Wall clock time and date at job start Tue Mar 31 2020 02:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47232 * 2 1 4 4 H 1.08998 * 109.47444 * 54.86030 * 3 2 1 5 5 O 1.42901 * 109.47089 * 294.86170 * 3 2 1 6 6 C 1.42895 * 114.00059 * 103.28415 * 5 3 2 7 7 C 1.50700 * 109.47090 * 174.86236 * 3 2 1 8 8 O 1.21288 * 119.99684 * 105.23015 * 7 3 2 9 9 N 1.34767 * 120.00589 * 285.23485 * 7 3 2 10 10 C 1.47347 * 125.51908 * 4.29757 * 9 7 3 11 11 C 1.55160 * 104.79897 * 156.68873 * 10 9 7 12 12 C 1.54786 * 101.35610 * 37.54305 * 11 10 9 13 13 H 1.09000 * 113.40741 * 85.63797 * 12 11 10 14 14 C 1.53518 * 109.69079 * 212.75955 * 12 11 10 15 15 N 1.46650 * 107.04943 * 84.08770 * 14 12 11 16 16 C 1.36940 * 125.28538 * 197.40493 * 15 14 12 17 17 H 1.07994 * 119.99917 * 359.94517 * 16 15 14 18 18 C 1.38808 * 119.99769 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00457 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99761 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46963 * 90.00062 * 20 18 16 22 22 H 1.48499 * 109.47136 * 210.00005 * 20 18 16 23 23 H 1.48495 * 109.47529 * 329.99956 * 20 18 16 24 24 C 1.46488 * 109.42584 * 17.37812 * 15 14 12 25 25 C 1.47253 * 125.53240 * 184.60961 * 9 7 3 26 26 H 1.09000 * 111.94346 * 55.56481 * 25 9 7 27 27 H 1.08998 * 109.47183 * 299.21649 * 1 2 3 28 28 H 1.09000 * 109.47200 * 59.21334 * 1 2 3 29 29 H 1.09004 * 109.47290 * 179.22032 * 1 2 3 30 30 H 1.09003 * 109.47327 * 120.00240 * 2 1 3 31 31 H 1.08999 * 109.46584 * 239.99849 * 2 1 3 32 32 H 1.09001 * 109.47166 * 65.27526 * 6 5 3 33 33 H 1.09003 * 109.47418 * 185.28262 * 6 5 3 34 34 H 1.09004 * 109.46789 * 305.28103 * 6 5 3 35 35 H 1.09002 * 110.35594 * 275.63909 * 10 9 7 36 36 H 1.09001 * 110.35731 * 37.92754 * 10 9 7 37 37 H 1.09002 * 111.21965 * 279.47440 * 11 10 9 38 38 H 1.08997 * 110.93925 * 155.48911 * 11 10 9 39 39 H 1.08997 * 109.91839 * 324.73557 * 14 12 11 40 40 H 1.08998 * 109.91945 * 203.43653 * 14 12 11 41 41 H 0.96994 * 120.00370 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.71886 * 238.31880 * 24 15 14 43 43 H 1.09000 * 109.67503 * 117.74986 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6035 1.9822 0.8403 5 8 1.6647 2.0804 -1.2224 6 6 0.5592 2.9767 -1.0948 7 6 3.5416 1.4443 0.1272 8 8 4.2318 1.6906 -0.8393 9 7 4.1177 1.1722 1.3148 10 6 3.4047 0.7709 2.5402 11 6 4.4649 0.0187 3.3873 12 6 5.7360 0.8521 3.0947 13 1 5.8453 1.7187 3.7468 14 6 6.9689 -0.0625 3.1089 15 7 7.0702 -0.6682 1.7772 16 6 7.8077 -1.7798 1.4678 17 1 8.3765 -2.2816 2.2366 18 6 7.8247 -2.2612 0.1660 19 7 7.1324 -1.6490 -0.7712 20 14 8.8313 -3.7771 -0.2562 21 1 7.9942 -4.9914 -0.0820 22 1 9.2898 -3.6901 -1.6659 23 1 10.0099 -3.8552 0.6437 24 6 6.2595 0.1002 0.8294 25 6 5.5610 1.2340 1.6000 26 1 5.9822 2.2103 1.3600 27 1 -0.3633 0.5016 0.8969 28 1 -0.3633 0.5260 -0.8828 29 1 -0.3634 -1.0276 -0.0140 30 1 1.8934 -0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 0.8426 3.8148 -0.4581 33 1 0.2767 3.3479 -2.0799 34 1 -0.2851 2.4510 -0.6487 35 1 3.0436 1.6500 3.0740 36 1 2.5750 0.1074 2.2961 37 1 4.5847 -1.0098 3.0469 38 1 4.2114 0.0512 4.4469 39 1 6.8454 -0.8405 3.8623 40 1 7.8635 0.5234 3.3194 41 1 7.1440 -1.9856 -1.6808 42 1 5.5122 -0.5493 0.3736 43 1 6.9009 0.5221 0.0556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075606671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:55 Heat of formation + Delta-G solvation = -67.030908 kcal Electronic energy + Delta-G solvation = -23932.422729 eV Core-core repulsion = 20591.848841 eV Total energy + Delta-G solvation = -3340.573888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68036 -39.95436 -38.37997 -36.65604 -34.58851 -33.80558 -32.20201 -30.64067 -29.30877 -28.19438 -26.78129 -26.16645 -24.03055 -22.80690 -22.39864 -21.04249 -20.17746 -18.95715 -18.43572 -17.78089 -17.09465 -16.66694 -16.58179 -16.24915 -15.66246 -15.39292 -15.10903 -15.04562 -14.40682 -14.26392 -14.21406 -13.63954 -13.50291 -13.34493 -13.26155 -13.05056 -12.84332 -12.71751 -12.62427 -12.58037 -12.27917 -12.16164 -11.89986 -11.85409 -11.68336 -11.49620 -11.39402 -11.05709 -10.73670 -10.35401 -9.62046 -8.91275 -7.84424 -5.24486 1.40600 1.44244 1.53332 1.58409 1.79545 2.47063 2.92789 3.31429 3.34905 3.65983 3.67340 3.76457 3.80074 3.87623 4.03200 4.21139 4.34144 4.37598 4.41037 4.50799 4.51221 4.56758 4.58713 4.69140 4.82702 4.84667 4.88348 4.95960 5.06153 5.12507 5.15117 5.20151 5.22778 5.36897 5.44487 5.52249 5.57816 5.80394 6.11865 6.17938 6.60811 7.05681 7.22020 7.77968 8.38914 9.23086 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.005496 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.839314 B = 5093.662834 C = 5743.546706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.093 3.907 4 H 0.125 0.875 5 O -0.396 6.396 6 C 0.017 3.983 7 C 0.503 3.497 8 O -0.580 6.580 9 N -0.607 5.607 10 C 0.090 3.910 11 C -0.113 4.113 12 C -0.090 4.090 13 H 0.137 0.863 14 C 0.135 3.865 15 N -0.623 5.623 16 C -0.242 4.242 17 H 0.092 0.908 18 C -0.073 4.073 19 N -0.953 5.953 20 Si 0.981 3.019 21 H -0.283 1.283 22 H -0.301 1.301 23 H -0.261 1.261 24 C 0.202 3.798 25 C 0.115 3.885 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.128 0.872 39 H 0.056 0.944 40 H 0.022 0.978 41 H 0.241 0.759 42 H 0.010 0.990 43 H -0.024 1.024 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.410 7.721 12.014 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.032 3.968 4 H 0.143 0.857 5 O -0.314 6.314 6 C -0.079 4.079 7 C 0.292 3.708 8 O -0.459 6.459 9 N -0.342 5.342 10 C -0.030 4.030 11 C -0.151 4.151 12 C -0.109 4.109 13 H 0.155 0.845 14 C 0.010 3.990 15 N -0.350 5.350 16 C -0.371 4.371 17 H 0.109 0.891 18 C -0.265 4.265 19 N -0.602 5.602 20 Si 0.809 3.191 21 H -0.209 1.209 22 H -0.228 1.228 23 H -0.186 1.186 24 C 0.075 3.925 25 C 0.010 3.990 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.146 0.854 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.050 0.950 42 H 0.028 0.972 43 H -0.005 1.005 Dipole moment (debyes) X Y Z Total from point charges -16.961 7.726 11.094 21.690 hybrid contribution 1.110 -0.810 -1.251 1.858 sum -15.851 6.916 9.844 19.899 Atomic orbital electron populations 1.21786 0.91672 1.03284 1.03180 1.21981 0.99336 0.93706 1.02618 1.21978 0.88592 0.96470 0.89742 0.85750 1.88038 1.52113 1.60792 1.30486 1.23246 0.88201 0.92387 1.04023 1.21293 0.91756 0.76354 0.81360 1.90721 1.66244 1.50271 1.38628 1.48667 1.07404 1.67305 1.10800 1.22908 0.95758 1.00564 0.83782 1.22791 0.92441 0.97794 1.02027 1.23022 0.95796 0.99316 0.92751 0.84518 1.21379 0.95569 0.94948 0.87142 1.44456 1.54898 1.30356 1.05261 1.19513 1.21131 1.02228 0.94184 0.89057 1.25807 1.01901 1.02756 0.96077 1.70340 1.46272 1.42456 1.01114 0.85042 0.78570 0.78827 0.76698 1.20926 1.22839 1.18559 1.20762 0.91840 0.90023 0.89828 1.22645 0.81408 0.97622 0.97298 0.91147 0.89700 0.92213 0.91362 0.89490 0.94176 0.93003 0.88673 0.90848 0.87030 0.88986 0.93217 0.85352 0.92625 0.96049 0.95014 0.97195 1.00534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.05 71.98 0.65 -1.68 16 2 C -0.14 -3.55 5.47 30.59 0.17 -3.38 16 3 C 0.09 2.62 2.03 29.85 0.06 2.68 16 4 H 0.13 2.30 7.47 -2.39 -0.02 2.29 16 5 O -0.40 -12.33 9.64 -130.37 -1.26 -13.58 16 6 C 0.02 0.31 10.32 113.37 1.17 1.48 16 7 C 0.50 20.16 6.88 87.66 0.60 20.77 16 8 O -0.58 -31.08 16.56 15.56 0.26 -30.82 16 9 N -0.61 -21.29 2.83 -783.82 -2.22 -23.51 16 10 C 0.09 1.98 6.43 86.96 0.56 2.53 16 11 C -0.11 -2.72 6.34 31.94 0.20 -2.51 16 12 C -0.09 -2.67 3.97 -9.23 -0.04 -2.71 16 13 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 14 C 0.13 5.24 6.50 86.52 0.56 5.81 16 15 N -0.62 -33.37 3.37 -698.99 -2.36 -35.72 16 16 C -0.24 -14.08 10.25 84.03 0.86 -13.21 16 17 H 0.09 4.94 7.83 -2.91 -0.02 4.92 16 18 C -0.07 -4.43 5.48 84.86 0.47 -3.97 16 19 N -0.95 -63.76 10.23 21.65 0.22 -63.54 16 20 Si 0.98 48.41 29.55 68.60 2.03 50.44 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.30 -15.27 7.11 99.48 0.71 -14.57 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 24 C 0.20 11.24 4.53 86.67 0.39 11.63 16 25 C 0.11 4.68 3.83 45.91 0.18 4.86 16 26 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 1.00 6.39 -2.39 -0.02 0.99 16 29 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.09 2.08 5.62 -2.39 -0.01 2.06 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 0.93 6.18 -2.38 -0.01 0.91 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.72 5.35 -2.39 -0.01 1.71 16 37 H 0.05 1.60 7.93 -2.39 -0.02 1.58 16 38 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 2.00 7.95 -2.39 -0.02 1.98 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.24 15.92 8.31 -92.71 -0.77 15.15 16 42 H 0.01 0.63 6.88 -2.39 -0.02 0.62 16 43 H -0.02 -1.59 7.51 -2.39 -0.02 -1.61 16 Total: -1.00 -90.41 333.45 3.50 -86.91 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.99 Total: 7.53 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 5.84 Total: 22.30 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -4.35 Total: -122.77 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.00 Total: -44.40 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -90.41 3.50 -86.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075606671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.878 kcal (2) G-P(sol) polarization free energy of solvation -90.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds