Wall clock time and date at job start Tue Mar 31 2020 02:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47232 * 2 1 4 4 H 1.08998 * 109.47444 * 54.86030 * 3 2 1 5 5 O 1.42901 * 109.47089 * 294.86170 * 3 2 1 6 6 C 1.42895 * 114.00059 * 103.28415 * 5 3 2 7 7 C 1.50700 * 109.47090 * 174.86236 * 3 2 1 8 8 O 1.21288 * 119.99684 * 105.23015 * 7 3 2 9 9 N 1.34767 * 120.00589 * 285.23485 * 7 3 2 10 10 C 1.47347 * 125.51908 * 4.29757 * 9 7 3 11 11 C 1.55160 * 104.79897 * 156.68873 * 10 9 7 12 12 C 1.54786 * 101.35610 * 37.54305 * 11 10 9 13 13 H 1.09000 * 113.40741 * 85.63797 * 12 11 10 14 14 C 1.53518 * 109.69079 * 212.75955 * 12 11 10 15 15 N 1.46650 * 107.04943 * 84.08770 * 14 12 11 16 16 C 1.36940 * 125.28538 * 197.40493 * 15 14 12 17 17 H 1.07994 * 119.99917 * 359.94517 * 16 15 14 18 18 C 1.38808 * 119.99769 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00457 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99761 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46963 * 90.00062 * 20 18 16 22 22 H 1.48499 * 109.47136 * 210.00005 * 20 18 16 23 23 H 1.48495 * 109.47529 * 329.99956 * 20 18 16 24 24 C 1.46488 * 109.42584 * 17.37812 * 15 14 12 25 25 C 1.47253 * 125.53240 * 184.60961 * 9 7 3 26 26 H 1.09000 * 111.94346 * 55.56481 * 25 9 7 27 27 H 1.08998 * 109.47183 * 299.21649 * 1 2 3 28 28 H 1.09000 * 109.47200 * 59.21334 * 1 2 3 29 29 H 1.09004 * 109.47290 * 179.22032 * 1 2 3 30 30 H 1.09003 * 109.47327 * 120.00240 * 2 1 3 31 31 H 1.08999 * 109.46584 * 239.99849 * 2 1 3 32 32 H 1.09001 * 109.47166 * 65.27526 * 6 5 3 33 33 H 1.09003 * 109.47418 * 185.28262 * 6 5 3 34 34 H 1.09004 * 109.46789 * 305.28103 * 6 5 3 35 35 H 1.09002 * 110.35594 * 275.63909 * 10 9 7 36 36 H 1.09001 * 110.35731 * 37.92754 * 10 9 7 37 37 H 1.09002 * 111.21965 * 279.47440 * 11 10 9 38 38 H 1.08997 * 110.93925 * 155.48911 * 11 10 9 39 39 H 1.08997 * 109.91839 * 324.73557 * 14 12 11 40 40 H 1.08998 * 109.91945 * 203.43653 * 14 12 11 41 41 H 0.96994 * 120.00370 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.71886 * 238.31880 * 24 15 14 43 43 H 1.09000 * 109.67503 * 117.74986 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6035 1.9822 0.8403 5 8 1.6647 2.0804 -1.2224 6 6 0.5592 2.9767 -1.0948 7 6 3.5416 1.4443 0.1272 8 8 4.2318 1.6906 -0.8393 9 7 4.1177 1.1722 1.3148 10 6 3.4047 0.7709 2.5402 11 6 4.4649 0.0187 3.3873 12 6 5.7360 0.8521 3.0947 13 1 5.8453 1.7187 3.7468 14 6 6.9689 -0.0625 3.1089 15 7 7.0702 -0.6682 1.7772 16 6 7.8077 -1.7798 1.4678 17 1 8.3765 -2.2816 2.2366 18 6 7.8247 -2.2612 0.1660 19 7 7.1324 -1.6490 -0.7712 20 14 8.8313 -3.7771 -0.2562 21 1 7.9942 -4.9914 -0.0820 22 1 9.2898 -3.6901 -1.6659 23 1 10.0099 -3.8552 0.6437 24 6 6.2595 0.1002 0.8294 25 6 5.5610 1.2340 1.6000 26 1 5.9822 2.2103 1.3600 27 1 -0.3633 0.5016 0.8969 28 1 -0.3633 0.5260 -0.8828 29 1 -0.3634 -1.0276 -0.0140 30 1 1.8934 -0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 0.8426 3.8148 -0.4581 33 1 0.2767 3.3479 -2.0799 34 1 -0.2851 2.4510 -0.6487 35 1 3.0436 1.6500 3.0740 36 1 2.5750 0.1074 2.2961 37 1 4.5847 -1.0098 3.0469 38 1 4.2114 0.0512 4.4469 39 1 6.8454 -0.8405 3.8623 40 1 7.8635 0.5234 3.3194 41 1 7.1440 -1.9856 -1.6808 42 1 5.5122 -0.5493 0.3736 43 1 6.9009 0.5221 0.0556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075606671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:56 Heat of formation + Delta-G solvation = -41.589357 kcal Electronic energy + Delta-G solvation = -23931.319500 eV Core-core repulsion = 20591.848841 eV Total energy + Delta-G solvation = -3339.470659 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25132 -38.61745 -36.96717 -34.92097 -33.36554 -32.08582 -30.60079 -29.04560 -28.05851 -26.73408 -25.52919 -24.36967 -22.78521 -21.75299 -20.56927 -19.61273 -18.67149 -17.30508 -16.83297 -16.47617 -15.74359 -15.25242 -15.20401 -14.56533 -14.27953 -13.98420 -13.73785 -13.46749 -13.23059 -13.01258 -12.66018 -12.43938 -12.22755 -11.98742 -11.71644 -11.62838 -11.42868 -11.34059 -11.14593 -10.96564 -10.78351 -10.73748 -10.45908 -10.15310 -9.99230 -9.90688 -9.82223 -9.65425 -9.01754 -8.52495 -8.12330 -6.75204 -5.60896 -2.98295 3.02831 3.07973 3.44270 3.48793 3.52126 3.98361 4.55164 4.58788 4.80715 4.84146 4.87739 5.00403 5.16557 5.18821 5.25496 5.29131 5.44472 5.49013 5.52663 5.56557 5.59323 5.65146 5.72081 5.83428 5.91857 5.95814 6.03624 6.08152 6.21654 6.26044 6.40972 6.61457 6.63281 6.66099 6.88489 7.08313 7.65278 7.70148 7.98277 8.02023 8.36645 8.66667 9.29689 9.90624 10.53524 11.48026 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.005496 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.839314 B = 5093.662834 C = 5743.546706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.141 4.141 3 C 0.082 3.918 4 H 0.079 0.921 5 O -0.356 6.356 6 C 0.025 3.975 7 C 0.519 3.481 8 O -0.506 6.506 9 N -0.608 5.608 10 C 0.095 3.905 11 C -0.119 4.119 12 C -0.110 4.110 13 H 0.088 0.912 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.236 4.236 17 H 0.078 0.922 18 C -0.005 4.005 19 N -0.912 5.912 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.179 3.821 25 C 0.115 3.885 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.016 0.984 41 H 0.253 0.747 42 H 0.057 0.943 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.027 7.226 7.979 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.020 3.980 4 H 0.097 0.903 5 O -0.273 6.273 6 C -0.071 4.071 7 C 0.305 3.695 8 O -0.379 6.379 9 N -0.344 5.344 10 C -0.028 4.028 11 C -0.157 4.157 12 C -0.130 4.130 13 H 0.106 0.894 14 C 0.018 3.982 15 N -0.329 5.329 16 C -0.364 4.364 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.559 5.559 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.054 3.946 25 C 0.012 3.988 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.550 7.233 6.954 17.674 hybrid contribution 0.318 -0.680 -0.023 0.751 sum -14.232 6.553 6.930 17.133 Atomic orbital electron populations 1.21818 0.95065 1.02254 1.01649 1.21989 0.96539 0.94958 1.04387 1.21960 0.92483 0.95171 0.88386 0.90268 1.88068 1.50097 1.59686 1.29481 1.22966 0.88863 0.92522 1.02797 1.20096 0.89484 0.77896 0.81998 1.90764 1.64203 1.46849 1.36078 1.48542 1.08128 1.68368 1.09408 1.22482 0.96055 0.98270 0.85997 1.22773 0.93630 1.00386 0.98928 1.22947 0.96542 0.98249 0.95262 0.89410 1.21064 0.93335 0.93905 0.89870 1.44146 1.55343 1.30713 1.02742 1.18988 1.21686 1.01802 0.93924 0.90420 1.24853 1.00143 0.99267 0.95963 1.70011 1.43943 1.40532 1.01369 0.86159 0.79607 0.82668 0.77529 1.21674 1.21684 1.20705 1.21270 0.93904 0.89274 0.90173 1.22886 0.80065 1.00696 0.95202 0.90306 0.92918 0.92130 0.92086 0.90002 0.89958 0.94181 0.89406 0.93631 0.91971 0.90833 0.89427 0.90548 0.94375 0.96625 0.93641 0.92486 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.05 37.16 0.34 -1.13 16 2 C -0.14 -1.86 5.47 -26.73 -0.15 -2.01 16 3 C 0.08 1.19 2.03 -27.89 -0.06 1.13 16 4 H 0.08 0.91 7.47 -51.93 -0.39 0.52 16 5 O -0.36 -5.56 9.64 -54.70 -0.53 -6.09 16 6 C 0.03 0.26 10.32 101.05 1.04 1.30 16 7 C 0.52 10.07 6.88 -10.99 -0.08 9.99 16 8 O -0.51 -12.47 16.56 -13.91 -0.23 -12.70 16 9 N -0.61 -10.80 2.83 -161.68 -0.46 -11.26 16 10 C 0.10 1.24 6.43 -2.44 -0.02 1.22 16 11 C -0.12 -1.68 6.34 -24.65 -0.16 -1.84 16 12 C -0.11 -1.82 3.97 -88.21 -0.35 -2.17 16 13 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 14 C 0.14 2.93 6.50 -3.69 -0.02 2.90 16 15 N -0.60 -15.62 3.37 -172.29 -0.58 -16.20 16 16 C -0.24 -6.68 10.25 -15.06 -0.15 -6.84 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 19 N -0.91 -28.30 10.23 55.49 0.57 -27.74 16 20 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.18 4.65 4.53 -3.60 -0.02 4.63 16 25 C 0.11 2.30 3.83 -65.87 -0.25 2.05 16 26 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.59 6.39 -51.93 -0.33 0.26 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.04 5.62 -51.93 -0.29 0.75 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.37 6.18 -51.93 -0.32 0.05 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.85 5.35 -51.93 -0.28 0.57 16 37 H 0.09 1.50 7.93 -51.93 -0.41 1.09 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.74 7.95 -51.93 -0.41 0.32 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.06 1.67 6.88 -51.93 -0.36 1.32 16 43 H 0.04 1.32 7.51 -51.93 -0.39 0.93 16 LS Contribution 333.45 15.07 5.02 5.02 Total: -1.00 -35.58 333.45 -8.15 -43.73 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.96 Total: -1.45 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 0.04 Total: 9.01 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.47 Total: -55.19 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.76 Total: -18.79 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.58 -8.15 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075606671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.139 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds