Wall clock time and date at job start Tue Mar 31 2020 02:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47356 * 2 1 4 4 C 1.50705 * 109.46854 * 120.00101 * 2 1 3 5 5 O 1.21281 * 120.00084 * 263.85917 * 4 2 1 6 6 N 1.34774 * 119.99797 * 83.85880 * 4 2 1 7 7 C 1.46986 * 120.72205 * 4.91880 * 6 4 2 8 8 C 1.53162 * 108.44029 * 234.56518 * 7 6 4 9 9 C 1.52506 * 109.79411 * 305.46908 * 8 7 6 10 10 H 1.09001 * 108.93604 * 179.67169 * 9 8 7 11 11 O 1.42692 * 110.62180 * 298.71164 * 9 8 7 12 12 C 1.43073 * 113.87391 * 185.35257 * 11 9 8 13 13 C 1.53228 * 109.44879 * 298.35606 * 12 11 9 14 14 N 1.47182 * 108.69986 * 51.57463 * 13 12 11 15 15 C 1.36933 * 121.22015 * 129.33459 * 14 13 12 16 16 H 1.07999 * 119.99970 * 205.33655 * 15 14 13 17 17 C 1.38813 * 120.00390 * 25.32834 * 15 14 13 18 18 N 1.31623 * 119.99669 * 16.41434 * 17 15 14 19 19 Si 1.86801 * 120.00193 * 196.40971 * 17 15 14 20 20 H 1.48497 * 109.46692 * 90.00464 * 19 17 15 21 21 H 1.48499 * 109.47065 * 210.00216 * 19 17 15 22 22 H 1.48501 * 109.46988 * 330.00400 * 19 17 15 23 23 C 1.47591 * 117.55374 * 309.06407 * 14 13 12 24 24 H 1.08992 * 110.31605 * 172.29416 * 23 14 13 25 25 C 1.47236 * 119.88241 * 185.56582 * 6 4 2 26 26 H 1.08998 * 109.46835 * 56.96593 * 1 2 3 27 27 H 1.08998 * 109.47251 * 176.96627 * 1 2 3 28 28 H 1.08999 * 109.46709 * 296.97203 * 1 2 3 29 29 H 1.08997 * 109.46688 * 239.99908 * 2 1 3 30 30 H 1.08999 * 109.47099 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47357 * 300.00001 * 3 2 1 32 32 H 1.09003 * 109.47015 * 59.99939 * 3 2 1 33 33 H 1.09004 * 109.64441 * 114.88313 * 7 6 4 34 34 H 1.09002 * 109.64542 * 354.25213 * 7 6 4 35 35 H 1.09005 * 109.41439 * 185.36959 * 8 7 6 36 36 H 1.08998 * 109.41606 * 65.56780 * 8 7 6 37 37 H 1.08999 * 109.47270 * 58.34379 * 12 11 9 38 38 H 1.08996 * 109.48257 * 178.35617 * 12 11 9 39 39 H 1.09005 * 109.59560 * 291.81703 * 13 12 11 40 40 H 1.09000 * 109.60226 * 171.34355 * 13 12 11 41 41 H 0.96992 * 119.99827 * 179.97438 * 18 17 15 42 42 H 1.09004 * 110.50415 * 6.35980 * 25 6 4 43 43 H 1.08998 * 108.75899 * 246.04396 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.3404 -0.0733 2.2154 6 7 2.1392 -2.0539 1.2365 7 6 1.8734 -2.8338 0.0192 8 6 0.8140 -3.8914 0.3430 9 6 1.2660 -4.7268 1.5361 10 1 0.5002 -5.4702 1.7579 11 8 2.4834 -5.4095 1.2392 12 6 2.9081 -6.3095 2.2671 13 6 3.1693 -5.5244 3.5568 14 7 1.9896 -4.6953 3.8517 15 6 1.4005 -4.7133 5.0877 16 1 0.3570 -4.4551 5.1924 17 6 2.1443 -5.0636 6.2062 18 7 3.4593 -5.0635 6.1484 19 14 1.2791 -5.5348 7.7932 20 1 1.0321 -6.9991 7.8063 21 1 2.1333 -5.1666 8.9508 22 1 -0.0157 -4.8135 7.8842 23 6 1.4686 -3.8393 2.7682 24 1 0.5239 -3.3846 3.0662 25 6 2.5121 -2.7547 2.4765 26 1 -0.3633 0.5602 -0.8615 27 1 -0.3633 -1.0262 -0.0544 28 1 -0.3633 0.4661 0.9159 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 2.7903 -3.3226 -0.3103 34 1 1.5042 -2.1736 -0.7656 35 1 0.6737 -4.5403 -0.5215 36 1 -0.1286 -3.3988 0.5819 37 1 2.1296 -7.0515 2.4448 38 1 3.8240 -6.8114 1.9553 39 1 4.0420 -4.8847 3.4249 40 1 3.3430 -6.2188 4.3788 41 1 3.9790 -5.3078 6.9300 42 1 2.5545 -2.0559 3.3120 43 1 3.4892 -3.2173 2.3375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074174734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:08 Heat of formation + Delta-G solvation = -55.879560 kcal Electronic energy + Delta-G solvation = -24190.932942 eV Core-core repulsion = 20850.842613 eV Total energy + Delta-G solvation = -3340.090329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20033 -38.68002 -35.70874 -34.72182 -34.33488 -31.65537 -31.48047 -29.49542 -27.50369 -27.16502 -25.21104 -23.97653 -23.02689 -22.19965 -21.36637 -18.98846 -18.09042 -17.28033 -16.87799 -15.57955 -15.49585 -15.28363 -15.03490 -14.64196 -14.37779 -14.04599 -13.77488 -13.44253 -13.15589 -12.88679 -12.68490 -12.37764 -12.28755 -12.27019 -11.96533 -11.84802 -11.31457 -11.22382 -11.09794 -11.06371 -10.86976 -10.71915 -10.56829 -10.23350 -10.18248 -9.98385 -9.63212 -9.29524 -8.99406 -8.59706 -8.19051 -6.77733 -5.86117 -3.29992 2.95117 3.31445 3.36016 3.41685 3.43023 4.31011 4.40946 4.61198 4.82703 4.94083 5.01087 5.15375 5.26398 5.29500 5.38932 5.46463 5.54917 5.63844 5.68068 5.76944 5.78981 5.80109 5.83925 6.02068 6.04714 6.08207 6.11833 6.19436 6.23605 6.31107 6.36549 6.44075 6.70675 6.77056 6.98228 7.09778 7.49432 7.69868 7.81712 7.88689 8.29600 8.54769 9.08419 9.69943 10.26916 11.21243 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020286 B = 0.005619 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.915399 B = 4981.767741 C = 5703.547339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.133 4.133 4 C 0.511 3.489 5 O -0.544 6.544 6 N -0.608 5.608 7 C 0.113 3.887 8 C -0.123 4.123 9 C 0.082 3.918 10 H 0.052 0.948 11 O -0.388 6.388 12 C 0.040 3.960 13 C 0.136 3.864 14 N -0.585 5.585 15 C -0.255 4.255 16 H 0.069 0.931 17 C 0.005 3.995 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.278 1.278 23 C 0.134 3.866 24 H 0.072 0.928 25 C 0.108 3.892 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.028 0.972 40 H 0.098 0.902 41 H 0.256 0.744 42 H 0.090 0.910 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 3.914 -15.366 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 C -0.191 4.191 4 C 0.299 3.701 5 O -0.421 6.421 6 N -0.341 5.341 7 C -0.010 4.010 8 C -0.162 4.162 9 C 0.023 3.977 10 H 0.070 0.930 11 O -0.308 6.308 12 C -0.038 4.038 13 C 0.011 3.989 14 N -0.307 5.307 15 C -0.384 4.384 16 H 0.087 0.913 17 C -0.194 4.194 18 N -0.545 5.545 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.204 1.204 23 C 0.025 3.975 24 H 0.090 0.910 25 C -0.016 4.016 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.127 4.211 -14.812 15.942 hybrid contribution -0.397 -0.459 1.146 1.296 sum -4.523 3.752 -13.666 14.876 Atomic orbital electron populations 1.21734 0.92820 1.02519 1.02720 1.21329 0.97726 0.97735 0.97062 1.21631 1.01285 0.94031 1.02150 1.20632 0.77791 0.82170 0.89548 1.90685 1.49828 1.65521 1.36116 1.48448 1.68062 1.05601 1.11990 1.21683 0.99346 0.93395 0.86621 1.21811 0.98539 0.97317 0.98507 1.22203 0.86994 0.94116 0.94401 0.93047 1.87710 1.41034 1.58707 1.43301 1.23329 0.98382 0.91869 0.90229 1.21502 0.88840 0.94311 0.94258 1.44333 1.33478 1.44229 1.08687 1.19199 0.92950 1.43101 0.83123 0.91278 1.25048 0.95261 1.01524 0.97601 1.70014 1.03912 1.50973 1.29617 0.86216 0.78812 0.78419 0.82891 1.21371 1.21640 1.20377 1.21590 0.96497 0.90258 0.89148 0.90979 1.22375 0.99353 0.94744 0.85105 0.91663 0.92057 0.91939 0.89235 0.92503 0.92300 0.91539 0.90704 0.90080 0.90455 0.90503 0.94132 0.90144 0.95386 0.88389 0.93425 0.89195 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.07 37.16 0.34 -1.06 16 2 C -0.12 -1.37 2.42 -91.77 -0.22 -1.60 16 3 C -0.13 -1.50 8.71 37.15 0.32 -1.17 16 4 C 0.51 8.58 6.80 -10.98 -0.07 8.51 16 5 O -0.54 -11.56 15.48 5.56 0.09 -11.47 16 6 N -0.61 -10.12 2.98 -172.41 -0.51 -10.63 16 7 C 0.11 1.45 6.04 -3.69 -0.02 1.42 16 8 C -0.12 -1.60 5.82 -26.90 -0.16 -1.76 16 9 C 0.08 1.44 2.73 -26.89 -0.07 1.37 16 10 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 11 O -0.39 -7.18 9.68 -35.23 -0.34 -7.52 16 12 C 0.04 0.76 6.97 37.28 0.26 1.02 16 13 C 0.14 3.19 4.96 -3.55 -0.02 3.17 16 14 N -0.58 -14.34 2.71 -163.87 -0.44 -14.78 16 15 C -0.25 -6.88 9.70 -15.06 -0.15 -7.03 16 16 H 0.07 1.85 7.88 -52.49 -0.41 1.43 16 17 C 0.00 0.13 4.98 -17.43 -0.09 0.04 16 18 N -0.90 -25.75 11.05 55.49 0.61 -25.14 16 19 Si 0.91 21.57 29.58 -169.99 -5.03 16.54 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.13 2.78 2.95 -67.07 -0.20 2.58 16 24 H 0.07 1.54 7.99 -51.93 -0.42 1.13 16 25 C 0.11 2.24 5.65 -3.48 -0.02 2.22 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.58 7.79 -51.93 -0.40 0.18 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.86 6.32 -51.93 -0.33 0.53 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.84 7.88 -51.93 -0.41 0.44 16 33 H 0.07 1.01 7.94 -51.93 -0.41 0.59 16 34 H 0.08 0.78 5.16 -51.93 -0.27 0.51 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.03 0.70 7.19 -51.93 -0.37 0.33 16 40 H 0.10 2.53 6.06 -51.93 -0.31 2.22 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 42 H 0.09 2.18 7.05 -51.93 -0.37 1.82 16 43 H 0.07 1.46 6.67 -51.93 -0.35 1.11 16 LS Contribution 329.10 15.07 4.96 4.96 Total: -1.00 -31.24 329.10 -7.75 -38.99 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.99 Total: 1.35 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -0.10 Total: 7.71 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.34 Total: -50.56 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.25 Total: -18.99 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.24 -7.75 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074174734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.890 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds