.96818 6.03760 6.13844 6.21342 6.39704 6.47648 6.54742 6.63170 6.67408 6.75982 6.86480 6.95031 7.13030 7.44754 7.73711 7.82195 7.93036 8.47064 8.61990 9.23443 9.87120 10.43491 11.31539 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.004856 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.644165 B = 5764.853491 C = 6290.100208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.186 3.814 3 N -0.708 5.708 4 C 0.522 3.478 5 O -0.520 6.520 6 C 0.055 3.945 7 H 0.094 0.906 8 C -0.144 4.144 9 C -0.153 4.153 10 C 0.040 3.960 11 O -0.343 6.343 12 C -0.152 4.152 13 C 0.178 3.822 14 N -0.591 5.591 15 C -0.254 4.254 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.146 3.854 24 C -0.137 4.137 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.396 0.604 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.016 0.984 38 H 0.084 0.916 39 H 0.253 0.747 40 H 0.013 0.987 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.375 12.535 6.426 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.101 3.899 3 N -0.360 5.360 4 C 0.307 3.693 5 O -0.395 6.395 6 C -0.006 4.006 7 H 0.112 0.888 8 C -0.182 4.182 9 C -0.190 4.190 10 C -0.037 4.037 11 O -0.261 6.261 12 C -0.192 4.192 13 C 0.052 3.948 14 N -0.314 5.314 15 C -0.384 4.384 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.019 3.981 24 C -0.176 4.176 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.231 0.769 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.034 0.966 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.031 0.969 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.830 12.130 5.414 16.525 hybrid contribution 0.947 -0.487 0.367 1.126 sum -8.884 11.643 5.781 15.745 Atomic orbital electron populations 1.22230 0.95472 1.01890 1.02264 1.20274 0.92530 0.79914 0.97219 1.45986 1.53317 1.12055 1.24687 1.19944 0.80766 0.86245 0.82359 1.90642 1.37249 1.76455 1.35155 1.22917 0.99721 0.91738 0.86243 0.88796 1.22902 1.02266 0.95189 0.97820 1.22930 1.02544 0.97070 0.96491 1.23493 1.00873 0.83620 0.95700 1.89319 1.87715 1.16575 1.32477 1.22591 1.00816 0.99111 0.96688 1.20689 0.87250 0.96915 0.89932 1.44076 1.48281 1.39607 0.99404 1.19213 1.09897 1.02995 1.06253 0.91699 1.25029 0.97266 0.97378 0.99893 1.70052 1.37592 1.28992 1.17834 0.86260 0.79102 0.83794 0.77816 1.20274 1.21567 1.21785 1.20855 0.90460 0.96162 0.90624 1.22333 0.99670 1.00531 0.95102 0.90818 0.93536 0.92228 0.76926 0.90228 0.89619 0.90511 0.90259 0.88858 0.91996 0.92196 0.91023 0.96605 0.89753 0.93705 0.96920 0.92646 0.92653 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 8.40 37.16 0.31 -2.16 16 2 C 0.19 3.17 0.66 -131.77 -0.09 3.08 16 3 N -0.71 -11.10 4.09 -47.56 -0.19 -11.30 16 4 C 0.52 8.89 6.49 -10.99 -0.07 8.82 16 5 O -0.52 -10.79 12.77 -13.65 -0.17 -10.97 16 6 C 0.06 0.76 3.70 -27.11 -0.10 0.66 16 7 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 8 C -0.14 -1.42 6.62 -25.17 -0.17 -1.59 16 9 C -0.15 -1.28 7.09 -25.16 -0.18 -1.46 16 10 C 0.04 0.41 7.63 37.93 0.29 0.70 16 11 O -0.34 -5.33 10.92 -54.44 -0.59 -5.92 16 12 C -0.15 -3.17 4.67 -26.61 -0.12 -3.30 16 13 C 0.18 4.37 5.05 -3.71 -0.02 4.35 16 14 N -0.59 -14.55 2.99 -172.32 -0.52 -15.06 16 15 C -0.25 -6.93 9.59 -15.06 -0.14 -7.07 16 16 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 17 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 18 N -0.90 -26.48 11.19 55.49 0.62 -25.86 16 19 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.15 2.86 6.24 -3.71 -0.02 2.84 16 24 C -0.14 -2.22 4.96 -26.61 -0.13 -2.36 16 25 H 0.07 1.28 6.17 -51.93 -0.32 0.96 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.40 5.39 7.27 -40.82 -0.30 5.09 16 29 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.58 6.20 -51.93 -0.32 1.26 16 37 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 38 H 0.08 2.38 6.04 -51.93 -0.31 2.07 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.01 0.24 6.94 -51.93 -0.36 -0.12 16 41 H 0.06 1.07 7.94 -51.93 -0.41 0.66 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -32.84 330.80 -8.47 -41.31 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.03 Total: 3.50 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.53 Total: 2.52 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.09 Total: -52.22 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.77 Total: -16.89 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.84 -8.47 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045354240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.898 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds