Wall clock time and date at job start Tue Mar 31 2020 02:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47356 * 2 1 4 4 C 1.50705 * 109.46854 * 120.00101 * 2 1 3 5 5 O 1.21281 * 120.00084 * 263.85917 * 4 2 1 6 6 N 1.34774 * 119.99797 * 83.85880 * 4 2 1 7 7 C 1.46986 * 120.72205 * 4.91880 * 6 4 2 8 8 C 1.53162 * 108.44029 * 234.56518 * 7 6 4 9 9 C 1.52506 * 109.79411 * 305.46908 * 8 7 6 10 10 H 1.09001 * 108.93604 * 179.67169 * 9 8 7 11 11 O 1.42692 * 110.62180 * 298.71164 * 9 8 7 12 12 C 1.43073 * 113.87391 * 185.35257 * 11 9 8 13 13 C 1.53228 * 109.44879 * 298.35606 * 12 11 9 14 14 N 1.47182 * 108.69986 * 51.57463 * 13 12 11 15 15 C 1.36933 * 121.22015 * 129.33459 * 14 13 12 16 16 H 1.07999 * 119.99970 * 205.33655 * 15 14 13 17 17 C 1.38813 * 120.00390 * 25.32834 * 15 14 13 18 18 N 1.31623 * 119.99669 * 16.41434 * 17 15 14 19 19 Si 1.86801 * 120.00193 * 196.40971 * 17 15 14 20 20 H 1.48497 * 109.46692 * 90.00464 * 19 17 15 21 21 H 1.48499 * 109.47065 * 210.00216 * 19 17 15 22 22 H 1.48501 * 109.46988 * 330.00400 * 19 17 15 23 23 C 1.47591 * 117.55374 * 309.06407 * 14 13 12 24 24 H 1.08992 * 110.31605 * 172.29416 * 23 14 13 25 25 C 1.47236 * 119.88241 * 185.56582 * 6 4 2 26 26 H 1.08998 * 109.46835 * 56.96593 * 1 2 3 27 27 H 1.08998 * 109.47251 * 176.96627 * 1 2 3 28 28 H 1.08999 * 109.46709 * 296.97203 * 1 2 3 29 29 H 1.08997 * 109.46688 * 239.99908 * 2 1 3 30 30 H 1.08999 * 109.47099 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47357 * 300.00001 * 3 2 1 32 32 H 1.09003 * 109.47015 * 59.99939 * 3 2 1 33 33 H 1.09004 * 109.64441 * 114.88313 * 7 6 4 34 34 H 1.09002 * 109.64542 * 354.25213 * 7 6 4 35 35 H 1.09005 * 109.41439 * 185.36959 * 8 7 6 36 36 H 1.08998 * 109.41606 * 65.56780 * 8 7 6 37 37 H 1.08999 * 109.47270 * 58.34379 * 12 11 9 38 38 H 1.08996 * 109.48257 * 178.35617 * 12 11 9 39 39 H 1.09005 * 109.59560 * 291.81703 * 13 12 11 40 40 H 1.09000 * 109.60226 * 171.34355 * 13 12 11 41 41 H 0.96992 * 119.99827 * 179.97438 * 18 17 15 42 42 H 1.09004 * 110.50415 * 6.35980 * 25 6 4 43 43 H 1.08998 * 108.75899 * 246.04396 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.3404 -0.0733 2.2154 6 7 2.1392 -2.0539 1.2365 7 6 1.8734 -2.8338 0.0192 8 6 0.8140 -3.8914 0.3430 9 6 1.2660 -4.7268 1.5361 10 1 0.5002 -5.4702 1.7579 11 8 2.4834 -5.4095 1.2392 12 6 2.9081 -6.3095 2.2671 13 6 3.1693 -5.5244 3.5568 14 7 1.9896 -4.6953 3.8517 15 6 1.4005 -4.7133 5.0877 16 1 0.3570 -4.4551 5.1924 17 6 2.1443 -5.0636 6.2062 18 7 3.4593 -5.0635 6.1484 19 14 1.2791 -5.5348 7.7932 20 1 1.0321 -6.9991 7.8063 21 1 2.1333 -5.1666 8.9508 22 1 -0.0157 -4.8135 7.8842 23 6 1.4686 -3.8393 2.7682 24 1 0.5239 -3.3846 3.0662 25 6 2.5121 -2.7547 2.4765 26 1 -0.3633 0.5602 -0.8615 27 1 -0.3633 -1.0262 -0.0544 28 1 -0.3633 0.4661 0.9159 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 2.7903 -3.3226 -0.3103 34 1 1.5042 -2.1736 -0.7656 35 1 0.6737 -4.5403 -0.5215 36 1 -0.1286 -3.3988 0.5819 37 1 2.1296 -7.0515 2.4448 38 1 3.8240 -6.8114 1.9553 39 1 4.0420 -4.8847 3.4249 40 1 3.3430 -6.2188 4.3788 41 1 3.9790 -5.3078 6.9300 42 1 2.5545 -2.0559 3.3120 43 1 3.4892 -3.2173 2.3375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074174734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:07 Heat of formation + Delta-G solvation = -76.931174 kcal Electronic energy + Delta-G solvation = -24191.845808 eV Core-core repulsion = 20850.842613 eV Total energy + Delta-G solvation = -3341.003196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.59874 -40.17006 -37.14281 -36.48437 -35.44631 -33.43117 -33.00140 -31.05566 -29.31394 -28.01383 -26.63786 -25.66061 -24.60404 -23.47654 -22.86550 -20.49648 -19.43724 -18.91471 -18.42352 -17.11050 -16.99648 -16.90606 -16.54482 -16.20079 -15.70992 -15.58124 -15.12689 -14.90486 -14.65662 -14.36587 -14.05681 -13.81687 -13.54114 -13.40916 -13.14064 -13.05815 -12.87460 -12.80557 -12.62920 -12.44068 -12.24556 -12.13735 -12.02508 -11.90320 -11.87404 -11.61818 -11.21660 -10.79045 -10.62961 -10.52107 -9.67972 -8.74628 -7.94610 -5.42085 1.42852 1.43373 1.52849 1.64610 2.01165 2.44724 2.88632 3.19707 3.43326 3.52391 3.85282 3.93991 4.02365 4.08385 4.15625 4.19574 4.26995 4.35318 4.47177 4.52986 4.62523 4.63765 4.79019 4.81189 4.86115 4.88880 4.91372 4.94721 4.99141 5.03002 5.10310 5.23058 5.26917 5.34095 5.39776 5.47992 5.56410 5.58478 6.23755 6.34651 6.52214 7.01770 7.22194 7.69048 8.22870 9.10142 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020286 B = 0.005619 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.915399 B = 4981.767741 C = 5703.547339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.133 4.133 4 C 0.501 3.499 5 O -0.602 6.602 6 N -0.607 5.607 7 C 0.108 3.892 8 C -0.116 4.116 9 C 0.086 3.914 10 H 0.051 0.949 11 O -0.383 6.383 12 C 0.053 3.947 13 C 0.143 3.857 14 N -0.603 5.603 15 C -0.266 4.266 16 H 0.068 0.932 17 C -0.047 4.047 18 N -0.933 5.933 19 Si 0.971 3.029 20 H -0.278 1.278 21 H -0.296 1.296 22 H -0.271 1.271 23 C 0.132 3.868 24 H 0.061 0.939 25 C 0.125 3.875 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.126 0.874 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.108 0.892 39 H -0.002 1.002 40 H 0.069 0.931 41 H 0.252 0.748 42 H 0.039 0.961 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 3.608 -18.950 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.291 3.709 5 O -0.483 6.483 6 N -0.339 5.339 7 C -0.013 4.013 8 C -0.154 4.154 9 C 0.026 3.974 10 H 0.069 0.931 11 O -0.302 6.302 12 C -0.025 4.025 13 C 0.018 3.982 14 N -0.326 5.326 15 C -0.396 4.396 16 H 0.085 0.915 17 C -0.243 4.243 18 N -0.579 5.579 19 Si 0.799 3.201 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.196 1.196 23 C 0.024 3.976 24 H 0.079 0.921 25 C 0.000 4.000 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.144 0.856 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.146 0.854 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.126 0.874 39 H 0.016 0.984 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.123 3.896 -18.465 19.840 hybrid contribution 0.231 -0.288 2.254 2.284 sum -5.892 3.608 -16.211 17.621 Atomic orbital electron populations 1.21778 0.90949 1.03659 1.03165 1.21434 0.98999 0.97348 0.94966 1.21663 1.00642 0.94011 1.02785 1.21789 0.76518 0.81905 0.90690 1.90661 1.52191 1.66683 1.38770 1.48524 1.67642 1.06044 1.11689 1.22047 0.99656 0.93935 0.85627 1.21875 0.98869 0.97134 0.97497 1.22283 0.86530 0.93798 0.94744 0.93111 1.87727 1.41604 1.58503 1.42391 1.23146 0.99936 0.91267 0.88129 1.21331 0.87695 0.93467 0.95735 1.44570 1.33582 1.45529 1.08933 1.19497 0.93099 1.42495 0.84524 0.91477 1.25807 0.95843 1.01990 1.00642 1.70178 1.05239 1.52326 1.30159 0.85210 0.77749 0.78321 0.78817 1.20481 1.22244 1.19606 1.21750 0.95399 0.90537 0.89912 0.92076 1.21752 0.98449 0.93763 0.86025 0.88169 0.90937 0.94240 0.85643 0.93641 0.88506 0.93982 0.90812 0.85409 0.86752 0.88794 0.93486 0.87431 0.98404 0.91241 0.93906 0.94190 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.07 71.98 0.65 -1.55 16 2 C -0.11 -2.16 2.42 -11.54 -0.03 -2.18 16 3 C -0.13 -2.71 8.71 71.98 0.63 -2.09 16 4 C 0.50 16.64 6.80 87.66 0.60 17.24 16 5 O -0.60 -26.90 15.48 -3.03 -0.05 -26.95 16 6 N -0.61 -19.77 2.98 -817.77 -2.44 -22.20 16 7 C 0.11 2.35 6.04 86.34 0.52 2.88 16 8 C -0.12 -2.49 5.82 30.48 0.18 -2.32 16 9 C 0.09 2.83 2.73 30.49 0.08 2.91 16 10 H 0.05 1.72 8.11 -2.39 -0.02 1.70 16 11 O -0.38 -13.43 9.68 -148.98 -1.44 -14.87 16 12 C 0.05 1.99 6.97 72.06 0.50 2.49 16 13 C 0.14 6.98 4.96 86.33 0.43 7.41 16 14 N -0.60 -30.75 2.71 -672.36 -1.82 -32.57 16 15 C -0.27 -14.94 9.70 84.03 0.82 -14.12 16 16 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 17 C -0.05 -2.67 4.98 84.86 0.42 -2.25 16 18 N -0.93 -55.98 11.05 21.65 0.24 -55.74 16 19 Si 0.97 45.58 29.58 68.60 2.03 47.61 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 C 0.13 5.60 2.95 44.95 0.13 5.73 16 24 H 0.06 2.69 7.99 -2.39 -0.02 2.67 16 25 C 0.13 5.48 5.65 86.34 0.49 5.97 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.01 7.79 -2.39 -0.02 0.99 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.13 1.68 6.32 -2.39 -0.02 1.66 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.05 7.88 -2.39 -0.02 1.03 16 33 H 0.07 1.69 7.94 -2.39 -0.02 1.67 16 34 H 0.13 1.65 5.16 -2.39 -0.01 1.63 16 35 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 38 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.00 -0.11 7.19 -2.38 -0.02 -0.13 16 40 H 0.07 3.77 6.06 -2.39 -0.01 3.75 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.04 2.11 7.05 -2.38 -0.02 2.09 16 43 H 0.04 2.02 6.67 -2.39 -0.02 2.00 16 Total: -1.00 -75.14 329.10 2.93 -72.21 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.99 Total: 12.41 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 5.42 Total: 20.11 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.02 Total: -110.52 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.49 Total: -41.82 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.14 2.93 -72.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074174734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.722 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds