Wall clock time and date at job start Tue Mar 31 2020 02:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47156 * 2 1 4 4 C 1.50696 * 109.47105 * 240.00223 * 2 1 3 5 5 O 1.21279 * 120.00430 * 20.61201 * 4 2 1 6 6 N 1.34776 * 120.00023 * 200.61079 * 4 2 1 7 7 C 1.46841 * 120.41110 * 4.77696 * 6 4 2 8 8 C 1.52911 * 109.49684 * 232.19396 * 7 6 4 9 9 C 1.52794 * 108.89539 * 306.41151 * 8 7 6 10 10 H 1.08999 * 109.34112 * 302.70347 * 9 8 7 11 11 O 1.42602 * 111.11793 * 182.39354 * 9 8 7 12 12 C 1.43141 * 113.63736 * 176.38913 * 11 9 8 13 13 C 1.53198 * 109.74372 * 61.68132 * 12 11 9 14 14 N 1.47351 * 108.80090 * 308.79643 * 13 12 11 15 15 C 1.36932 * 121.30572 * 230.25766 * 14 13 12 16 16 H 1.08003 * 120.00517 * 150.97917 * 15 14 13 17 17 C 1.38814 * 120.00022 * 330.97915 * 15 14 13 18 18 N 1.31618 * 119.99689 * 348.45070 * 17 15 14 19 19 Si 1.86801 * 120.00231 * 168.44576 * 17 15 14 20 20 H 1.48500 * 109.46924 * 94.96102 * 19 17 15 21 21 H 1.48497 * 109.47483 * 214.96093 * 19 17 15 22 22 H 1.48504 * 109.47066 * 334.96445 * 19 17 15 23 23 C 1.46878 * 117.39176 * 50.23606 * 14 13 12 24 24 H 1.08996 * 110.20504 * 67.97285 * 23 14 13 25 25 C 1.47138 * 120.41326 * 185.05245 * 6 4 2 26 26 H 1.09009 * 109.47382 * 59.99971 * 1 2 3 27 27 H 1.09002 * 109.47462 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47279 * 300.00004 * 1 2 3 29 29 H 1.08995 * 109.47169 * 120.00069 * 2 1 3 30 30 H 1.09000 * 109.46954 * 55.73151 * 3 2 1 31 31 H 1.08996 * 109.47252 * 175.73126 * 3 2 1 32 32 H 1.09002 * 109.47402 * 295.73822 * 3 2 1 33 33 H 1.08997 * 109.50823 * 352.17521 * 7 6 4 34 34 H 1.08999 * 109.51264 * 112.32234 * 7 6 4 35 35 H 1.08996 * 109.65772 * 186.52349 * 8 7 6 36 36 H 1.09004 * 109.54110 * 66.23006 * 8 7 6 37 37 H 1.08997 * 109.42847 * 181.76887 * 12 11 9 38 38 H 1.09003 * 109.42449 * 301.66209 * 12 11 9 39 39 H 1.08996 * 109.58073 * 68.58694 * 13 12 11 40 40 H 1.08996 * 109.58227 * 188.99828 * 13 12 11 41 41 H 0.97007 * 119.99925 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.72136 * 246.43234 * 25 6 4 43 43 H 1.08996 * 109.72563 * 7.10345 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.3076 -0.8398 -2.1943 6 7 3.2869 -1.2018 -1.2599 7 6 4.1364 -1.1432 -0.0636 8 6 5.4765 -0.4989 -0.4202 9 6 6.0849 -1.2464 -1.6058 10 1 6.1931 -2.3006 -1.3509 11 8 7.3654 -0.7178 -1.9441 12 6 8.0212 -1.4320 -2.9970 13 6 7.1832 -1.3519 -4.2770 14 7 5.8004 -1.7542 -3.9652 15 6 5.1457 -2.6927 -4.7173 16 1 4.3837 -3.3108 -4.2660 17 6 5.4615 -2.8498 -6.0599 18 7 6.2161 -1.9586 -6.6670 19 14 4.8156 -4.3260 -7.0049 20 1 3.5615 -3.9538 -7.7077 21 1 5.8299 -4.7600 -7.9988 22 1 4.5417 -5.4379 -6.0593 23 6 5.1519 -1.1095 -2.8158 24 1 4.9761 -0.0545 -3.0258 25 6 3.8245 -1.7981 -2.4929 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.6155 1.9779 0.8493 31 1 3.1272 1.4434 0.0765 32 1 1.7403 1.9338 -0.9257 33 1 3.6419 -0.5495 0.7052 34 1 4.3093 -2.1525 0.3099 35 1 6.1508 -0.5585 0.4340 36 1 5.3187 0.5456 -0.6891 37 1 9.0019 -0.9919 -3.1776 38 1 8.1402 -2.4761 -2.7075 39 1 7.1898 -0.3294 -4.6545 40 1 7.5986 -2.0236 -5.0282 41 1 6.4371 -2.0685 -7.6052 42 1 3.9902 -2.8650 -2.3435 43 1 3.1220 -1.6454 -3.3121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074174735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:09 Heat of formation + Delta-G solvation = -78.929636 kcal Electronic energy + Delta-G solvation = -24098.018569 eV Core-core repulsion = 20756.928713 eV Total energy + Delta-G solvation = -3341.089855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62643 -40.18206 -37.48139 -36.58336 -35.48346 -33.39957 -32.94865 -31.42130 -29.01817 -28.01340 -27.00419 -25.49113 -24.46403 -23.30160 -22.43486 -21.39536 -19.62839 -18.71336 -18.55747 -17.21846 -17.09489 -16.69592 -16.51955 -16.26333 -15.77679 -15.52677 -15.17854 -14.84612 -14.71902 -14.60709 -14.09047 -13.88809 -13.53118 -13.36342 -13.15848 -12.97941 -12.90596 -12.83752 -12.65125 -12.40288 -12.35215 -12.07970 -12.03833 -11.96292 -11.88042 -11.70784 -11.26289 -10.76865 -10.68338 -10.55731 -9.69761 -8.74492 -7.94373 -5.45850 1.41073 1.42926 1.51933 1.59659 1.93419 2.43609 2.82072 3.21539 3.42918 3.48789 3.82469 3.91977 3.96921 4.07578 4.11164 4.17278 4.23920 4.36387 4.41730 4.50145 4.54647 4.60549 4.68549 4.77411 4.81137 4.85724 4.90717 4.94209 4.98928 5.03888 5.11501 5.13597 5.27459 5.34456 5.37046 5.45929 5.53876 5.58778 6.23960 6.32745 6.43336 7.02419 7.17216 7.69003 8.24645 9.11447 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017319 B = 0.006219 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.319396 B = 4501.045562 C = 5715.193282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.504 3.496 5 O -0.595 6.595 6 N -0.611 5.611 7 C 0.106 3.894 8 C -0.116 4.116 9 C 0.080 3.920 10 H 0.055 0.945 11 O -0.392 6.392 12 C 0.052 3.948 13 C 0.146 3.854 14 N -0.606 5.606 15 C -0.262 4.262 16 H 0.072 0.928 17 C -0.047 4.047 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.292 1.292 21 H -0.286 1.286 22 H -0.266 1.266 23 C 0.135 3.865 24 H 0.004 0.996 25 C 0.138 3.862 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.096 0.904 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.049 0.951 39 H -0.005 1.005 40 H 0.071 0.929 41 H 0.252 0.748 42 H 0.068 0.932 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 3.242 20.093 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.198 4.198 4 C 0.295 3.705 5 O -0.475 6.475 6 N -0.344 5.344 7 C -0.015 4.015 8 C -0.155 4.155 9 C 0.021 3.979 10 H 0.073 0.927 11 O -0.311 6.311 12 C -0.026 4.026 13 C 0.021 3.979 14 N -0.331 5.331 15 C -0.391 4.391 16 H 0.089 0.911 17 C -0.242 4.242 18 N -0.581 5.581 19 Si 0.794 3.206 20 H -0.219 1.219 21 H -0.212 1.212 22 H -0.190 1.190 23 C 0.028 3.972 24 H 0.021 0.979 25 C 0.015 3.985 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.149 0.851 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.151 0.849 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.127 0.873 38 H 0.068 0.932 39 H 0.013 0.987 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.232 3.308 19.521 20.062 hybrid contribution -0.238 -0.821 -2.047 2.218 sum -3.470 2.487 17.475 17.989 Atomic orbital electron populations 1.21658 0.92545 1.02146 1.02703 1.21431 0.98213 0.97928 0.95063 1.21807 1.02133 0.92830 1.03063 1.21773 0.80709 0.77516 0.90519 1.90673 1.57055 1.59912 1.39906 1.48408 1.13919 1.59376 1.12690 1.22058 0.89614 1.03470 0.86354 1.21825 0.96709 0.99761 0.97172 1.22535 0.83498 0.97495 0.94379 0.92703 1.87742 1.31539 1.57366 1.54437 1.23177 0.95947 0.96165 0.87262 1.21318 0.84414 0.97055 0.95129 1.44296 1.10730 1.45921 1.32151 1.19426 1.18795 1.10325 0.90574 0.91057 1.25885 1.00526 1.00700 0.97118 1.70144 1.41906 1.35686 1.10412 0.85271 0.77205 0.79615 0.78471 1.21888 1.21218 1.19006 1.21430 0.92660 0.93785 0.89368 0.97883 1.21226 0.93998 0.96535 0.86758 0.94140 0.93259 0.88569 0.85119 0.88059 0.91151 0.94510 0.84935 0.89149 0.86543 0.91293 0.87271 0.93232 0.98662 0.91039 0.93919 0.91381 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.67 71.98 0.62 -1.93 16 2 C -0.11 -2.02 2.39 -11.54 -0.03 -2.04 16 3 C -0.14 -2.30 8.99 71.98 0.65 -1.65 16 4 C 0.50 15.97 6.84 87.66 0.60 16.57 16 5 O -0.60 -25.53 15.46 -3.03 -0.05 -25.57 16 6 N -0.61 -18.69 2.99 -819.54 -2.45 -21.14 16 7 C 0.11 2.05 5.92 86.28 0.51 2.56 16 8 C -0.12 -2.67 5.81 30.50 0.18 -2.50 16 9 C 0.08 2.76 2.48 30.66 0.08 2.84 16 10 H 0.05 1.88 8.13 -2.39 -0.02 1.86 16 11 O -0.39 -14.68 10.49 -148.98 -1.56 -16.24 16 12 C 0.05 2.01 6.95 72.05 0.50 2.51 16 13 C 0.15 7.28 5.40 86.28 0.47 7.75 16 14 N -0.61 -31.45 3.04 -673.90 -2.05 -33.50 16 15 C -0.26 -14.63 8.85 84.03 0.74 -13.88 16 16 H 0.07 3.90 6.30 -2.91 -0.02 3.88 16 17 C -0.05 -2.66 5.07 84.86 0.43 -2.23 16 18 N -0.94 -56.33 11.04 21.65 0.24 -56.09 16 19 Si 0.97 46.02 29.57 68.60 2.03 48.05 16 20 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C 0.13 5.91 3.03 45.05 0.14 6.05 16 24 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 25 C 0.14 5.67 4.49 86.25 0.39 6.06 16 26 H 0.04 0.98 7.89 -2.38 -0.02 0.96 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.13 1.50 6.54 -2.39 -0.02 1.48 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.05 7.27 -2.39 -0.02 1.04 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.13 1.47 4.88 -2.39 -0.01 1.46 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.11 3.57 8.14 -2.39 -0.02 3.56 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 39 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.07 3.89 6.22 -2.39 -0.01 3.88 16 41 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 42 H 0.07 2.78 7.36 -2.39 -0.02 2.76 16 43 H 0.05 2.73 6.85 -2.39 -0.02 2.72 16 Total: -1.00 -76.07 328.10 2.42 -73.66 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.99 Total: 10.74 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 5.27 Total: 20.09 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -4.26 Total: -110.73 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.61 Total: -41.81 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -76.07 2.42 -73.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074174735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.275 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds