Wall clock time and date at job start Tue Mar 31 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47299 * 2 1 4 4 C 1.52995 * 109.47299 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.56208 * 29.31075 * 4 3 2 6 6 C 1.53080 * 117.49672 * 243.60382 * 4 3 2 7 7 C 1.53003 * 59.98360 * 252.51403 * 6 4 3 8 8 H 1.09000 * 117.50056 * 107.49697 * 7 6 4 9 9 C 1.50697 * 117.49730 * 252.49849 * 7 6 4 10 10 O 1.21284 * 120.00355 * 68.74019 * 9 7 6 11 11 N 1.34783 * 119.99783 * 248.74855 * 9 7 6 12 12 C 1.46494 * 119.99755 * 179.97438 * 11 9 7 13 13 H 1.08998 * 110.64482 * 31.85864 * 12 11 9 14 14 C 1.54332 * 111.00418 * 268.77552 * 12 11 9 15 15 N 1.47023 * 107.26961 * 219.60479 * 14 12 11 16 16 C 1.36931 * 125.64764 * 178.85050 * 15 14 12 17 17 H 1.08002 * 120.00438 * 359.71989 * 16 15 14 18 18 C 1.38817 * 119.99680 * 179.43947 * 16 15 14 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00121 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00072 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99871 * 20 18 16 24 24 C 1.47429 * 108.70139 * 358.58464 * 15 14 12 25 25 C 1.54909 * 104.83064 * 24.35611 * 24 15 14 26 26 H 1.09000 * 111.00555 * 81.06615 * 25 24 15 27 27 O 1.42902 * 111.00232 * 204.91511 * 25 24 15 28 28 H 1.09001 * 109.47539 * 299.99836 * 1 2 3 29 29 H 1.08997 * 109.47171 * 59.99987 * 1 2 3 30 30 H 1.09003 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47539 * 240.00164 * 2 1 3 32 32 H 1.09007 * 109.47109 * 120.00062 * 2 1 3 33 33 H 1.09000 * 109.47092 * 60.00002 * 3 2 1 34 34 H 1.08997 * 109.47020 * 300.00105 * 3 2 1 35 35 H 1.08993 * 117.51859 * 145.03446 * 6 4 3 36 36 H 1.09007 * 117.48852 * 359.97438 * 6 4 3 37 37 H 0.96995 * 119.99648 * 359.97438 * 11 9 7 38 38 H 1.08999 * 109.99014 * 100.12971 * 14 12 11 39 39 H 1.08998 * 109.78107 * 338.96239 * 14 12 11 40 40 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.36548 * 143.19539 * 24 15 14 42 42 H 1.08999 * 110.36380 * 265.52047 * 24 15 14 43 43 H 0.96700 * 114.00220 * 298.54385 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 4.0405 0.5850 -0.4804 6 6 4.2762 2.0464 1.2172 7 6 4.2765 2.7945 -0.1175 8 1 3.6513 3.6839 -0.1961 9 6 5.5696 2.8386 -0.8901 10 8 6.0116 1.8264 -1.3911 11 7 6.2350 4.0030 -1.0242 12 6 7.4924 4.0458 -1.7748 13 1 7.4842 3.3117 -2.5804 14 6 8.7008 3.8134 -0.8434 15 7 9.7689 4.7253 -1.2784 16 6 11.0019 4.8460 -0.6953 17 1 11.2545 4.2421 0.1638 18 6 11.9294 5.7404 -1.2118 19 7 11.6217 6.4762 -2.2588 20 14 13.6143 5.8995 -0.4210 21 1 14.5530 4.9418 -1.0589 22 1 14.1187 7.2840 -0.6050 23 1 13.5105 5.5992 1.0297 24 6 9.2948 5.4836 -2.4505 25 6 7.7502 5.4704 -2.3330 26 1 7.4050 6.2323 -1.6341 27 8 7.1377 5.6375 -3.6133 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.2112 1.5862 1.5364 36 1 3.6504 2.4438 2.0163 37 1 5.8814 4.8126 -0.6237 38 1 9.0398 2.7806 -0.9234 39 1 8.4208 4.0351 0.1864 40 1 12.2697 7.1015 -2.6195 41 1 9.6691 6.5067 -2.4171 42 1 9.6093 4.9935 -3.3719 43 1 7.3515 6.4758 -4.0452 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077639781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:18 Heat of formation + Delta-G solvation = -48.875335 kcal Electronic energy + Delta-G solvation = -22176.190377 eV Core-core repulsion = 18836.403774 eV Total energy + Delta-G solvation = -3339.786603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.98763 -38.24460 -36.96819 -35.06982 -34.05243 -33.98213 -31.70990 -28.61635 -27.74049 -27.00301 -24.81533 -23.52046 -22.16241 -20.84441 -20.67088 -20.07277 -19.76334 -17.42688 -17.02590 -16.65056 -15.72277 -15.44707 -14.94866 -14.91248 -14.42869 -14.20193 -13.82374 -13.48933 -13.38563 -13.01040 -12.83887 -12.51073 -12.27534 -12.21382 -11.88859 -11.53731 -11.48293 -11.29426 -11.23560 -11.06073 -11.02431 -10.85088 -10.35612 -10.20049 -10.14279 -9.95095 -9.72818 -9.69694 -9.27739 -8.74088 -8.73877 -6.94063 -5.74226 -3.16531 2.65902 3.27526 3.36870 3.41907 3.43585 3.76926 4.37667 4.44135 4.61002 4.63348 4.69409 4.85756 4.92643 5.05239 5.12535 5.28592 5.30134 5.40298 5.48342 5.55166 5.57763 5.61952 5.64141 5.66983 5.80134 5.84890 5.87136 5.99248 6.02485 6.10249 6.17970 6.22336 6.49971 6.65581 6.94369 7.29513 7.50485 7.67383 7.77194 8.09380 8.23624 8.46524 9.11945 9.72465 10.35031 11.30240 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033590 B = 0.003084 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.378491 B = 9076.548658 C = 9636.736786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.188 4.188 8 H 0.121 0.879 9 C 0.542 3.458 10 O -0.542 6.542 11 N -0.710 5.710 12 C 0.141 3.859 13 H 0.100 0.900 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.222 4.222 17 H 0.080 0.920 18 C -0.011 4.011 19 N -0.925 5.925 20 Si 0.918 3.082 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.129 3.871 25 C 0.067 3.933 26 H 0.062 0.938 27 O -0.566 6.566 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.399 0.601 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.253 0.747 41 H 0.113 0.887 42 H 0.025 0.975 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.520 -4.714 4.785 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.138 4.138 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.210 4.210 8 H 0.139 0.861 9 C 0.328 3.672 10 O -0.420 6.420 11 N -0.360 5.360 12 C 0.036 3.964 13 H 0.118 0.882 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.350 4.350 17 H 0.098 0.902 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.749 3.251 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.003 3.997 25 C 0.006 3.994 26 H 0.079 0.921 27 O -0.371 6.371 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.233 0.767 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.131 0.869 42 H 0.043 0.957 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -19.237 -5.914 4.535 20.630 hybrid contribution 1.039 1.137 0.395 1.590 sum -18.198 -4.777 4.930 19.449 Atomic orbital electron populations 1.21781 0.95950 1.01581 1.01728 1.21505 0.95554 0.96573 1.02402 1.21238 0.92031 0.97307 1.02120 1.22455 0.94514 0.95628 1.01182 0.86416 1.23112 1.03135 1.02147 0.90240 1.22301 0.97884 0.98711 1.02068 0.86090 1.19621 0.84454 0.83363 0.79792 1.90691 1.68827 1.33929 1.48517 1.45886 1.24162 1.10669 1.55260 1.22005 0.82673 0.97723 0.94035 0.88156 1.21627 0.87799 0.94657 0.95628 1.44296 1.12111 1.43235 1.33132 1.19110 0.88210 1.18297 1.09424 0.90191 1.24809 0.98773 0.99111 0.97977 1.69736 1.34383 1.28202 1.25015 0.86013 0.83542 0.77053 0.78538 1.21506 1.21589 1.20615 1.22572 0.86135 1.01285 0.89716 1.23642 0.96747 0.94791 0.84181 0.92053 1.86410 1.73753 1.43553 1.33411 0.92838 0.92751 0.92792 0.91746 0.91807 0.91702 0.91420 0.88200 0.87936 0.76742 0.94926 0.95163 0.93578 0.86942 0.95672 0.77541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.15 0.37 -0.63 16 2 C -0.12 -0.93 5.89 -26.73 -0.16 -1.09 16 3 C -0.09 -0.73 5.50 -26.73 -0.15 -0.88 16 4 C -0.12 -1.26 5.25 -90.58 -0.48 -1.73 16 5 H 0.12 1.47 7.60 -51.93 -0.39 1.08 16 6 C -0.15 -1.48 9.88 -26.69 -0.26 -1.74 16 7 C -0.19 -2.16 5.91 -91.77 -0.54 -2.70 16 8 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 9 C 0.54 8.64 7.61 -10.98 -0.08 8.56 16 10 O -0.54 -10.83 15.90 5.55 0.09 -10.74 16 11 N -0.71 -11.15 5.12 -52.03 -0.27 -11.42 16 12 C 0.14 2.73 3.04 -66.09 -0.20 2.53 16 13 H 0.10 2.18 7.55 -51.93 -0.39 1.79 16 14 C 0.13 2.87 7.01 -3.06 -0.02 2.85 16 15 N -0.60 -15.44 3.39 -170.07 -0.58 -16.02 16 16 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -26.39 10.09 55.49 0.56 -25.83 16 20 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.13 3.08 5.61 -2.53 -0.01 3.06 16 25 C 0.07 1.27 4.06 -24.58 -0.10 1.17 16 26 H 0.06 1.08 8.01 -51.93 -0.42 0.67 16 27 O -0.57 -9.90 13.47 -35.23 -0.47 -10.38 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 33 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 37 H 0.40 5.11 8.56 -40.82 -0.35 4.76 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 40 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.11 2.92 5.88 -51.93 -0.31 2.62 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.38 5.07 9.11 45.56 0.42 5.48 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -32.53 352.51 -8.73 -41.25 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.46 Total: 8.32 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.89 Total: 2.65 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.28 Total: -53.27 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.39 Total: -21.12 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.53 -8.73 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077639781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.622 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds