Wall clock time and date at job start Tue Mar 31 2020 02:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47041 * 2 1 4 4 C 1.50700 * 109.47058 * 120.00179 * 2 1 3 5 5 O 1.21279 * 119.99849 * 345.60660 * 4 2 1 6 6 N 1.34775 * 120.00095 * 165.60426 * 4 2 1 7 7 C 1.45325 * 119.60607 * 187.06127 * 6 4 2 8 8 C 1.53155 * 108.72251 * 125.31665 * 7 6 4 9 9 C 1.52515 * 109.79542 * 53.83946 * 8 7 6 10 10 H 1.09003 * 108.39664 * 180.66705 * 9 8 7 11 11 O 1.42691 * 110.61836 * 61.29701 * 9 8 7 12 12 C 1.43078 * 113.86590 * 174.63862 * 11 9 8 13 13 C 1.53229 * 109.44273 * 61.65444 * 12 11 9 14 14 N 1.49266 * 109.26671 * 308.34046 * 13 12 11 15 15 C 1.36937 * 122.54292 * 231.32561 * 14 13 12 16 16 H 1.08002 * 120.00421 * 153.79151 * 15 14 13 17 17 C 1.38809 * 119.99657 * 333.78658 * 15 14 13 18 18 N 1.31624 * 120.00459 * 344.79695 * 17 15 14 19 19 Si 1.86803 * 120.00022 * 164.79750 * 17 15 14 20 20 H 1.48504 * 109.47189 * 89.99938 * 19 17 15 21 21 H 1.48498 * 109.47069 * 209.99902 * 19 17 15 22 22 H 1.48500 * 109.46958 * 330.00284 * 19 17 15 23 23 C 1.47593 * 116.22961 * 50.31765 * 14 13 12 24 24 H 1.09001 * 110.31732 * 187.65200 * 23 14 13 25 25 C 1.46800 * 120.72162 * 5.65684 * 6 4 2 26 26 H 1.08993 * 109.47265 * 299.99411 * 1 2 3 27 27 H 1.08997 * 109.47006 * 60.00085 * 1 2 3 28 28 H 1.09002 * 109.46788 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46920 * 240.00364 * 2 1 3 30 30 H 1.08993 * 109.47234 * 185.23734 * 3 2 1 31 31 H 1.08993 * 109.47155 * 305.24319 * 3 2 1 32 32 H 1.09005 * 109.46637 * 65.24251 * 3 2 1 33 33 H 1.08997 * 110.06893 * 5.20558 * 7 6 4 34 34 H 1.09001 * 109.10513 * 244.85831 * 7 6 4 35 35 H 1.09000 * 109.42004 * 293.74721 * 8 7 6 36 36 H 1.08995 * 109.36196 * 173.90502 * 8 7 6 37 37 H 1.09001 * 109.47415 * 181.63842 * 12 11 9 38 38 H 1.08996 * 109.48391 * 301.65642 * 12 11 9 39 39 H 1.09000 * 109.60183 * 68.17802 * 13 12 11 40 40 H 1.09004 * 109.59639 * 188.49394 * 13 12 11 41 41 H 0.96995 * 120.00693 * 180.02562 * 18 17 15 42 42 H 1.08995 * 109.52310 * 114.39153 * 25 6 4 43 43 H 1.09000 * 109.52222 * 354.26894 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.2753 -0.9398 2.1498 6 7 3.3229 -1.0910 1.3092 7 6 3.7633 -1.9086 2.4270 8 6 4.4405 -3.1680 1.8782 9 6 5.5451 -2.7767 0.9021 10 1 6.0027 -3.6881 0.5172 11 8 6.5444 -1.9989 1.5596 12 6 7.6757 -1.6956 0.7378 13 6 7.2223 -0.8660 -0.4681 14 7 6.0835 -1.5573 -1.1413 15 6 6.0688 -1.8138 -2.4864 16 1 5.4907 -2.6404 -2.8722 17 6 6.7968 -1.0112 -3.3539 18 7 7.2522 0.1546 -2.9464 19 14 7.1302 -1.5855 -5.0999 20 1 6.0342 -1.1255 -5.9901 21 1 8.4201 -1.0190 -5.5695 22 1 7.2013 -3.0685 -5.1281 23 6 4.9684 -1.9770 -0.2703 24 1 4.2588 -2.5857 -0.8307 25 6 4.2810 -0.7144 0.2628 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1259 1.4440 -0.0938 31 1 1.6021 1.9827 -0.8392 32 1 1.7553 1.9284 0.9333 33 1 2.9097 -2.1907 3.0433 34 1 4.4756 -1.3408 3.0255 35 1 3.7016 -3.7812 1.3623 36 1 4.8704 -3.7358 2.7032 37 1 8.4036 -1.1272 1.3168 38 1 8.1317 -2.6227 0.3904 39 1 6.9000 0.1199 -0.1333 40 1 8.0486 -0.7613 -1.1713 41 1 7.7606 0.7156 -3.5526 42 1 5.0295 -0.0406 0.6796 43 1 3.7545 -0.2153 -0.5507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074174733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:05 Heat of formation + Delta-G solvation = -74.153261 kcal Electronic energy + Delta-G solvation = -24358.601821 eV Core-core repulsion = 21017.719085 eV Total energy + Delta-G solvation = -3340.882736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70561 -40.14320 -37.11070 -36.38767 -35.56988 -33.34852 -33.07682 -31.02324 -29.20728 -28.07333 -26.62337 -25.67881 -24.38996 -24.00448 -22.36063 -20.65605 -19.56372 -18.81872 -18.39452 -17.08391 -17.00037 -16.88712 -16.56601 -16.16681 -15.82396 -15.51295 -15.14646 -14.85558 -14.78399 -14.27616 -14.10964 -13.78804 -13.49318 -13.29855 -13.16239 -13.01128 -12.87435 -12.81028 -12.58248 -12.46434 -12.21868 -12.16362 -12.05664 -11.97307 -11.82875 -11.57254 -11.23128 -10.77357 -10.69003 -10.48432 -9.66768 -8.67757 -7.88889 -5.34043 1.47337 1.50423 1.57451 1.58478 2.04413 2.48947 2.88532 3.26883 3.32110 3.62172 3.78703 3.93999 4.00677 4.06516 4.12668 4.19920 4.27063 4.36197 4.46554 4.50581 4.58521 4.62546 4.72706 4.78134 4.83928 4.87611 4.90131 4.91937 4.95323 5.01901 5.05794 5.19684 5.26208 5.29528 5.30581 5.55684 5.61243 5.63437 6.26289 6.35194 6.41845 7.04732 7.14760 7.72189 8.31186 9.17346 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.006674 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.382373 B = 4194.114094 C = 5280.528177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.117 4.117 3 C -0.140 4.140 4 C 0.515 3.485 5 O -0.580 6.580 6 N -0.602 5.602 7 C 0.114 3.886 8 C -0.112 4.112 9 C 0.083 3.917 10 H 0.048 0.952 11 O -0.386 6.386 12 C 0.050 3.950 13 C 0.140 3.860 14 N -0.601 5.601 15 C -0.259 4.259 16 H 0.069 0.931 17 C -0.040 4.040 18 N -0.928 5.928 19 Si 0.963 3.037 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.274 1.274 23 C 0.128 3.872 24 H 0.071 0.929 25 C 0.116 3.884 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.013 0.987 40 H 0.068 0.932 41 H 0.251 0.749 42 H 0.054 0.946 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -2.442 6.594 9.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.138 4.138 3 C -0.198 4.198 4 C 0.305 3.695 5 O -0.461 6.461 6 N -0.333 5.333 7 C -0.009 4.009 8 C -0.151 4.151 9 C 0.023 3.977 10 H 0.066 0.934 11 O -0.305 6.305 12 C -0.027 4.027 13 C 0.015 3.985 14 N -0.325 5.325 15 C -0.389 4.389 16 H 0.087 0.913 17 C -0.236 4.236 18 N -0.573 5.573 19 Si 0.791 3.209 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.199 1.199 23 C 0.020 3.980 24 H 0.089 0.911 25 C -0.008 4.008 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.061 0.939 39 H 0.031 0.969 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.295 -2.379 7.134 9.807 hybrid contribution 0.697 -0.030 -1.433 1.593 sum -5.598 -2.408 5.702 8.346 Atomic orbital electron populations 1.21575 0.91473 1.02345 1.02762 1.21355 0.98921 0.97839 0.95709 1.21810 1.01180 0.93513 1.03292 1.21135 0.81155 0.78210 0.89006 1.90603 1.56301 1.58146 1.41007 1.47882 1.08908 1.51933 1.24594 1.21247 0.99413 0.91616 0.88594 1.21795 0.96113 0.97507 0.99650 1.22256 0.89637 0.92906 0.92880 0.93370 1.87762 1.30431 1.73334 1.38967 1.23170 0.87907 0.98909 0.92746 1.21671 0.91520 0.92643 0.92627 1.44836 1.15607 1.68672 1.03335 1.19384 1.28376 1.08490 0.82602 0.91332 1.25651 1.01913 0.95030 1.00997 1.70114 1.40665 1.10046 1.36488 0.85360 0.76918 0.77967 0.80656 1.21218 1.22027 1.19860 1.21717 0.90235 0.94444 0.91618 0.91109 1.22195 0.90914 0.98433 0.89260 0.92530 0.89893 0.92858 0.88619 0.92980 0.89551 0.92286 0.89092 0.91642 0.89523 0.88099 0.87427 0.93860 0.96884 0.91369 0.93973 0.92788 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.59 71.98 0.62 -2.32 16 2 C -0.12 -3.21 2.40 -11.54 -0.03 -3.24 16 3 C -0.14 -3.61 8.85 71.98 0.64 -2.97 16 4 C 0.52 16.79 6.90 87.66 0.60 17.40 16 5 O -0.58 -21.47 15.33 -3.03 -0.05 -21.52 16 6 N -0.60 -19.42 2.94 -823.08 -2.42 -21.83 16 7 C 0.11 3.33 6.16 86.65 0.53 3.86 16 8 C -0.11 -2.99 5.83 30.49 0.18 -2.81 16 9 C 0.08 2.75 2.73 30.50 0.08 2.83 16 10 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 11 O -0.39 -13.54 9.61 -148.98 -1.43 -14.97 16 12 C 0.05 1.81 6.99 72.06 0.50 2.31 16 13 C 0.14 6.23 5.06 85.92 0.43 6.66 16 14 N -0.60 -27.61 2.79 -666.91 -1.86 -29.47 16 15 C -0.26 -13.15 9.73 84.03 0.82 -12.33 16 16 H 0.07 3.41 7.87 -2.91 -0.02 3.39 16 17 C -0.04 -2.06 5.06 84.86 0.43 -1.63 16 18 N -0.93 -50.79 11.11 21.65 0.24 -50.55 16 19 Si 0.96 42.27 29.58 68.60 2.03 44.30 16 20 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 C 0.13 4.88 2.96 44.95 0.13 5.01 16 24 H 0.07 2.72 7.99 -2.39 -0.02 2.70 16 25 C 0.12 4.18 4.68 86.43 0.40 4.58 16 26 H 0.06 1.40 7.94 -2.39 -0.02 1.38 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 2.66 7.19 -2.39 -0.02 2.64 16 30 H 0.05 1.51 6.06 -2.39 -0.01 1.50 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.09 2.63 6.95 -2.39 -0.02 2.61 16 34 H 0.07 1.97 7.95 -2.39 -0.02 1.95 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.01 0.62 7.15 -2.39 -0.02 0.60 16 40 H 0.07 3.42 6.20 -2.39 -0.01 3.40 16 41 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 42 H 0.05 2.15 6.55 -2.39 -0.02 2.14 16 43 H 0.08 3.06 4.57 -2.39 -0.01 3.05 16 Total: -1.00 -59.55 326.62 2.85 -56.71 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.99 Total: 19.97 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 5.35 Total: 17.37 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -4.04 Total: -101.86 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -1.48 Total: -36.49 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -59.55 2.85 -56.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074174733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.448 kcal (2) G-P(sol) polarization free energy of solvation -59.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds