Wall clock time and date at job start Tue Mar 31 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47156 * 2 1 4 4 C 1.50696 * 109.47105 * 240.00223 * 2 1 3 5 5 O 1.21279 * 120.00430 * 20.61201 * 4 2 1 6 6 N 1.34776 * 120.00023 * 200.61079 * 4 2 1 7 7 C 1.46841 * 120.41110 * 4.77696 * 6 4 2 8 8 C 1.52911 * 109.49684 * 232.19396 * 7 6 4 9 9 C 1.52794 * 108.89539 * 306.41151 * 8 7 6 10 10 H 1.08999 * 109.34112 * 302.70347 * 9 8 7 11 11 O 1.42602 * 111.11793 * 182.39354 * 9 8 7 12 12 C 1.43141 * 113.63736 * 176.38913 * 11 9 8 13 13 C 1.53198 * 109.74372 * 61.68132 * 12 11 9 14 14 N 1.47351 * 108.80090 * 308.79643 * 13 12 11 15 15 C 1.36932 * 121.30572 * 230.25766 * 14 13 12 16 16 H 1.08003 * 120.00517 * 150.97917 * 15 14 13 17 17 C 1.38814 * 120.00022 * 330.97915 * 15 14 13 18 18 N 1.31618 * 119.99689 * 348.45070 * 17 15 14 19 19 Si 1.86801 * 120.00231 * 168.44576 * 17 15 14 20 20 H 1.48500 * 109.46924 * 94.96102 * 19 17 15 21 21 H 1.48497 * 109.47483 * 214.96093 * 19 17 15 22 22 H 1.48504 * 109.47066 * 334.96445 * 19 17 15 23 23 C 1.46878 * 117.39176 * 50.23606 * 14 13 12 24 24 H 1.08996 * 110.20504 * 67.97285 * 23 14 13 25 25 C 1.47138 * 120.41326 * 185.05245 * 6 4 2 26 26 H 1.09009 * 109.47382 * 59.99971 * 1 2 3 27 27 H 1.09002 * 109.47462 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47279 * 300.00004 * 1 2 3 29 29 H 1.08995 * 109.47169 * 120.00069 * 2 1 3 30 30 H 1.09000 * 109.46954 * 55.73151 * 3 2 1 31 31 H 1.08996 * 109.47252 * 175.73126 * 3 2 1 32 32 H 1.09002 * 109.47402 * 295.73822 * 3 2 1 33 33 H 1.08997 * 109.50823 * 352.17521 * 7 6 4 34 34 H 1.08999 * 109.51264 * 112.32234 * 7 6 4 35 35 H 1.08996 * 109.65772 * 186.52349 * 8 7 6 36 36 H 1.09004 * 109.54110 * 66.23006 * 8 7 6 37 37 H 1.08997 * 109.42847 * 181.76887 * 12 11 9 38 38 H 1.09003 * 109.42449 * 301.66209 * 12 11 9 39 39 H 1.08996 * 109.58073 * 68.58694 * 13 12 11 40 40 H 1.08996 * 109.58227 * 188.99828 * 13 12 11 41 41 H 0.97007 * 119.99925 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.72136 * 246.43234 * 25 6 4 43 43 H 1.08996 * 109.72563 * 7.10345 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.3076 -0.8398 -2.1943 6 7 3.2869 -1.2018 -1.2599 7 6 4.1364 -1.1432 -0.0636 8 6 5.4765 -0.4989 -0.4202 9 6 6.0849 -1.2464 -1.6058 10 1 6.1931 -2.3006 -1.3509 11 8 7.3654 -0.7178 -1.9441 12 6 8.0212 -1.4320 -2.9970 13 6 7.1832 -1.3519 -4.2770 14 7 5.8004 -1.7542 -3.9652 15 6 5.1457 -2.6927 -4.7173 16 1 4.3837 -3.3108 -4.2660 17 6 5.4615 -2.8498 -6.0599 18 7 6.2161 -1.9586 -6.6670 19 14 4.8156 -4.3260 -7.0049 20 1 3.5615 -3.9538 -7.7077 21 1 5.8299 -4.7600 -7.9988 22 1 4.5417 -5.4379 -6.0593 23 6 5.1519 -1.1095 -2.8158 24 1 4.9761 -0.0545 -3.0258 25 6 3.8245 -1.7981 -2.4929 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.6155 1.9779 0.8493 31 1 3.1272 1.4434 0.0765 32 1 1.7403 1.9338 -0.9257 33 1 3.6419 -0.5495 0.7052 34 1 4.3093 -2.1525 0.3099 35 1 6.1508 -0.5585 0.4340 36 1 5.3187 0.5456 -0.6891 37 1 9.0019 -0.9919 -3.1776 38 1 8.1402 -2.4761 -2.7075 39 1 7.1898 -0.3294 -4.6545 40 1 7.5986 -2.0236 -5.0282 41 1 6.4371 -2.0685 -7.6052 42 1 3.9902 -2.8650 -2.3435 43 1 3.1220 -1.6454 -3.3121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074174735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:10 Heat of formation + Delta-G solvation = -56.919504 kcal Electronic energy + Delta-G solvation = -24097.064138 eV Core-core repulsion = 20756.928713 eV Total energy + Delta-G solvation = -3340.135425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28417 -38.66719 -36.08215 -34.82510 -34.36434 -31.66969 -31.38629 -29.85803 -27.33586 -27.05626 -25.45418 -23.92334 -23.10673 -21.85869 -20.98481 -19.68566 -18.43848 -17.36027 -16.81161 -15.74041 -15.39105 -15.28339 -15.02492 -14.85510 -14.21016 -13.97457 -13.75907 -13.50127 -13.06802 -12.98773 -12.82954 -12.65863 -12.36432 -12.27468 -11.96632 -11.84496 -11.31728 -11.23646 -11.10660 -10.95059 -10.94388 -10.79914 -10.57066 -10.25197 -10.21867 -10.01463 -9.61566 -9.40816 -8.97989 -8.55125 -8.32337 -6.70980 -5.83938 -3.32062 2.84391 3.19255 3.35668 3.42788 3.43880 4.24274 4.42622 4.52548 4.78801 4.85921 4.95765 5.14065 5.23368 5.32440 5.39822 5.40920 5.52137 5.55967 5.64228 5.71479 5.74720 5.75811 5.78864 5.93390 5.94342 6.07598 6.11726 6.16405 6.19314 6.26932 6.33631 6.47055 6.66363 6.73058 6.88799 7.13985 7.52070 7.65366 7.71710 7.89030 8.33489 8.43081 9.10486 9.72712 10.31071 11.23946 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017319 B = 0.006219 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.319396 B = 4501.045562 C = 5715.193282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.515 3.485 5 O -0.538 6.538 6 N -0.612 5.612 7 C 0.110 3.890 8 C -0.125 4.125 9 C 0.077 3.923 10 H 0.051 0.949 11 O -0.390 6.390 12 C 0.039 3.961 13 C 0.143 3.857 14 N -0.587 5.587 15 C -0.257 4.257 16 H 0.071 0.929 17 C 0.007 3.993 18 N -0.903 5.903 19 Si 0.905 3.095 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.138 3.862 24 H 0.036 0.964 25 C 0.123 3.877 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.027 0.973 40 H 0.097 0.903 41 H 0.255 0.745 42 H 0.070 0.930 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 3.413 16.043 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 C -0.200 4.200 4 C 0.303 3.697 5 O -0.414 6.414 6 N -0.345 5.345 7 C -0.014 4.014 8 C -0.163 4.163 9 C 0.017 3.983 10 H 0.069 0.931 11 O -0.309 6.309 12 C -0.039 4.039 13 C 0.017 3.983 14 N -0.312 5.312 15 C -0.387 4.387 16 H 0.089 0.911 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.734 3.266 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.203 1.203 23 C 0.030 3.970 24 H 0.053 0.947 25 C 0.002 3.998 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.395 3.472 15.403 16.151 hybrid contribution -0.149 -0.933 -0.782 1.226 sum -3.544 2.539 14.621 15.258 Atomic orbital electron populations 1.21632 0.92737 1.02491 1.02229 1.21320 0.98097 0.97508 0.96790 1.21768 1.01495 0.93885 1.02881 1.20634 0.81301 0.78329 0.89434 1.90698 1.55487 1.57907 1.37356 1.48298 1.13264 1.60049 1.12928 1.21655 0.90858 1.01335 0.87524 1.21778 0.95592 1.00715 0.98255 1.22430 0.84993 0.96247 0.94609 0.93054 1.87731 1.31016 1.57083 1.55110 1.23345 0.95813 0.95133 0.89597 1.21455 0.83879 0.99766 0.93187 1.44001 1.09994 1.45907 1.31304 1.19137 1.19231 1.10143 0.90146 0.91129 1.25132 0.99752 0.98103 0.96179 1.69985 1.40324 1.33932 1.10458 0.86242 0.78284 0.82308 0.79754 1.21229 1.21500 1.20313 1.21285 0.90912 0.95926 0.88901 0.94679 1.21748 0.95805 0.96573 0.85693 0.91513 0.92420 0.92219 0.89140 0.91530 0.91896 0.91872 0.89314 0.91312 0.90267 0.90868 0.90089 0.94162 0.95448 0.88528 0.93482 0.91130 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.67 37.16 0.32 -1.11 16 2 C -0.12 -1.29 2.39 -91.78 -0.22 -1.51 16 3 C -0.14 -1.41 8.99 37.16 0.33 -1.07 16 4 C 0.52 8.31 6.84 -10.99 -0.08 8.24 16 5 O -0.54 -11.04 15.46 5.56 0.09 -10.95 16 6 N -0.61 -9.71 2.99 -172.97 -0.52 -10.23 16 7 C 0.11 1.30 5.92 -3.90 -0.02 1.27 16 8 C -0.12 -1.68 5.81 -26.88 -0.16 -1.84 16 9 C 0.08 1.39 2.48 -26.63 -0.07 1.32 16 10 H 0.05 0.95 8.13 -51.93 -0.42 0.52 16 11 O -0.39 -7.67 10.49 -35.23 -0.37 -8.04 16 12 C 0.04 0.77 6.95 37.26 0.26 1.03 16 13 C 0.14 3.42 5.40 -3.47 -0.02 3.40 16 14 N -0.59 -14.68 3.04 -164.36 -0.50 -15.18 16 15 C -0.26 -6.93 8.85 -15.06 -0.13 -7.07 16 16 H 0.07 1.86 6.30 -52.48 -0.33 1.53 16 17 C 0.01 0.20 5.07 -17.43 -0.09 0.12 16 18 N -0.90 -26.00 11.04 55.49 0.61 -25.39 16 19 Si 0.90 21.73 29.57 -169.99 -5.03 16.70 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.14 2.95 3.03 -67.52 -0.20 2.74 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 C 0.12 2.46 4.49 -3.70 -0.02 2.44 16 26 H 0.07 0.82 7.89 -51.92 -0.41 0.41 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.79 6.54 -51.93 -0.34 0.45 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.60 7.27 -51.93 -0.38 0.22 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.78 4.88 -51.93 -0.25 0.53 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 2.51 6.22 -51.93 -0.32 2.19 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 43 H 0.10 2.34 6.85 -51.93 -0.36 1.98 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -31.84 328.10 -7.83 -39.67 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.98 Total: 0.50 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.09 Total: 7.96 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.40 Total: -50.80 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.28 Total: -18.99 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.84 -7.83 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074174735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.247 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds