Wall clock time and date at job start Tue Mar 31 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47041 * 2 1 4 4 C 1.50700 * 109.47058 * 120.00179 * 2 1 3 5 5 O 1.21279 * 119.99849 * 345.60660 * 4 2 1 6 6 N 1.34775 * 120.00095 * 165.60426 * 4 2 1 7 7 C 1.45325 * 119.60607 * 187.06127 * 6 4 2 8 8 C 1.53155 * 108.72251 * 125.31665 * 7 6 4 9 9 C 1.52515 * 109.79542 * 53.83946 * 8 7 6 10 10 H 1.09003 * 108.39664 * 180.66705 * 9 8 7 11 11 O 1.42691 * 110.61836 * 61.29701 * 9 8 7 12 12 C 1.43078 * 113.86590 * 174.63862 * 11 9 8 13 13 C 1.53229 * 109.44273 * 61.65444 * 12 11 9 14 14 N 1.49266 * 109.26671 * 308.34046 * 13 12 11 15 15 C 1.36937 * 122.54292 * 231.32561 * 14 13 12 16 16 H 1.08002 * 120.00421 * 153.79151 * 15 14 13 17 17 C 1.38809 * 119.99657 * 333.78658 * 15 14 13 18 18 N 1.31624 * 120.00459 * 344.79695 * 17 15 14 19 19 Si 1.86803 * 120.00022 * 164.79750 * 17 15 14 20 20 H 1.48504 * 109.47189 * 89.99938 * 19 17 15 21 21 H 1.48498 * 109.47069 * 209.99902 * 19 17 15 22 22 H 1.48500 * 109.46958 * 330.00284 * 19 17 15 23 23 C 1.47593 * 116.22961 * 50.31765 * 14 13 12 24 24 H 1.09001 * 110.31732 * 187.65200 * 23 14 13 25 25 C 1.46800 * 120.72162 * 5.65684 * 6 4 2 26 26 H 1.08993 * 109.47265 * 299.99411 * 1 2 3 27 27 H 1.08997 * 109.47006 * 60.00085 * 1 2 3 28 28 H 1.09002 * 109.46788 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46920 * 240.00364 * 2 1 3 30 30 H 1.08993 * 109.47234 * 185.23734 * 3 2 1 31 31 H 1.08993 * 109.47155 * 305.24319 * 3 2 1 32 32 H 1.09005 * 109.46637 * 65.24251 * 3 2 1 33 33 H 1.08997 * 110.06893 * 5.20558 * 7 6 4 34 34 H 1.09001 * 109.10513 * 244.85831 * 7 6 4 35 35 H 1.09000 * 109.42004 * 293.74721 * 8 7 6 36 36 H 1.08995 * 109.36196 * 173.90502 * 8 7 6 37 37 H 1.09001 * 109.47415 * 181.63842 * 12 11 9 38 38 H 1.08996 * 109.48391 * 301.65642 * 12 11 9 39 39 H 1.09000 * 109.60183 * 68.17802 * 13 12 11 40 40 H 1.09004 * 109.59639 * 188.49394 * 13 12 11 41 41 H 0.96995 * 120.00693 * 180.02562 * 18 17 15 42 42 H 1.08995 * 109.52310 * 114.39153 * 25 6 4 43 43 H 1.09000 * 109.52222 * 354.26894 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.2753 -0.9398 2.1498 6 7 3.3229 -1.0910 1.3092 7 6 3.7633 -1.9086 2.4270 8 6 4.4405 -3.1680 1.8782 9 6 5.5451 -2.7767 0.9021 10 1 6.0027 -3.6881 0.5172 11 8 6.5444 -1.9989 1.5596 12 6 7.6757 -1.6956 0.7378 13 6 7.2223 -0.8660 -0.4681 14 7 6.0835 -1.5573 -1.1413 15 6 6.0688 -1.8138 -2.4864 16 1 5.4907 -2.6404 -2.8722 17 6 6.7968 -1.0112 -3.3539 18 7 7.2522 0.1546 -2.9464 19 14 7.1302 -1.5855 -5.0999 20 1 6.0342 -1.1255 -5.9901 21 1 8.4201 -1.0190 -5.5695 22 1 7.2013 -3.0685 -5.1281 23 6 4.9684 -1.9770 -0.2703 24 1 4.2588 -2.5857 -0.8307 25 6 4.2810 -0.7144 0.2628 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1259 1.4440 -0.0938 31 1 1.6021 1.9827 -0.8392 32 1 1.7553 1.9284 0.9333 33 1 2.9097 -2.1907 3.0433 34 1 4.4756 -1.3408 3.0255 35 1 3.7016 -3.7812 1.3623 36 1 4.8704 -3.7358 2.7032 37 1 8.4036 -1.1272 1.3168 38 1 8.1317 -2.6227 0.3904 39 1 6.9000 0.1199 -0.1333 40 1 8.0486 -0.7613 -1.1713 41 1 7.7606 0.7156 -3.5526 42 1 5.0295 -0.0406 0.6796 43 1 3.7545 -0.2153 -0.5507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074174733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:06 Heat of formation + Delta-G solvation = -57.685160 kcal Electronic energy + Delta-G solvation = -24357.887711 eV Core-core repulsion = 21017.719085 eV Total energy + Delta-G solvation = -3340.168626 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.31037 -38.67827 -35.68886 -34.73502 -34.28418 -31.71740 -31.53198 -29.50108 -27.46854 -27.00563 -25.26476 -23.96160 -22.87683 -22.61424 -20.93637 -19.19035 -18.16928 -17.16024 -16.90872 -15.62242 -15.50571 -15.31669 -15.07005 -14.54509 -14.49000 -13.95581 -13.77939 -13.54690 -13.12462 -12.84778 -12.66738 -12.36586 -12.15151 -12.05184 -11.93044 -11.75377 -11.29039 -11.18654 -11.05740 -10.95668 -10.84136 -10.79044 -10.59674 -10.34217 -10.23240 -9.98745 -9.68655 -9.33016 -9.08276 -8.67851 -8.21811 -6.84705 -5.94505 -3.37746 2.92258 3.27618 3.34878 3.36090 3.41001 4.29760 4.33641 4.70760 5.02089 5.11839 5.16519 5.19096 5.24967 5.33176 5.51755 5.56727 5.61683 5.72024 5.75520 5.85689 5.90972 5.92870 5.94106 6.05080 6.06029 6.10942 6.18685 6.24153 6.28421 6.31517 6.34389 6.39621 6.55804 6.67190 6.94677 7.00298 7.38676 7.60545 7.77308 7.85025 8.18387 8.49845 8.96771 9.60531 10.20601 11.14015 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.006674 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.382373 B = 4194.114094 C = 5280.528177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.117 4.117 3 C -0.145 4.145 4 C 0.518 3.482 5 O -0.558 6.558 6 N -0.602 5.602 7 C 0.115 3.885 8 C -0.123 4.123 9 C 0.081 3.919 10 H 0.051 0.949 11 O -0.386 6.386 12 C 0.040 3.960 13 C 0.133 3.867 14 N -0.586 5.586 15 C -0.253 4.253 16 H 0.069 0.931 17 C 0.007 3.993 18 N -0.901 5.901 19 Si 0.904 3.096 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.131 3.869 24 H 0.073 0.927 25 C 0.098 3.902 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.032 0.968 40 H 0.096 0.904 41 H 0.256 0.744 42 H 0.072 0.928 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 -1.591 6.243 8.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.138 4.138 3 C -0.203 4.203 4 C 0.306 3.694 5 O -0.437 6.437 6 N -0.334 5.334 7 C -0.008 4.008 8 C -0.161 4.161 9 C 0.021 3.979 10 H 0.069 0.931 11 O -0.305 6.305 12 C -0.038 4.038 13 C 0.008 3.992 14 N -0.309 5.309 15 C -0.382 4.382 16 H 0.087 0.913 17 C -0.192 4.192 18 N -0.545 5.545 19 Si 0.734 3.266 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.022 3.978 24 H 0.092 0.908 25 C -0.026 4.026 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.571 -1.507 6.761 8.889 hybrid contribution 0.512 -0.290 -1.362 1.483 sum -5.059 -1.797 5.399 7.614 Atomic orbital electron populations 1.21594 0.92935 1.02260 1.01884 1.21292 0.97722 0.97724 0.97109 1.21848 1.02289 0.93847 1.02316 1.20701 0.81485 0.78619 0.88565 1.90615 1.55900 1.57213 1.39985 1.47888 1.09035 1.51796 1.24720 1.21164 0.99263 0.91418 0.88927 1.21821 0.97033 0.97733 0.99545 1.22219 0.89122 0.93698 0.92850 0.93132 1.87747 1.30368 1.73245 1.39174 1.23287 0.87509 0.99180 0.93815 1.21838 0.92639 0.92674 0.92042 1.44686 1.14113 1.68608 1.03487 1.19122 1.28960 1.08817 0.81292 0.91333 1.25021 1.01493 0.94845 0.97883 1.69977 1.39728 1.09114 1.35646 0.86274 0.77625 0.78314 0.84406 1.21266 1.21463 1.20467 1.21582 0.90962 0.93881 0.91334 0.90845 1.22583 0.91262 0.99602 0.89193 0.91965 0.92243 0.92526 0.88511 0.91242 0.91522 0.92474 0.89525 0.91347 0.90627 0.90561 0.89994 0.94095 0.95021 0.88573 0.93419 0.90977 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.59 37.16 0.32 -1.33 16 2 C -0.12 -1.68 2.40 -91.77 -0.22 -1.90 16 3 C -0.15 -1.95 8.85 37.16 0.33 -1.62 16 4 C 0.52 8.71 6.90 -10.99 -0.08 8.63 16 5 O -0.56 -10.65 15.33 5.56 0.09 -10.57 16 6 N -0.60 -10.02 2.94 -174.09 -0.51 -10.53 16 7 C 0.12 1.79 6.16 -4.59 -0.03 1.76 16 8 C -0.12 -1.79 5.83 -26.90 -0.16 -1.95 16 9 C 0.08 1.41 2.73 -26.88 -0.07 1.34 16 10 H 0.05 0.92 8.13 -51.93 -0.42 0.49 16 11 O -0.39 -7.10 9.61 -35.23 -0.34 -7.44 16 12 C 0.04 0.74 6.99 37.28 0.26 1.00 16 13 C 0.13 2.92 5.06 -2.39 -0.01 2.91 16 14 N -0.59 -13.41 2.79 -162.15 -0.45 -13.86 16 15 C -0.25 -6.41 9.73 -15.06 -0.15 -6.55 16 16 H 0.07 1.72 7.87 -52.49 -0.41 1.30 16 17 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 18 N -0.90 -24.20 11.11 55.49 0.62 -23.58 16 19 Si 0.90 20.49 29.58 -169.99 -5.03 15.46 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.13 2.54 2.96 -67.07 -0.20 2.35 16 24 H 0.07 1.44 7.99 -51.93 -0.42 1.02 16 25 C 0.10 1.76 4.68 -3.71 -0.02 1.74 16 26 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 1.39 7.19 -51.93 -0.37 1.02 16 30 H 0.07 1.02 6.06 -51.93 -0.31 0.70 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.34 6.95 -51.93 -0.36 0.98 16 34 H 0.07 1.08 7.95 -51.93 -0.41 0.67 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.73 7.15 -51.93 -0.37 0.36 16 40 H 0.10 2.35 6.20 -51.93 -0.32 2.03 16 41 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 42 H 0.07 1.42 6.55 -51.93 -0.34 1.08 16 43 H 0.09 1.60 4.57 -51.93 -0.24 1.37 16 LS Contribution 326.62 15.07 4.92 4.92 Total: -1.00 -28.15 326.62 -7.73 -35.88 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.91 Total: 3.26 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.11 Total: 6.46 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.35 Total: -47.98 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.25 Total: -18.01 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.15 -7.73 -35.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074174733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.806 kcal (2) G-P(sol) polarization free energy of solvation -28.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds