Wall clock time and date at job start Tue Mar 31 2020 02:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46912 * 2 1 4 4 C 1.52999 * 109.46964 * 240.00100 * 2 1 3 5 5 H 1.09000 * 109.47321 * 63.38276 * 4 2 1 6 6 O 1.42897 * 109.46937 * 183.38189 * 4 2 1 7 7 C 1.50704 * 109.47168 * 303.37831 * 4 2 1 8 8 O 1.21280 * 120.00096 * 270.96313 * 7 4 2 9 9 N 1.34782 * 119.99761 * 90.96319 * 7 4 2 10 10 C 1.46659 * 125.33730 * 175.72367 * 9 7 4 11 11 C 1.53724 * 107.94514 * 180.54596 * 10 9 7 12 12 H 1.08995 * 112.56426 * 139.71723 * 11 10 9 13 13 C 1.53695 * 109.33882 * 266.24910 * 11 10 9 14 14 N 1.46645 * 108.00836 * 127.55602 * 13 11 10 15 15 C 1.36929 * 125.32834 * 180.81621 * 14 13 11 16 16 H 1.08001 * 120.00043 * 180.02562 * 15 14 13 17 17 C 1.38808 * 120.00287 * 0.02562 * 15 14 13 18 18 N 1.31617 * 119.99841 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46675 * 59.99873 * 19 17 15 21 21 H 1.48498 * 109.47143 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47280 * 300.00046 * 19 17 15 23 23 C 1.46746 * 109.34082 * 0.83639 * 14 13 11 24 24 C 1.53933 * 106.72224 * 341.65750 * 23 14 13 25 25 H 1.08999 * 113.01143 * 150.82792 * 24 23 14 26 26 C 1.46780 * 125.33688 * 355.41656 * 9 7 4 27 27 H 1.08999 * 109.47425 * 295.38878 * 1 2 3 28 28 H 1.08998 * 109.47009 * 175.39011 * 1 2 3 29 29 H 1.08993 * 109.47358 * 55.39160 * 1 2 3 30 30 H 1.08995 * 109.46933 * 119.99654 * 2 1 3 31 31 H 1.08999 * 109.47614 * 59.99801 * 3 2 1 32 32 H 1.08993 * 109.47254 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47066 * 300.00221 * 3 2 1 34 34 H 0.96698 * 114.00010 * 59.99942 * 6 4 2 35 35 H 1.09001 * 109.77167 * 300.16528 * 10 9 7 36 36 H 1.09006 * 109.77697 * 60.92120 * 10 9 7 37 37 H 1.08996 * 109.76128 * 247.19498 * 13 11 10 38 38 H 1.08999 * 109.76258 * 7.91553 * 13 11 10 39 39 H 0.97000 * 120.00157 * 179.97438 * 18 17 15 40 40 H 1.08996 * 110.00959 * 222.35081 * 23 14 13 41 41 H 1.09000 * 110.01085 * 100.97535 * 23 14 13 42 42 H 1.09003 * 110.02668 * 280.77259 * 26 9 7 43 43 H 1.08991 * 110.02673 * 42.19022 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.7271 -0.1736 -2.1382 6 8 3.4668 -0.7904 -1.2102 7 6 1.4705 -2.1159 -1.2919 8 8 2.0595 -3.0282 -0.7519 9 7 0.3065 -2.3492 -1.9301 10 6 -0.3073 -3.6675 -2.1201 11 6 -1.6128 -3.4730 -2.9080 12 1 -1.7682 -4.2485 -3.6580 13 6 -2.7865 -3.3433 -1.9242 14 7 -3.5244 -2.1207 -2.2575 15 6 -4.6278 -1.6558 -1.5931 16 1 -5.1059 -0.7419 -1.9136 17 6 -5.1320 -2.3591 -0.5078 18 7 -4.5497 -3.4731 -0.1175 19 14 -6.6369 -1.7246 0.3990 20 1 -7.7838 -1.6447 -0.5409 21 1 -6.9719 -2.6505 1.5106 22 1 -6.3515 -0.3745 0.9477 23 6 -2.8955 -1.4736 -3.4147 24 6 -1.4749 -2.0552 -3.5295 25 1 -1.1015 -2.0688 -4.5535 26 6 -0.5487 -1.3230 -2.5383 27 1 -0.3634 0.4406 0.9284 28 1 -0.3633 -1.0243 -0.0826 29 1 -0.3634 0.5836 -0.8458 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 3.8167 -1.2651 -0.4438 35 1 0.3695 -4.3119 -2.6813 36 1 -0.5249 -4.1162 -1.1508 37 1 -3.4437 -4.2077 -2.0186 38 1 -2.4071 -3.2784 -0.9044 39 1 -4.9017 -3.9644 0.6411 40 1 -2.8457 -0.3961 -3.2581 41 1 -3.4628 -1.6937 -4.3191 42 1 -1.1394 -0.8254 -1.7691 43 1 0.0631 -0.5940 -3.0695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048800047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:12 Heat of formation + Delta-G solvation = -59.360226 kcal Electronic energy + Delta-G solvation = -24089.784469 eV Core-core repulsion = 20749.543207 eV Total energy + Delta-G solvation = -3340.241262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59726 -38.75908 -36.80261 -35.14770 -34.19409 -32.29108 -30.54253 -29.48485 -27.53638 -26.96181 -25.49021 -25.21886 -22.89643 -21.04560 -20.15560 -19.41732 -19.34387 -17.55002 -16.78817 -16.72503 -16.21720 -15.24999 -15.03068 -14.63021 -14.28291 -13.75524 -13.54948 -13.28433 -13.17351 -13.05610 -12.65798 -12.42813 -12.19116 -12.05900 -12.00644 -11.77817 -11.50050 -11.40751 -11.03290 -10.93657 -10.89810 -10.80836 -10.48773 -10.40404 -10.14939 -10.10139 -9.88410 -9.67325 -9.35961 -8.64489 -8.34840 -6.88650 -5.76761 -3.10871 2.67928 3.15207 3.36654 3.41423 3.42889 4.24908 4.44711 4.47941 4.65523 4.77108 4.79752 5.00308 5.19667 5.22362 5.32487 5.46087 5.48931 5.54941 5.61310 5.65221 5.66401 5.82508 5.83518 5.90893 5.95352 6.04107 6.13584 6.19277 6.25256 6.32055 6.42087 6.49284 6.53451 6.58542 6.77156 7.41157 7.51345 7.52956 7.72163 7.76985 8.21525 8.25660 9.17080 9.77691 10.41117 11.34465 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.005566 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.506717 B = 5029.769113 C = 5610.657939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.118 4.118 3 C -0.140 4.140 4 C 0.100 3.900 5 H 0.117 0.883 6 O -0.543 6.543 7 C 0.502 3.498 8 O -0.549 6.549 9 N -0.600 5.600 10 C 0.118 3.882 11 C -0.123 4.123 12 H 0.090 0.910 13 C 0.185 3.815 14 N -0.601 5.601 15 C -0.231 4.231 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.920 5.920 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.145 3.855 24 C -0.113 4.113 25 H 0.090 0.910 26 C 0.098 3.902 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.383 0.617 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.253 0.747 40 H 0.038 0.962 41 H 0.020 0.980 42 H 0.094 0.906 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.061 6.453 -3.888 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.138 4.138 3 C -0.197 4.197 4 C 0.038 3.962 5 H 0.135 0.865 6 O -0.348 6.348 7 C 0.290 3.710 8 O -0.427 6.427 9 N -0.334 5.334 10 C -0.004 4.004 11 C -0.143 4.143 12 H 0.109 0.891 13 C 0.060 3.940 14 N -0.328 5.328 15 C -0.359 4.359 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.019 3.981 24 C -0.132 4.132 25 H 0.108 0.892 26 C -0.024 4.024 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.232 0.768 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.112 0.888 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.265 6.248 -3.913 13.463 hybrid contribution -0.924 -0.127 0.968 1.344 sum 10.341 6.121 -2.945 12.373 Atomic orbital electron populations 1.22173 0.93270 1.03510 1.02789 1.21731 0.97478 0.97337 0.97222 1.21755 1.01401 0.94535 1.02029 1.21972 0.81910 0.91860 1.00469 0.86526 1.86544 1.17865 1.78912 1.51484 1.21131 0.79974 0.91861 0.78018 1.90675 1.60067 1.46276 1.45704 1.48329 1.20843 1.09356 1.54855 1.21846 0.93582 0.84300 1.00672 1.23156 0.96006 0.96543 0.98561 0.89127 1.21116 0.88765 0.89858 0.94272 1.44190 1.31645 1.24582 1.32363 1.18966 1.02488 1.05997 1.08498 0.90438 1.24790 0.99377 0.97282 0.98720 1.69941 1.41490 1.16762 1.28570 0.86219 0.82587 0.77770 0.79285 1.21145 1.21612 1.21177 1.21164 0.89580 0.95896 0.91502 1.22963 0.96699 0.95838 0.97746 0.89216 1.22549 0.92355 0.90862 0.96633 0.91870 0.91101 0.91729 0.90379 0.92321 0.92047 0.92433 0.76781 0.92354 0.90833 0.93755 0.93051 0.93625 0.94415 0.96212 0.88787 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 7.30 37.16 0.27 -1.88 16 2 C -0.12 -1.40 2.70 -90.62 -0.24 -1.65 16 3 C -0.14 -1.37 9.08 37.15 0.34 -1.03 16 4 C 0.10 1.30 2.65 -27.88 -0.07 1.23 16 5 H 0.12 1.38 6.58 -51.93 -0.34 1.03 16 6 O -0.54 -6.97 12.68 -52.91 -0.67 -7.65 16 7 C 0.50 8.21 6.06 -10.98 -0.07 8.15 16 8 O -0.55 -10.66 16.76 -12.12 -0.20 -10.87 16 9 N -0.60 -9.70 2.74 -172.17 -0.47 -10.17 16 10 C 0.12 2.02 6.24 -3.58 -0.02 2.00 16 11 C -0.12 -2.14 4.02 -88.60 -0.36 -2.49 16 12 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 13 C 0.18 4.21 4.75 -3.60 -0.02 4.19 16 14 N -0.60 -14.23 3.37 -171.93 -0.58 -14.81 16 15 C -0.23 -6.11 10.25 -15.06 -0.15 -6.26 16 16 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 18 N -0.92 -26.21 10.25 55.49 0.57 -25.64 16 19 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.15 2.70 6.37 -3.42 -0.02 2.68 16 24 C -0.11 -1.75 4.19 -88.24 -0.37 -2.12 16 25 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 26 C 0.10 1.45 4.50 -3.28 -0.01 1.44 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.17 5.42 -51.93 -0.28 0.89 16 29 H 0.06 0.80 6.87 -51.93 -0.36 0.44 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.58 7.78 -51.93 -0.40 0.18 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.38 4.20 8.63 45.56 0.39 4.59 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.40 7.44 -51.93 -0.39 1.02 16 37 H 0.04 1.14 7.45 -51.93 -0.39 0.76 16 38 H 0.05 1.33 6.51 -51.93 -0.34 0.99 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 40 H 0.04 0.67 7.94 -51.93 -0.41 0.26 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 1.56 4.74 -51.93 -0.25 1.31 16 43 H 0.06 0.77 6.82 -51.93 -0.35 0.42 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -30.85 327.70 -8.31 -39.16 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.04 Total: 4.54 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -0.83 Total: 4.02 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.48 Total: -50.62 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.87 Total: -18.51 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.85 -8.31 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048800047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.201 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds