Wall clock time and date at job start Tue Mar 31 2020 02:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46801 * 2 1 4 4 O 1.42903 * 109.46765 * 240.00384 * 2 1 3 5 5 C 1.53002 * 109.47156 * 120.00339 * 2 1 3 6 6 C 1.50695 * 109.47004 * 60.00020 * 5 2 1 7 7 O 1.21274 * 120.00413 * 0.27039 * 6 5 2 8 8 N 1.34784 * 119.99635 * 179.97438 * 6 5 2 9 9 C 1.47395 * 125.59058 * 0.02578 * 8 6 5 10 10 C 1.54850 * 104.80971 * 204.60963 * 9 8 6 11 11 C 1.55122 * 101.77742 * 322.81189 * 10 9 8 12 12 H 1.09006 * 113.46033 * 159.24425 * 11 10 9 13 13 C 1.54041 * 108.25829 * 286.09195 * 11 10 9 14 14 N 1.46708 * 106.82578 * 135.80790 * 13 11 10 15 15 C 1.36938 * 125.31844 * 161.80119 * 14 13 11 16 16 H 1.08006 * 120.00419 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99993 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99730 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00255 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47085 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47178 * 120.00118 * 19 17 15 22 22 H 1.48501 * 109.46947 * 239.99916 * 19 17 15 23 23 C 1.46630 * 109.35895 * 341.81754 * 14 13 11 24 24 C 1.46729 * 125.58826 * 179.71622 * 8 6 5 25 25 H 1.09008 * 111.32776 * 56.12335 * 24 8 6 26 26 H 1.09005 * 109.46932 * 299.99796 * 1 2 3 27 27 H 1.08998 * 109.47453 * 59.99822 * 1 2 3 28 28 H 1.09005 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46747 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47262 * 300.00295 * 3 2 1 31 31 H 1.08997 * 109.47365 * 60.00658 * 3 2 1 32 32 H 0.96700 * 113.99624 * 179.97438 * 4 2 1 33 33 H 1.09005 * 109.47089 * 299.99768 * 5 2 1 34 34 H 1.09002 * 109.46787 * 180.02562 * 5 2 1 35 35 H 1.09002 * 110.36773 * 323.43873 * 9 8 6 36 36 H 1.08997 * 110.37306 * 85.77008 * 9 8 6 37 37 H 1.08999 * 110.97201 * 80.93942 * 10 9 8 38 38 H 1.08996 * 110.96720 * 204.65409 * 10 9 8 39 39 H 1.09001 * 109.99206 * 255.14860 * 13 11 10 40 40 H 1.09003 * 109.99106 * 16.46629 * 13 11 10 41 41 H 0.96998 * 120.00189 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.75778 * 120.92656 * 23 14 13 43 43 H 1.08996 * 109.75733 * 241.63670 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2492 6 6 1.5377 -2.1421 1.2491 7 8 0.8445 -2.5402 0.3371 8 7 1.8638 -2.9722 2.2597 9 6 2.6996 -2.6216 3.4220 10 6 3.2857 -3.9697 3.9091 11 6 2.0942 -4.9354 3.6766 12 1 2.3902 -5.9826 3.6139 13 6 1.0333 -4.6624 4.7597 14 7 -0.2686 -4.6430 4.0836 15 6 -1.4831 -4.7835 4.7004 16 1 -1.5326 -4.9224 5.7703 17 6 -2.6507 -4.7473 3.9505 18 7 -2.5904 -4.5775 2.6466 19 14 -4.3075 -4.9382 4.7918 20 1 -4.1037 -5.1141 6.2522 21 1 -5.1288 -3.7251 4.5487 22 1 -5.0071 -6.1277 4.2433 23 6 -0.0660 -4.4502 2.6442 24 6 1.4397 -4.3711 2.3863 25 1 1.7256 -4.9530 1.5100 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6765 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 2.9703 -0.7114 -1.2332 33 1 1.6767 -0.2075 2.1393 34 1 3.1301 -0.7209 1.2494 35 1 3.5007 -1.9455 3.1232 36 1 2.0909 -2.1678 4.2040 37 1 4.1468 -4.2608 3.3076 38 1 3.5489 -3.9215 4.9657 39 1 1.0526 -5.4545 5.5083 40 1 1.2223 -3.6983 5.2319 41 1 -3.4062 -4.5519 2.1226 42 1 -0.4921 -5.2905 2.0963 43 1 -0.5426 -3.5231 2.3260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075740825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:40 Heat of formation + Delta-G solvation = -51.787157 kcal Electronic energy + Delta-G solvation = -23972.990180 eV Core-core repulsion = 20633.077311 eV Total energy + Delta-G solvation = -3339.912869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26144 -38.69565 -36.78888 -34.73170 -32.59281 -32.09183 -30.83257 -29.28691 -27.79817 -27.17610 -26.11536 -24.65092 -22.55868 -20.98557 -20.22288 -19.53326 -18.47401 -17.06674 -16.59150 -16.46734 -15.58985 -15.19388 -14.77693 -14.46645 -14.22747 -13.87915 -13.73090 -13.24409 -12.89455 -12.80303 -12.36513 -12.20977 -12.02599 -11.98242 -11.83500 -11.60608 -11.55697 -11.24187 -11.07985 -10.93446 -10.72246 -10.63877 -10.38135 -10.19672 -10.09904 -9.96644 -9.82256 -9.65945 -9.04170 -8.54264 -8.04355 -6.76495 -5.63260 -2.99475 3.16143 3.42092 3.43323 3.47578 3.51011 4.34154 4.52768 4.66962 4.74840 4.80971 4.94736 5.02648 5.14901 5.29997 5.39126 5.52491 5.53482 5.54264 5.58769 5.67542 5.78124 5.80195 5.90087 5.91553 5.94526 6.04355 6.13833 6.22942 6.25254 6.39169 6.54402 6.61455 6.68134 6.80814 6.92539 7.61939 7.72167 7.83479 7.94831 8.10069 8.34288 8.76889 9.28173 9.89216 10.52870 11.46373 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016821 B = 0.005916 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.149663 B = 4732.146724 C = 5848.064377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.146 3.854 3 C -0.177 4.177 4 O -0.541 6.541 5 C -0.164 4.164 6 C 0.525 3.475 7 O -0.508 6.508 8 N -0.608 5.608 9 C 0.102 3.898 10 C -0.124 4.124 11 C -0.111 4.111 12 H 0.097 0.903 13 C 0.142 3.858 14 N -0.603 5.603 15 C -0.234 4.234 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.914 5.914 19 Si 0.910 3.090 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.177 3.823 24 C 0.117 3.883 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.364 0.636 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.033 0.967 40 H 0.017 0.983 41 H 0.252 0.748 42 H 0.051 0.949 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.180 8.629 -0.666 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.105 3.895 3 C -0.235 4.235 4 O -0.345 6.345 5 C -0.204 4.204 6 C 0.313 3.687 7 O -0.383 6.383 8 N -0.343 5.343 9 C -0.022 4.022 10 C -0.162 4.162 11 C -0.131 4.131 12 H 0.115 0.885 13 C 0.016 3.984 14 N -0.330 5.330 15 C -0.362 4.362 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.561 5.561 19 Si 0.741 3.259 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.051 3.949 24 C 0.013 3.987 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.209 0.791 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.886 8.412 -1.413 16.297 hybrid contribution -0.216 0.088 0.751 0.786 sum 13.671 8.501 -0.662 16.112 Atomic orbital electron populations 1.22002 0.91995 1.05897 1.01158 1.20904 0.95864 0.89207 0.83565 1.22516 1.00991 0.97002 1.02946 1.86747 1.25208 1.79489 1.43068 1.22442 1.01949 0.94672 1.01366 1.19915 0.80931 0.86607 0.81226 1.90714 1.36551 1.76218 1.34780 1.48468 1.51281 1.12571 1.22009 1.22267 0.93561 0.97424 0.88899 1.22741 0.97502 0.94545 1.01445 1.23146 0.94972 0.98869 0.96119 0.88513 1.21293 0.85955 0.97653 0.93486 1.44247 1.00296 1.85631 1.02785 1.19048 0.82083 1.43359 0.91717 0.90457 1.24843 0.97761 1.02006 0.95701 1.70013 1.26383 1.55615 1.04056 0.86079 0.84244 0.77319 0.78305 1.20558 1.21805 1.21734 1.21117 0.87184 1.01720 0.84843 1.22451 0.98501 0.80915 0.96828 0.90650 0.92063 0.92582 0.88412 0.92593 0.91582 0.91586 0.79075 0.88576 0.89484 0.91544 0.91304 0.91179 0.90089 0.94860 0.96530 0.93713 0.93125 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.52 37.16 0.32 -2.11 16 2 C 0.15 1.93 0.98 -90.62 -0.09 1.84 16 3 C -0.18 -1.71 8.81 37.16 0.33 -1.38 16 4 O -0.54 -7.86 11.87 -53.56 -0.64 -8.49 16 5 C -0.16 -2.12 3.95 -27.88 -0.11 -2.23 16 6 C 0.53 9.51 6.95 -10.98 -0.08 9.44 16 7 O -0.51 -11.41 12.85 -12.77 -0.16 -11.58 16 8 N -0.61 -10.64 2.99 -162.73 -0.49 -11.12 16 9 C 0.10 1.36 6.22 -2.58 -0.02 1.34 16 10 C -0.12 -1.53 6.35 -24.63 -0.16 -1.68 16 11 C -0.11 -1.85 4.35 -87.74 -0.38 -2.23 16 12 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 13 C 0.14 2.87 6.45 -3.39 -0.02 2.85 16 14 N -0.60 -15.66 3.38 -172.35 -0.58 -16.24 16 15 C -0.23 -6.64 10.25 -15.06 -0.15 -6.80 16 16 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 17 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 18 N -0.91 -28.11 10.24 55.49 0.57 -27.54 16 19 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 C 0.18 4.55 4.91 -3.99 -0.02 4.53 16 24 C 0.12 2.32 3.55 -66.61 -0.24 2.09 16 25 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.10 1.98 5.52 -51.93 -0.29 1.69 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.36 3.66 9.05 45.56 0.41 4.08 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 0.86 7.84 -51.93 -0.41 0.45 16 35 H 0.07 0.68 7.45 -51.93 -0.39 0.29 16 36 H 0.07 0.99 7.18 -51.93 -0.37 0.61 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.33 6.52 -51.93 -0.34 0.00 16 41 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.05 1.48 7.33 -51.93 -0.38 1.10 16 43 H 0.05 1.60 6.66 -51.93 -0.35 1.25 16 LS Contribution 332.18 15.07 5.01 5.01 Total: -1.00 -35.19 332.18 -8.33 -43.52 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.30 Total: 3.44 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.71 Total: 5.38 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.50 Total: -54.91 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.80 Total: -20.07 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.19 -8.33 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075740825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.270 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds