Wall clock time and date at job start Tue Mar 31 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46912 * 2 1 4 4 C 1.52999 * 109.46964 * 240.00100 * 2 1 3 5 5 H 1.09000 * 109.47321 * 63.38276 * 4 2 1 6 6 O 1.42897 * 109.46937 * 183.38189 * 4 2 1 7 7 C 1.50704 * 109.47168 * 303.37831 * 4 2 1 8 8 O 1.21280 * 120.00096 * 270.96313 * 7 4 2 9 9 N 1.34782 * 119.99761 * 90.96319 * 7 4 2 10 10 C 1.46659 * 125.33730 * 175.72367 * 9 7 4 11 11 C 1.53724 * 107.94514 * 180.54596 * 10 9 7 12 12 H 1.08995 * 112.56426 * 139.71723 * 11 10 9 13 13 C 1.53695 * 109.33882 * 266.24910 * 11 10 9 14 14 N 1.46645 * 108.00836 * 127.55602 * 13 11 10 15 15 C 1.36929 * 125.32834 * 180.81621 * 14 13 11 16 16 H 1.08001 * 120.00043 * 180.02562 * 15 14 13 17 17 C 1.38808 * 120.00287 * 0.02562 * 15 14 13 18 18 N 1.31617 * 119.99841 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46675 * 59.99873 * 19 17 15 21 21 H 1.48498 * 109.47143 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47280 * 300.00046 * 19 17 15 23 23 C 1.46746 * 109.34082 * 0.83639 * 14 13 11 24 24 C 1.53933 * 106.72224 * 341.65750 * 23 14 13 25 25 H 1.08999 * 113.01143 * 150.82792 * 24 23 14 26 26 C 1.46780 * 125.33688 * 355.41656 * 9 7 4 27 27 H 1.08999 * 109.47425 * 295.38878 * 1 2 3 28 28 H 1.08998 * 109.47009 * 175.39011 * 1 2 3 29 29 H 1.08993 * 109.47358 * 55.39160 * 1 2 3 30 30 H 1.08995 * 109.46933 * 119.99654 * 2 1 3 31 31 H 1.08999 * 109.47614 * 59.99801 * 3 2 1 32 32 H 1.08993 * 109.47254 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47066 * 300.00221 * 3 2 1 34 34 H 0.96698 * 114.00010 * 59.99942 * 6 4 2 35 35 H 1.09001 * 109.77167 * 300.16528 * 10 9 7 36 36 H 1.09006 * 109.77697 * 60.92120 * 10 9 7 37 37 H 1.08996 * 109.76128 * 247.19498 * 13 11 10 38 38 H 1.08999 * 109.76258 * 7.91553 * 13 11 10 39 39 H 0.97000 * 120.00157 * 179.97438 * 18 17 15 40 40 H 1.08996 * 110.00959 * 222.35081 * 23 14 13 41 41 H 1.09000 * 110.01085 * 100.97535 * 23 14 13 42 42 H 1.09003 * 110.02668 * 280.77259 * 26 9 7 43 43 H 1.08991 * 110.02673 * 42.19022 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.7271 -0.1736 -2.1382 6 8 3.4668 -0.7904 -1.2102 7 6 1.4705 -2.1159 -1.2919 8 8 2.0595 -3.0282 -0.7519 9 7 0.3065 -2.3492 -1.9301 10 6 -0.3073 -3.6675 -2.1201 11 6 -1.6128 -3.4730 -2.9080 12 1 -1.7682 -4.2485 -3.6580 13 6 -2.7865 -3.3433 -1.9242 14 7 -3.5244 -2.1207 -2.2575 15 6 -4.6278 -1.6558 -1.5931 16 1 -5.1059 -0.7419 -1.9136 17 6 -5.1320 -2.3591 -0.5078 18 7 -4.5497 -3.4731 -0.1175 19 14 -6.6369 -1.7246 0.3990 20 1 -7.7838 -1.6447 -0.5409 21 1 -6.9719 -2.6505 1.5106 22 1 -6.3515 -0.3745 0.9477 23 6 -2.8955 -1.4736 -3.4147 24 6 -1.4749 -2.0552 -3.5295 25 1 -1.1015 -2.0688 -4.5535 26 6 -0.5487 -1.3230 -2.5383 27 1 -0.3634 0.4406 0.9284 28 1 -0.3633 -1.0243 -0.0826 29 1 -0.3634 0.5836 -0.8458 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 3.8167 -1.2651 -0.4438 35 1 0.3695 -4.3119 -2.6813 36 1 -0.5249 -4.1162 -1.1508 37 1 -3.4437 -4.2077 -2.0186 38 1 -2.4071 -3.2784 -0.9044 39 1 -4.9017 -3.9644 0.6411 40 1 -2.8457 -0.3961 -3.2581 41 1 -3.4628 -1.6937 -4.3191 42 1 -1.1394 -0.8254 -1.7691 43 1 0.0631 -0.5940 -3.0695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048800047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:11 Heat of formation + Delta-G solvation = -80.187362 kcal Electronic energy + Delta-G solvation = -24090.687602 eV Core-core repulsion = 20749.543207 eV Total energy + Delta-G solvation = -3341.144395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.88306 -40.11206 -37.97507 -36.68949 -35.27801 -34.05935 -32.02702 -31.10878 -28.70364 -28.04245 -26.95271 -26.88835 -24.39592 -22.08266 -21.83813 -20.77264 -20.58829 -19.00267 -18.46680 -17.87794 -17.48883 -16.70151 -16.33875 -16.17459 -15.66659 -15.44218 -14.70221 -14.60171 -14.53184 -14.33041 -13.90265 -13.65334 -13.61424 -13.36296 -13.25597 -13.18769 -12.86185 -12.77967 -12.65272 -12.58880 -12.10830 -12.02341 -11.91270 -11.84299 -11.81612 -11.59426 -11.36394 -11.30385 -10.70644 -10.54991 -9.67212 -8.84546 -7.82892 -5.17280 1.42082 1.46441 1.48582 1.54832 1.91930 2.50931 3.20137 3.30946 3.36007 3.51847 3.64451 3.67756 3.80194 3.87558 3.97042 4.21005 4.27606 4.32078 4.36851 4.52388 4.55280 4.58302 4.74379 4.74990 4.84500 4.88260 4.93782 5.01923 5.07568 5.11186 5.14347 5.21909 5.31199 5.39472 5.42583 5.51291 5.64725 5.79550 6.23312 6.40373 6.53612 6.98107 7.13445 7.83441 8.44589 9.26917 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.005566 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.506717 B = 5029.769113 C = 5610.657939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.134 4.134 4 C 0.111 3.889 5 H 0.139 0.861 6 O -0.545 6.545 7 C 0.495 3.505 8 O -0.588 6.588 9 N -0.600 5.600 10 C 0.122 3.878 11 C -0.113 4.113 12 H 0.112 0.888 13 C 0.199 3.801 14 N -0.620 5.620 15 C -0.234 4.234 16 H 0.087 0.913 17 C -0.066 4.066 18 N -0.953 5.953 19 Si 0.972 3.028 20 H -0.276 1.276 21 H -0.301 1.301 22 H -0.276 1.276 23 C 0.139 3.861 24 C -0.095 4.095 25 H 0.134 0.866 26 C 0.098 3.902 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.390 0.610 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.001 0.999 38 H 0.009 0.991 39 H 0.243 0.757 40 H 0.053 0.947 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.118 8.931 -5.933 16.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.131 4.131 3 C -0.191 4.191 4 C 0.049 3.951 5 H 0.156 0.844 6 O -0.351 6.351 7 C 0.285 3.715 8 O -0.469 6.469 9 N -0.333 5.333 10 C -0.001 4.001 11 C -0.132 4.132 12 H 0.130 0.870 13 C 0.074 3.926 14 N -0.347 5.347 15 C -0.363 4.363 16 H 0.105 0.895 17 C -0.259 4.259 18 N -0.602 5.602 19 Si 0.801 3.199 20 H -0.202 1.202 21 H -0.228 1.228 22 H -0.202 1.202 23 C 0.014 3.986 24 C -0.115 4.115 25 H 0.152 0.848 26 C -0.024 4.024 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.240 0.760 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.027 0.973 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.325 8.773 -5.999 16.274 hybrid contribution -1.271 -0.902 1.603 2.236 sum 11.054 7.871 -4.396 14.264 Atomic orbital electron populations 1.22109 0.94485 1.01287 1.03372 1.21678 0.96180 0.98782 0.96432 1.21719 1.01727 0.92647 1.02994 1.22014 0.81841 0.89525 1.01714 0.84351 1.86528 1.17602 1.78883 1.52094 1.21920 0.79601 0.93015 0.76959 1.90651 1.61227 1.47857 1.47192 1.48405 1.20887 1.09179 1.54811 1.21691 0.93922 0.85397 0.99094 1.22989 0.93435 0.99070 0.97744 0.86981 1.20737 0.89688 0.88321 0.93897 1.44462 1.31388 1.25162 1.33639 1.19395 1.02941 1.05815 1.08135 0.89515 1.25584 1.02330 0.97832 1.00165 1.70193 1.42948 1.18191 1.28863 0.85243 0.79707 0.77148 0.77817 1.20241 1.22780 1.20208 1.21401 0.91085 0.96523 0.89634 1.23030 0.95062 0.93364 1.00001 0.84794 1.22619 0.92564 0.91023 0.96167 0.92011 0.94795 0.90299 0.91365 0.91667 0.91442 0.91213 0.75957 0.90663 0.94306 0.98044 0.97325 0.94779 0.92930 0.95287 0.90833 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 7.30 71.98 0.53 -3.50 16 2 C -0.11 -2.44 2.70 -10.79 -0.03 -2.47 16 3 C -0.13 -2.20 9.08 71.98 0.65 -1.55 16 4 C 0.11 2.61 2.65 29.85 0.08 2.69 16 5 H 0.14 2.65 6.58 -2.39 -0.02 2.63 16 6 O -0.54 -12.67 12.68 -132.07 -1.68 -14.35 16 7 C 0.50 15.74 6.06 87.66 0.53 16.27 16 8 O -0.59 -23.02 16.76 13.88 0.23 -22.79 16 9 N -0.60 -18.70 2.74 -817.01 -2.24 -20.94 16 10 C 0.12 4.18 6.24 86.59 0.54 4.72 16 11 C -0.11 -3.82 4.02 -9.48 -0.04 -3.86 16 12 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 13 C 0.20 9.43 4.75 86.59 0.41 9.84 16 14 N -0.62 -29.46 3.37 -697.86 -2.35 -31.81 16 15 C -0.23 -12.42 10.25 84.03 0.86 -11.56 16 16 H 0.09 4.34 7.83 -2.91 -0.02 4.31 16 17 C -0.07 -3.69 5.48 84.86 0.47 -3.23 16 18 N -0.95 -57.09 10.25 21.65 0.22 -56.87 16 19 Si 0.97 45.05 29.55 68.60 2.03 47.07 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 C 0.14 4.81 6.37 86.65 0.55 5.36 16 24 C -0.10 -2.63 4.19 -9.25 -0.04 -2.67 16 25 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 26 C 0.10 2.61 4.50 86.72 0.39 3.00 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.03 1.13 5.42 -2.39 -0.01 1.12 16 29 H 0.08 1.78 6.87 -2.39 -0.02 1.76 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.06 7.78 -2.39 -0.02 1.04 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.39 7.97 8.63 -74.06 -0.64 7.33 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.04 1.58 7.44 -2.38 -0.02 1.57 16 37 H 0.00 0.07 7.45 -2.39 -0.02 0.06 16 38 H 0.01 0.48 6.51 -2.39 -0.02 0.46 16 39 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.05 1.69 7.94 -2.39 -0.02 1.67 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 2.32 4.74 -2.39 -0.01 2.31 16 43 H 0.11 1.99 6.82 -2.39 -0.02 1.97 16 Total: -1.00 -70.64 327.70 1.49 -69.15 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.37 Total: 17.50 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 4.90 Total: 13.04 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -4.37 Total: -109.63 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.44 Total: -37.14 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.64 1.49 -69.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048800047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.040 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds